Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001248.1

Orthogroup ID

OG0006877

Physical Location & Seq

Genomic Coordinates Forward (+)

20932 .. 23068

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001248.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgaggttttggctagtttggccgagatcgactgggatcaagcccgaagtttcggtcgggtccgactgcctctaccttcgccgcctcgatgtgctgtcgtgggtgagattcgaagcaagctaccactataaggaagacggggaggctactctgagtcgttcttggctggccctgtcaccgaagaggctccaaaacccgtcttgcccgcaacctgatctcacctctgccgatgagctattcgtcgacggtgtcattctccctctccgcctcgtccctgcccacgagaagccgcccgactcgaacctgcgacccaaatcggaagagatttctgctccggacccagaaccagaggccctggtgtcaactgcagctccagtgctgactgcatctaagcggtggagggacatgttcaagaagaagagtgagagtagtgagaaagagaaggaggagaagaaggaccgaaagaaggaaaaccgttttcgcggagcagattcgccggaagtgcttgtacccgacccaaatttggggctccgggaggtgaacagcgccgtgttcaaggagcatcaatgtatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.78

Weight (kDa)

6.85

Isoelectric Point (pI)

61.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22190
fragaria_vesca	FvH4_3g01370
malus_domestica	MD05G1352700.v1.1 MD10G1327300.v1.1
prunus_persica	Prupe.4G014700_v2.0.a1
pyrus_communis	pycom05g31990 pycom10g27680
rosa_chinensis	RchiOBHm_Chr5g0001991
rosa_laevigata	RLG00000019620 RLG00000030987
rosa_multiflora	Rmu_co8161534.1_g000001 Rmu_sc0000279.1_g000042 Rmu_sc0000737.1_g000017 Rmu_sc0001248.1_g000004 Rmu_sc0002451.1_g000040 Rmu_sc0003473.1_g000004 Rmu_sc0022192.1_g000001 Rmu_sc0023655.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074360 Rroxscaffold_4G00295310
rosa_rugosa	Rorug04G0394200
rosa_samantha	Rh5AG015400 Rh5BG019000 Rh5CG016700 Rh5DG017300
rosa_wichuraiana	Rw5G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	483
AccIII	TCCGGA	1 cut(s)	334
AciI	CCGC	6 cut(s)	82, 206, 265, 290, 394, 483
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	520
AfaI	GTAC	1 cut(s)	510
AfiI	CCNNNNNNNGG	4 cut(s)	130, 466, 523, 524
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	2 cut(s)	412, 556
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	3 cut(s)	120, 235, 371
AluI	AGCT	3 cut(s)	120, 235, 371
AlwI	GGATC	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	334
AoxI	GGCC	3 cut(s)	20, 168, 351
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	520
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	5 cut(s)	60, 169, 337, 352, 457
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	4 cut(s)	115, 168, 211, 550
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	3 cut(s)	60, 337, 457
BanII	GRGCYC	1 cut(s)	531
BarI	GAAGNNNNNNTAC	2 cut(s)	492, 524
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	533
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	533
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	312
BisI	GCNGC	3 cut(s)	82, 290, 369
BlsI	GCNGC	3 cut(s)	83, 291, 370
Bme1390I	CCNGG	2 cut(s)	356, 533
Bme18I	GGWCC	3 cut(s)	60, 337, 457
BmgT120I	GGNCC	5 cut(s)	60, 169, 337, 352, 457
BmiI	GGNNCC	4 cut(s)	61, 188, 339, 530
BmrFI	CCNGG	2 cut(s)	356, 533
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	395, 571
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 466, 523, 524
Bse1I	ACTGG	2 cut(s)	37, 374
BseAI	TCCGGA	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	4 cut(s)	130, 466, 523, 524
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	37, 374
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	483
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	22, 170, 353
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	335, 497, 532
BslFI	GGGAC	2 cut(s)	257, 416
BslI	CCNNNNNNNGG	4 cut(s)	130, 466, 523, 524
BsmFI	GGGAC	2 cut(s)	257, 416
BsnI	GGCC	3 cut(s)	22, 170, 353
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp13I	TCCGGA	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	26, 36, 214
BspACI	CCGC	6 cut(s)	82, 206, 265, 290, 394, 483
BspANI	GGCC	3 cut(s)	22, 170, 353
BspCNI	CTCAG	1 cut(s)	144
BspEI	TCCGGA	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	4 cut(s)	61, 188, 339, 530
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	37, 374
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	3 cut(s)	26, 36, 214
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	248, 476
Bst6I	CTCTTC	3 cut(s)	176, 315, 413
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	118, 168, 206
BstDEI	CTNAG	2 cut(s)	152, 390
BstFNI	CGCG	1 cut(s)	483
