Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006877

Physical Location & Seq

Genomic Coordinates Reverse (-)

40703574 .. 40704656

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1327300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAGCACAGCCCCAAATTCAAACCCCTCCTTTCACAGAGCAGCAGTCGAAGAAGGCGAACCAGCACCGATTCGAACTCTCCCGAGTTCGAGTTCTGGAGAAACCCCTCTTGCCCTCAGCCCAATCTCCTCTCCGCCGACGAGCTCTTCGTCGATGGCGTCCTCCTCCCTCTCCACCTCCTCCCCCGGCCTCTCCCTAACAACTCCGACCCACCTGACCCATATCCAAGATTTTCCTACCCAAATACACAACCCATCTCGCAACCACCTGTGCCTGACCCAGAACCCTTATTGGAACCGGACCTGGAATCGGAACCGGGCCCAGGACCCGAGTTGTCAGCTGCTCCGGTTCTAACCGCATCTAAGCGTTGGAGAGACATTTTCAAGAAGGGGGAGAAGAAATCAGTCAAAGGCGACGAGATAGATAAAGACAAAGACAAGAAGAAAGAGCGGAAGGGCGGCAGGAGCGGAGCGAGCTCGGCCGAGCTGAACATTAATATATGGCCATTTTCGCGCAGTAGATCCGCCGGAAACGTGTATACCCGACCCAAACCATTCGGAGCTCAAGCGACCCGAAGGGTGAACAGTGCGCCGTGTTCAAGGAGCAACTCAACCGGGGATTCGAAGTCTAGAAAGTGGCCGCCCGCGAGTCCGGGTCGGCCCGGAGTCCATTTGGGTCGGAGCAGCCCGGTTTGGCAGGTCAGGCGTGGAGCCTCCGCGGCTGCAAAGAGCAACTCCGAACCACAAGCTCGAAATGCTGAAAAGGGCACAAAACAAGAAGTACCCGAGATTCGCCGGAGCAAAAAAACCGCCGGATCAGTTGTCGCCGGCGGCAGTGGCTCGAAAGCTAGAGTCTTGAATTTGAATGTTCCGATCTGTATTGGGTACAGAAGCCATTTGAGCTGTAGAAGTGAGAATAGTGCTGTAGGAGTCGGGGTCGGCGGTGGCAGCAGCAGCATCAACCTTCGTGGTGGTGTTATCGGCGGCGTTAACGGTGGAGGTGGCAATGGCGTCGGTGGGAATGGTGGGGCTGGTGGTAATCTTTTTAATCTGCGCAGCCTTTTCACTAAGAAGGTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

38.41

Weight (kDa)

10.22

Isoelectric Point (pI)

