Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022192.1

Orthogroup ID

OG0006877

Physical Location & Seq

Genomic Coordinates Forward (+)

3470 .. 3910

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022192.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ctggaggctccaaaacccgtcttacccccacctgatctcacctctattgatgagctatttgtcgatggtgtcattctcactctccgcctcgtccccgcccacgagaatccgcttgacccgaacatgcgacccatctcggaagagatttctactccggacctagaaccagaagcccaggtgtcaattgcagctccggtgctgactgcatccaaacggtggagggacatgttcaagaagaagagtgagggtagtgagaaagacaaggagaataagaaggagcagaagatcggcggagcagcacccaccggaacaagctcagctgagttgaacatcaatctctggccgttttcgcagattagatccgccagaaatggaaaagagggatttggagatatggaaaaggatctgcctttccggaggactatccaagcttcttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.1

Weight (kDa)

5.31

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22190
fragaria_vesca	FvH4_3g01370
malus_domestica	MD05G1352700.v1.1 MD10G1327300.v1.1
prunus_persica	Prupe.4G014700_v2.0.a1
pyrus_communis	pycom05g31990 pycom10g27680
rosa_chinensis	RchiOBHm_Chr5g0001991
rosa_laevigata	RLG00000019620 RLG00000030987
rosa_multiflora	Rmu_co8161534.1_g000001 Rmu_sc0000279.1_g000042 Rmu_sc0000737.1_g000017 Rmu_sc0001248.1_g000004 Rmu_sc0002451.1_g000040 Rmu_sc0003473.1_g000004 Rmu_sc0022192.1_g000001 Rmu_sc0023655.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074360 Rroxscaffold_4G00295310
rosa_rugosa	Rorug04G0394200
rosa_samantha	Rh5AG015400 Rh5BG019000 Rh5CG016700 Rh5DG017300
rosa_wichuraiana	Rw5G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	216
AccIII	TCCGGA	2 cut(s)	154, 414
AciI	CCGC	5 cut(s)	85, 96, 110, 291, 363
AclWI	GGATC	2 cut(s)	354, 411
AcoI	YGGCCR	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	232, 328
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	5 cut(s)	55, 191, 315, 320, 431
AluI	AGCT	5 cut(s)	55, 191, 315, 320, 431
AlwI	GGATC	2 cut(s)	354, 411
Aor13HI	TCCGGA	2 cut(s)	154, 414
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	188, 296
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	157
BauI	CACGAG	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	200, 308
BccI	CCATC	2 cut(s)	59, 140
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	2 cut(s)	189, 297
BlpI	GCTNAGC	1 cut(s)	316
BlsI	GCNGC	2 cut(s)	190, 298
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	23
Bpu1102I	GCTNAGC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	4 cut(s)	154, 193, 305, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
BseAI	TCCGGA	2 cut(s)	154, 414
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	312, 330
BseXI	GCAGC	2 cut(s)	200, 308
BshFI	GGCC	1 cut(s)	343
BsiSI	CCGG	4 cut(s)	155, 194, 306, 415
BslFI	GGGAC	2 cut(s)	77, 236
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmFI	GGGAC	2 cut(s)	77, 236
BsnI	GGCC	1 cut(s)	343
Bsp13I	TCCGGA	2 cut(s)	154, 414
Bsp143I	GATC	4 cut(s)	34, 285, 359, 403
Bsp1720I	GCTNAGC	1 cut(s)	316
BspACI	CCGC	5 cut(s)	85, 96, 110, 291, 363
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	2 cut(s)	313, 329
BspEI	TCCGGA	2 cut(s)	154, 414
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	354, 411
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	4 cut(s)	34, 285, 359, 403
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	2 cut(s)	135, 233
BstDEI	CTNAG	2 cut(s)	316, 321
BstF5I	GGATG	1 cut(s)	206
BstKTI	GATC	4 cut(s)	37, 288, 362, 406
BstMBI	GATC	4 cut(s)	34, 285, 359, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	127, 229
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	200, 308
BstX2I	RGATCY	2 cut(s)	359, 403
BstYI	RGATCY	2 cut(s)	359, 403
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	157
CviAII	CATG	2 cut(s)	124, 226
CviJI	RGCY	8 cut(s)	8, 55, 173, 191, 315, 320, 343, 431
CviKI_1	RGCY	8 cut(s)	8, 55, 173, 191, 315, 320, 343, 431
DdeI	CTNAG	2 cut(s)	316, 321
DpnI	GATC	4 cut(s)	36, 287, 361, 405
DpnII	GATC	4 cut(s)	34, 285, 359, 403
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	2 cut(s)	135, 233
EarI	CTCTTC	2 cut(s)	135, 233
EciI	GGCGGA	3 cut(s)	74, 306, 352
Eco47I	GGWCC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	127, 229
FaiI	YATR	3 cut(s)	125, 227, 395
FaqI	GGGAC	2 cut(s)	77, 236
FatI	CATG	2 cut(s)	123, 225
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	189, 297
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	2 cut(s)	189, 297
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	2 cut(s)	189, 297
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	4 cut(s)	155, 194, 306, 415
Hin1II	CATG	2 cut(s)	127, 229
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	4 cut(s)	155, 194, 306, 415
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	3 cut(s)	155, 232, 415
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	188, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	2 cut(s)	316, 321
Hsp92II	CATG	2 cut(s)	127, 229
Kpn2I	TCCGGA	2 cut(s)	154, 414
Kzo9I	GATC	4 cut(s)	34, 285, 359, 403
LmnI	GCTCC	4 cut(s)	13, 196, 277, 293
Lsp1109I	GCAGC	2 cut(s)	200, 308
LweI	GCATC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	161
MalI	GATC	4 cut(s)	36, 287, 361, 405
MboI	GATC	4 cut(s)	34, 285, 359, 403
MboII	GAAGA	5 cut(s)	152, 247, 250, 295, 426
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	2 cut(s)	359, 403
MluCI	AATT	1 cut(s)	183
MnlI	CCTC	6 cut(s)	52, 98, 213, 238, 373, 411
MroI	TCCGGA	2 cut(s)	154, 414
MseI	TTAA	1 cut(s)	439
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	4 cut(s)	155, 194, 306, 415
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	349
NdeII	GATC	4 cut(s)	34, 285, 359, 403
NlaIII	CATG	2 cut(s)	127, 229
NlaIV	GGNNCC	1 cut(s)	9
NspI	RCATGY	2 cut(s)	127, 229
PciI	ACATGT	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	190, 298
PscI	ACATGT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	359, 403
PvuII	CAGCTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	2 cut(s)	189, 297
Sau3AI	GATC	4 cut(s)	34, 285, 359, 403
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	9 cut(s)	34, 44, 57, 162, 180, 193, 317, 322, 433
SfaNI	GCATC	1 cut(s)	215
SinI	GGWCC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	5 cut(s)	85, 96, 110, 291, 363
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TseI	GCWGC	2 cut(s)	188, 296
Van91I	CCANNNNNTGG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	2 cut(s)	127, 229
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.