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	3 cut(s)	29, 39, 217
BstMBI	GATC	3 cut(s)	26, 36, 214
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 502
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	354, 531
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	22, 170, 353
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	118, 168, 206
CfoI	GCGC	1 cut(s)	548
Cfr13I	GGNCC	5 cut(s)	60, 169, 337, 352, 457
Csp6I	GTAC	1 cut(s)	509
CviAII	CATG	1 cut(s)	406
CviQI	GTAC	1 cut(s)	509
DdeI	CTNAG	2 cut(s)	152, 390
DpnI	GATC	3 cut(s)	28, 38, 216
DpnII	GATC	3 cut(s)	26, 36, 214
EaeI	YGGCCR	1 cut(s)	20
Eam1104I	CTCTTC	3 cut(s)	176, 315, 413
EarI	CTCTTC	3 cut(s)	176, 315, 413
EciI	GGCGGA	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	531
Eco47I	GGWCC	3 cut(s)	60, 337, 457
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	531
FaeI	CATG	1 cut(s)	409
FaiI	YATR	2 cut(s)	129, 407
FaqI	GGGAC	2 cut(s)	257, 416
FatI	CATG	1 cut(s)	405
FauI	CCCGC	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	82, 290, 369
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	3 cut(s)	82, 290, 369
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	3 cut(s)	82, 290, 369
GsuI	CTGGAG	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	22, 170, 353
HapII	CCGG	3 cut(s)	335, 497, 532
HhaI	GCGC	1 cut(s)	548
Hin1II	CATG	1 cut(s)	409
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HincII	GTYRAC	2 cut(s)	244, 363
HindII	GTYRAC	2 cut(s)	244, 363
HinfI	GANTC	4 cut(s)	108, 154, 296, 491
HpaII	CCGG	3 cut(s)	335, 497, 532
HphI	GGTGA	4 cut(s)	115, 168, 211, 550
Hpy166II	GTNNAC	3 cut(s)	244, 363, 541
Hpy188I	TCNGA	3 cut(s)	64, 153, 319
Hpy188III	TCNNGA	2 cut(s)	335, 412
Hpy8I	GTNNAC	3 cut(s)	244, 363, 541
Hpy99I	CGWCG	2 cut(s)	245, 248
HpyAV	CCTTC	4 cut(s)	86, 436, 448, 460
HpyCH4III	ACNGT	2 cut(s)	248, 476
HpyCH4V	TGCA	2 cut(s)	368, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 502
HpyF3I	CTNAG	2 cut(s)	152, 390
Hsp92II	CATG	1 cut(s)	409
HspAI	GCGC	1 cut(s)	546
Kpn2I	TCCGGA	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	26, 36, 214
LmnI	GCTCC	6 cut(s)	192, 337, 376, 485, 534, 559
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	2 cut(s)	395, 571
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	28, 38, 216
MboI	GATC	3 cut(s)	26, 36, 214
MboII	GAAGA	6 cut(s)	146, 193, 332, 427, 430, 463
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	1 cut(s)	520
MlyI	GAGTC	2 cut(s)	163, 290
MmeI	TCCRAC	1 cut(s)	87
MroI	TCCGGA	1 cut(s)	334
MspI	CCGG	3 cut(s)	335, 497, 532
MspR9I	CCNGG	2 cut(s)	356, 533
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	19, 502
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	3 cut(s)	26, 36, 214
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	4 cut(s)	61, 188, 339, 530
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	174
NspI	RCATGY	1 cut(s)	409
NspV	TTCGAA	1 cut(s)	111
PciI	ACATGT	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	108, 491
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	531
PkrI	GCNGC	3 cut(s)	83, 291, 370
PleI	GAGTC	2 cut(s)	162, 290
PpsI	GAGTC	2 cut(s)	162, 290
PscI	ACATGT	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	4 cut(s)	61, 188, 339, 530
PspPI	GGNCC	5 cut(s)	60, 169, 337, 352, 457
PstI	CTGCAG	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	510
RsaNI	GTAC	1 cut(s)	509
SalI	GTCGAC	1 cut(s)	242
SatI	GCNGC	3 cut(s)	82, 290, 369
Sau3AI	GATC	3 cut(s)	26, 36, 214
Sau96I	GGNCC	5 cut(s)	60, 169, 337, 352, 457
SchI	GAGTC	2 cut(s)	163, 290
ScrFI	CCNGG	2 cut(s)	356, 533
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	9 cut(s)	8, 78, 122, 214, 224, 237, 306, 373, 540
SfaNI	GCATC	2 cut(s)	395, 571
SfcI	CTRYAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	111
SgrDI	CGTCGACG	1 cut(s)	242
SinI	GGWCC	3 cut(s)	60, 337, 457
Sse9I	AATT	1 cut(s)	520
SsiI	CCGC	6 cut(s)	82, 206, 265, 290, 394, 483
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	354, 531
TaaI	ACNGT	2 cut(s)	248, 476
TaqI	TCGA	5 cut(s)	29, 87, 111, 243, 299
TaqII	GACCGA	2 cut(s)	43, 474
TasI	AATT	1 cut(s)	520
TauI	GCSGC	2 cut(s)	84, 292
TfiI	GAWTC	2 cut(s)	108, 491
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	174
TspRI	CASTG	1 cut(s)	381
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	3 cut(s)	60, 337, 457
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.