68.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22190
fragaria_vesca	FvH4_3g01370
malus_domestica	MD05G1352700.v1.1 MD10G1327300.v1.1
prunus_persica	Prupe.4G014700_v2.0.a1
pyrus_communis	pycom05g31990 pycom10g27680
rosa_chinensis	RchiOBHm_Chr5g0001991
rosa_laevigata	RLG00000019620 RLG00000030987
rosa_multiflora	Rmu_co8161534.1_g000001 Rmu_sc0000279.1_g000042 Rmu_sc0000737.1_g000017 Rmu_sc0001248.1_g000004 Rmu_sc0002451.1_g000040 Rmu_sc0003473.1_g000004 Rmu_sc0022192.1_g000001 Rmu_sc0023655.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074360 Rroxscaffold_4G00295310
rosa_rugosa	Rorug04G0394200
rosa_samantha	Rh5AG015400 Rh5BG019000 Rh5CG016700 Rh5DG017300
rosa_wichuraiana	Rw5G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1055
Acc36I	ACCTGC	1 cut(s)	688
AccBSI	CCGCTC	2 cut(s)	451, 468
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	3 cut(s)	514, 647, 719
AclWI	GGATC	2 cut(s)	516, 823
AcoI	YGGCCR	3 cut(s)	480, 503, 638
AcsI	RAATTY	2 cut(s)	17, 859
AcyI	GRCGYC	2 cut(s)	159, 1011
AfaI	GTAC	2 cut(s)	783, 887
AfiI	CCNNNNNNNGG	2 cut(s)	310, 323
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	5 cut(s)	22, 385, 600, 859, 865
AjnI	CCWGG	2 cut(s)	303, 322
AluBI	AGCT	8 cut(s)	145, 341, 477, 487, 563, 749, 848, 903
AluI	AGCT	8 cut(s)	145, 341, 477, 487, 563, 749, 848, 903
Alw21I	GWGCWC	4 cut(s)	9, 147, 479, 565
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	516, 823
Ama87I	CYCGRG	3 cut(s)	83, 329, 785
AoxI	GGCC	6 cut(s)	188, 319, 480, 503, 638, 659
ApaI	GGGCCC	1 cut(s)	323
ApeKI	GCWGC	8 cut(s)	42, 341, 684, 722, 948, 951, 954, 1056
ApoI	RAATTY	2 cut(s)	17, 859
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AseI	ATTAAT	1 cut(s)	495
AspLEI	GCGC	3 cut(s)	516, 592, 1056
AspS9I	GGNCC	5 cut(s)	301, 319, 320, 326, 660
AsuC2I	CCSGG	6 cut(s)	187, 318, 616, 654, 663, 689
AsuHPI	GGTGA	1 cut(s)	592
AsuII	TTCGAA	2 cut(s)	74, 623
AvaI	CYCGRG	3 cut(s)	83, 329, 785
AvaII	GGWCC	2 cut(s)	301, 326
BaeGI	GKGCMC	2 cut(s)	323, 770
BalI	TGGCCA	1 cut(s)	505
BanII	GRGCYC	4 cut(s)	147, 323, 479, 565
Bbv12I	GWGCWC	4 cut(s)	9, 147, 479, 565
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	8 cut(s)	54, 328, 696, 709, 960, 963, 966, 1068
BccI	CCATC	2 cut(s)	149, 263
BceAI	ACGGC	1 cut(s)	577
BcgI	CGANNNNNNTGC	2 cut(s)	994, 1028
BciT130I	CCWGG	2 cut(s)	305, 324
BcnI	CCSGG	6 cut(s)	187, 318, 616, 654, 663, 689
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	2 cut(s)	630, 849
BfmI	CTRYAG	2 cut(s)	904, 924
BfuAI	ACCTGC	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	719
Bme1390I	CCNGG	8 cut(s)	187, 305, 318, 324, 616, 654, 663, 689
Bme18I	GGWCC	2 cut(s)	301, 326
BmeT110I	CYCGRG	3 cut(s)	83, 329, 785
BmgT120I	GGNCC	5 cut(s)	301, 319, 320, 326, 660
BmiI	GGNNCC	5 cut(s)	297, 315, 321, 328, 712
BmrFI	CCNGG	8 cut(s)	187, 305, 318, 324, 616, 654, 663, 689
BmsI	GCATC	2 cut(s)	368, 966
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	2 cut(s)	74, 623
BpuEI	CTTGAG	1 cut(s)	549
BpuMI	CCSGG	6 cut(s)	187, 318, 616, 654, 663, 689
BsaHI	GRCGYC	2 cut(s)	159, 1011
BsaJI	CCNNGG	4 cut(s)	185, 322, 615, 717
BsaWI	WCCGGW	2 cut(s)	298, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 323
Bse118I	RCCGGY	1 cut(s)	827
Bse3DI	GCAATG	1 cut(s)	1012
BseBI	CCWGG	2 cut(s)	305, 324
BseDI	CCNNGG	4 cut(s)	185, 322, 615, 717
BseLI	CCNNNNNNNGG	2 cut(s)	310, 323
BseMI	GCAATG	1 cut(s)	1012
BseMII	CTCAG	1 cut(s)	131
BseRI	GAGGAG	3 cut(s)	119, 155, 170
BseSI	GKGCMC	2 cut(s)	323, 770
BseX3I	CGGCCG	1 cut(s)	480
BseXI	GCAGC	8 cut(s)	54, 328, 696, 709, 960, 963, 966, 1068
Bsh1236I	CGCG	3 cut(s)	514, 647, 719
Bsh1285I	CGRYCG	1 cut(s)	483
BshFI	GGCC	6 cut(s)	190, 321, 482, 505, 640, 661
BsiEI	CGRYCG	1 cut(s)	483
BsiHKAI	GWGCWC	4 cut(s)	9, 147, 479, 565
BsiHKCI	CYCGRG	3 cut(s)	83, 329, 785
BslI	CCNNNNNNNGG	2 cut(s)	310, 323
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	6 cut(s)	190, 321, 482, 505, 640, 661
BsoBI	CYCGRG	3 cut(s)	83, 329, 785
Bsp119I	TTCGAA	2 cut(s)	74, 623
Bsp120I	GGGCCC	1 cut(s)	319
Bsp1286I	GDGCHC	6 cut(s)	9, 147, 323, 479, 565, 770
Bsp143I	GATC	3 cut(s)	521, 815, 873
BspANI	GGCC	6 cut(s)	190, 321, 482, 505, 640, 661
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	3 cut(s)	514, 647, 719
BspLI	GGNNCC	5 cut(s)	297, 315, 321, 328, 712
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	2 cut(s)	516, 823
BspQI	GCTCTTC	1 cut(s)	152
BspT104I	TTCGAA	2 cut(s)	74, 623
BsrBI	CCGCTC	2 cut(s)	451, 468
BsrDI	GCAATG	1 cut(s)	1012
BsrFI	RCCGGY	1 cut(s)	827
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	4 cut(s)	185, 322, 615, 717
BssMI	GATC	3 cut(s)	521, 815, 873
BssNAI	GTATAC	1 cut(s)	540
BssNI	GRCGYC	2 cut(s)	159, 1011
Bst1107I	GTATAC	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	305, 324
Bst4CI	ACNGT	2 cut(s)	587, 995
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	159, 1011
BstBI	TTCGAA	2 cut(s)	74, 623
BstC8I	GCNNGC	3 cut(s)	475, 645, 829
BstDEI	CTNAG	3 cut(s)	117, 363, 1068
BstDSI	CCRYGG	1 cut(s)	717
BstFNI	CGCG	3 cut(s)	514, 647, 719
BstHHI	GCGC	3 cut(s)	516, 592, 1056
BstKTI	GATC	3 cut(s)	524, 818, 876
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	3 cut(s)	521, 815, 873
BstMCI	CGRYCG	1 cut(s)	483
BstNI	CCWGG	2 cut(s)	305, 324
BstSCI	CCNGG	8 cut(s)	185, 303, 316, 322, 614, 652, 661, 687
BstSFI	CTRYAG	2 cut(s)	904, 924
BstSLI	GKGCMC	2 cut(s)	323, 770
BstUI	CGCG	3 cut(s)	514, 647, 719
BstV1I	GCAGC	8 cut(s)	54, 328, 696, 709, 960, 963, 966, 1068
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BstZ17I	GTATAC	1 cut(s)	540
BstZI	CGGCCG	1 cut(s)	480
BsuRI	GGCC	6 cut(s)	190, 321, 482, 505, 640, 661
BtgI	CCRYGG	1 cut(s)	717
BtsI	GCAGTG	1 cut(s)	841
BtsIMutI	CAGTG	2 cut(s)	592, 841
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	3 cut(s)	475, 645, 829
CfoI	GCGC	3 cut(s)	516, 592, 1056
Cfr10I	RCCGGY	1 cut(s)	827
Cfr13I	GGNCC	5 cut(s)	301, 319, 320, 326, 660
Cfr42I	CCGCGG	1 cut(s)	720
CseI	GACGC	2 cut(s)	148, 1000
Csp6I	GTAC	2 cut(s)	782, 886
CspCI	CAANNNNNGTGG	2 cut(s)	949, 984
CviQI	GTAC	2 cut(s)	782, 886
DdeI	CTNAG	3 cut(s)	117, 363, 1068
DpnI	GATC	3 cut(s)	523, 817, 875
DpnII	GATC	3 cut(s)	521, 815, 873
EaeI	YGGCCR	3 cut(s)	480, 503, 638
EagI	CGGCCG	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	2 cut(s)	124, 514
Ecl136II	GAGCTC	3 cut(s)	145, 477, 563
EclXI	CGGCCG	1 cut(s)	480
Eco24I	GRGCYC	4 cut(s)	147, 323, 479, 565
Eco47I	GGWCC	2 cut(s)	301, 326
Eco52I	CGGCCG	1 cut(s)	480
Eco53kI	GAGCTC	3 cut(s)	145, 477, 563
Eco88I	CYCGRG	3 cut(s)	83, 329, 785
EcoICRI	GAGCTC	3 cut(s)	145, 477, 563
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	303, 322
EcoT38I	GRGCYC	4 cut(s)	147, 323, 479, 565
FaiI	YATR	4 cut(s)	223, 500, 502, 540
FauI	CCCGC	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	539
FriOI	GRGCYC	4 cut(s)	147, 323, 479, 565
FspBI	CTAG	2 cut(s)	630, 849
FspI	TGCGCA	1 cut(s)	1055
GlaI	GCGC	3 cut(s)	515, 591, 1055
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	6 cut(s)	190, 321, 482, 505, 640, 661
HgaI	GACGC	2 cut(s)	148, 1000
HhaI	GCGC	3 cut(s)	516, 592, 1056
Hin1I	GRCGYC	2 cut(s)	159, 1011
Hin6I	GCGC	3 cut(s)	514, 590, 1054
HinP1I	GCGC	3 cut(s)	514, 590, 1054
HincII	GTYRAC	1 cut(s)	991
HindII	GTYRAC	1 cut(s)	991
HinfI	GANTC	8 cut(s)	71, 308, 620, 649, 666, 790, 852, 930
HpaI	GTTAAC	1 cut(s)	991
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	3 cut(s)	540, 583, 991
Hpy188I	TCNGA	6 cut(s)	208, 313, 560, 681, 739, 873
Hpy188III	TCNNGA	5 cut(s)	83, 97, 385, 630, 856
Hpy8I	GTNNAC	3 cut(s)	540, 583, 991
Hpy99I	CGWCG	4 cut(s)	143, 155, 419, 1016
HpyAV	CCTTC	6 cut(s)	48, 382, 448, 570, 974, 1066
HpyCH4III	ACNGT	2 cut(s)	587, 995
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	1 cut(s)	725
HpyF3I	CTNAG	3 cut(s)	117, 363, 1068
HpySE526I	ACGT	1 cut(s)	534
Hsp92I	GRCGYC	2 cut(s)	159, 1011
HspAI	GCGC	3 cut(s)	514, 590, 1054
KroI	GCCGGC	1 cut(s)	827
KroNI	GCCGGC	1 cut(s)	829
KspAI	GTTAAC	1 cut(s)	991
KspI	CCGCGG	1 cut(s)	720
Kzo9I	GATC	3 cut(s)	521, 815, 873
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	9 cut(s)	4, 349, 465, 470, 560, 603, 681, 710, 798
Lsp1109I	GCAGC	8 cut(s)	54, 328, 696, 709, 960, 963, 966, 1068
LweI	GCATC	2 cut(s)	368, 966
MaeI	CTAG	2 cut(s)	630, 849
MaeII	ACGT	1 cut(s)	534
MalI	GATC	3 cut(s)	523, 817, 875
MbiI	CCGCTC	2 cut(s)	451, 468
MboI	GATC	3 cut(s)	521, 815, 873
MboII	GAAGA	4 cut(s)	63, 139, 409, 454
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	6 cut(s)	9, 147, 323, 479, 565, 770
MlsI	TGGCCA	1 cut(s)	505
MluCI	AATT	2 cut(s)	17, 859
MluNI	TGGCCA	1 cut(s)	505
MlyI	GAGTC	4 cut(s)	658, 675, 861, 939
MmeI	TCCRAC	3 cut(s)	231, 350, 659
Mox20I	TGGCCA	1 cut(s)	505
MreI	CGCCGGCG	1 cut(s)	827
MroNI	GCCGGC	1 cut(s)	827
MscI	TGGCCA	1 cut(s)	505
MseI	TTAA	4 cut(s)	495, 990, 1047, 1081
Msp20I	TGGCCA	1 cut(s)	505
MspA1I	CMGCKG	2 cut(s)	341, 719
MspR9I	CCNGG	8 cut(s)	187, 305, 318, 324, 616, 654, 663, 689
MvaI	CCWGG	2 cut(s)	305, 324
MvnI	CGCG	3 cut(s)	514, 647, 719
NaeI	GCCGGC	1 cut(s)	829
NciI	CCSGG	6 cut(s)	187, 318, 616, 654, 663, 689
NdeII	GATC	3 cut(s)	521, 815, 873
NgoMIV	GCCGGC	1 cut(s)	827
NlaIV	GGNNCC	5 cut(s)	297, 315, 321, 328, 712
NmeAIII	GCCGAG	2 cut(s)	458, 508
NsbI	TGCGCA	1 cut(s)	1055
NspV	TTCGAA	2 cut(s)	74, 623
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	3 cut(s)	55, 147, 156
PdiI	GCCGGC	1 cut(s)	829
PfeI	GAWTC	4 cut(s)	71, 308, 620, 790
PleI	GAGTC	4 cut(s)	657, 674, 860, 938
PpsI	GAGTC	4 cut(s)	657, 674, 860, 938
PpuMI	RGGWCCY	1 cut(s)	326
PshBI	ATTAAT	1 cut(s)	495
Psp124BI	GAGCTC	3 cut(s)	147, 479, 565
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	303, 322
PspGI	CCWGG	2 cut(s)	303, 322
PspN4I	GGNNCC	5 cut(s)	297, 315, 321, 328, 712
PspOMI	GGGCCC	1 cut(s)	319
PspPI	GGNCC	5 cut(s)	301, 319, 320, 326, 660
PspPPI	RGGWCCY	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	521
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	2 cut(s)	783, 887
RsaNI	GTAC	2 cut(s)	782, 886
SacI	GAGCTC	3 cut(s)	147, 479, 565
SacII	CCGCGG	1 cut(s)	720
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	4 cut(s)	495, 990, 1047, 1081
Sau3AI	GATC	3 cut(s)	521, 815, 873
Sau96I	GGNCC	5 cut(s)	301, 319, 320, 326, 660
SchI	GAGTC	4 cut(s)	658, 675, 861, 939
ScrFI	CCNGG	8 cut(s)	187, 305, 318, 324, 616, 654, 663, 689
SduI	GDGCHC	6 cut(s)	9, 147, 323, 479, 565, 770
SfaNI	GCATC	2 cut(s)	368, 966
SfcI	CTRYAG	2 cut(s)	904, 924
Sfr303I	CCGCGG	1 cut(s)	720
SfuI	TTCGAA	2 cut(s)	74, 623
SgrAI	CRCCGGYG	1 cut(s)	827
SgrBI	CCGCGG	1 cut(s)	720
SinI	GGWCC	2 cut(s)	301, 326
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	2 cut(s)	17, 859
SspMI	CTAG	2 cut(s)	630, 849
SstI	GAGCTC	3 cut(s)	147, 479, 565
StyD4I	CCNGG	8 cut(s)	185, 303, 316, 322, 614, 652, 661, 687
TaaI	ACNGT	2 cut(s)	587, 995
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	7 cut(s)	49, 74, 90, 153, 623, 751, 842
TasI	AATT	2 cut(s)	17, 859
TauI	GCSGC	5 cut(s)	462, 643, 722, 834, 987
TfiI	GAWTC	4 cut(s)	71, 308, 620, 790
Tru1I	TTAA	4 cut(s)	495, 990, 1047, 1081
Tru9I	TTAA	4 cut(s)	495, 990, 1047, 1081
TscAI	CASTG	2 cut(s)	592, 841
TseI	GCWGC	8 cut(s)	42, 341, 684, 722, 948, 951, 954, 1056
TspRI	CASTG	2 cut(s)	592, 841
VpaK11BI	GGWCC	2 cut(s)	301, 326
VspI	ATTAAT	1 cut(s)	495
XapI	RAATTY	2 cut(s)	17, 859
XbaI	TCTAGA	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	2 cut(s)	630, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.