Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006877

Physical Location & Seq

Genomic Coordinates Reverse (-)

95385506 .. 95388169

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCAGATGGCTCCAGATTCAAACCCTACAGTAGCAACACTCAAAGAAGCCGAACCAGCACCGACTCCAGCTCCCCGGAATTCGAGTTCTGGAGGCTCCAAAACCCGTCTTGCCCGCAACCCGATCTCATCTCTGCCGATGAACTATTCGTCGACGGTGTCATTCTCCCTCTCCGCCTCGTCCCCGCCCCCAAAAACCCGCCCGACCCGAACCCGCGCCCCGACTCGGAAGAGATTTCTGCTCCTGACCCAGAACCGGAACCCGGCCCCGAAGCCCAGGTGTCGACCGGAGCTCTGGTGCTGACCGCATCGAAGCGGTGGAGGGACATGTTCAAGAAGAAGAGTGAGGGTAGTGAGAAGGAGAAGGAGAAGGAGAAGAAGAAGGAGCGGAAGAGCGGCGGAGGAGCCGCCGGAGCGAGCTCGGCGGAGCTGAACATCAATCTGTGGCCGTTTTCGCGTAGCAGATCCGCCGGAAATGCTTGTACCCGACCCAAATTCGGGGCTCCGGGAACCCGGAAGGTGAACAGCGCGCCGTGCTCGAGGAGTAACTCGACGGGCGAGTCCAAGTTAACGAGGAAGTGGCCGGCGAGTCCGGGTCGGGCCGGAGTCCACTTGGGTCGGAGCAGCCCGGTTTGGCAGGTCCGGCGTGGAGCCTCAACTCTGGGTAAAACCTCCGAAACCCAAGTCAAGAATGCTGAAAAGAGCACCAAAAAAGAAGCACCCGAAACTCGCGGGAGTAAAACCACCGCATCCGGCGGCGGTCGCGGCGGAGGAGGTGGTGCGAAATCCAGAGTCTTGAACTTGAATGTTCCGACGTGTATCGGGTACAGAAGCCATTTGAGTTGTAGAAGTGACGTCATGAATAGTGCTGTAGGAATCGGCGGCAGTAGTGGTAGCAACAACCACCGTGGCGCCGCCGCTGGCGGTGGCGGAGATAGTAGTAACGCTGCTGGGGCTGGTAGTAATCTTTTTAATCTGCGCAGCCTTTTCTCTAAGAAGGTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

35.27

Weight (kDa)

10.04

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22190
fragaria_vesca	FvH4_3g01370
malus_domestica	MD05G1352700.v1.1 MD10G1327300.v1.1
prunus_persica	Prupe.4G014700_v2.0.a1
pyrus_communis	pycom05g31990 pycom10g27680
rosa_chinensis	RchiOBHm_Chr5g0001991
rosa_laevigata	RLG00000019620 RLG00000030987
rosa_multiflora	Rmu_co8161534.1_g000001 Rmu_sc0000279.1_g000042 Rmu_sc0000737.1_g000017 Rmu_sc0001248.1_g000004 Rmu_sc0002451.1_g000040 Rmu_sc0003473.1_g000004 Rmu_sc0022192.1_g000001 Rmu_sc0023655.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074360 Rroxscaffold_4G00295310
rosa_rugosa	Rorug04G0394200
rosa_samantha	Rh5AG015400 Rh5BG019000 Rh5CG016700 Rh5DG017300
rosa_wichuraiana	Rw5G001510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	559
AatII	GACGTC	1 cut(s)	858
Acc16I	TGCGCA	1 cut(s)	980
Acc36I	ACCTGC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	911
AccBSI	CCGCTC	2 cut(s)	388, 396
AccI	GTMKAC	2 cut(s)	153, 284
AccII	CGCG	5 cut(s)	217, 457, 530, 732, 765
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	2 cut(s)	446, 581
AcsI	RAATTY	2 cut(s)	80, 494
AcyI	GRCGYC	2 cut(s)	855, 912
AfaI	GTAC	2 cut(s)	484, 827
AfiI	CCNNNNNNNGG	5 cut(s)	226, 256, 263, 497, 498
AflIII	ACRYGT	2 cut(s)	327, 815
AgsI	TTSAA	4 cut(s)	22, 334, 799, 805
AjiI	CACGTC	1 cut(s)	816
AjnI	CCWGG	1 cut(s)	276
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	4 cut(s)	72, 293, 420, 430
AluI	AGCT	4 cut(s)	72, 293, 420, 430
Alw21I	GWGCWC	4 cut(s)	295, 422, 539, 707
AlwI	GGATC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	4 cut(s)	265, 446, 581, 600
ApeKI	GCWGC	3 cut(s)	624, 947, 981
ApoI	RAATTY	2 cut(s)	80, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	669, 701
AspLEI	GCGC	5 cut(s)	219, 530, 532, 914, 981
AspS9I	GGNCC	3 cut(s)	266, 600, 640
AsuC2I	CCSGG	6 cut(s)	77, 264, 507, 514, 594, 629
AsuHPI	GGTGA	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	538
AvaII	GGWCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	911
BanII	GRGCYC	3 cut(s)	295, 422, 505
Bbv12I	GWGCWC	4 cut(s)	295, 422, 539, 707
BbvI	GCAGC	3 cut(s)	636, 934, 993
BccI	CCATC	1 cut(s)	2
BceAI	ACGGC	2 cut(s)	433, 517
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	6 cut(s)	77, 264, 507, 514, 594, 629
BfmI	CTRYAG	2 cut(s)	28, 870
BfoI	RGCGCY	1 cut(s)	915
BfuAI	ACCTGC	1 cut(s)	628
Bme1390I	CCNGG	7 cut(s)	77, 264, 278, 507, 514, 594, 629
Bme18I	GGWCC	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	538
BmgBI	CACGTC	1 cut(s)	816
BmgT120I	GGNCC	3 cut(s)	266, 600, 640
BmiI	GGNNCC	9 cut(s)	13, 98, 261, 268, 406, 504, 511, 652, 913
BmrFI	CCNGG	7 cut(s)	77, 264, 278, 507, 514, 594, 629
BmsI	GCATC	2 cut(s)	317, 758
BpmI	CTGGAG	2 cut(s)	52, 112
BpuMI	CCSGG	6 cut(s)	77, 264, 507, 514, 594, 629
BsaHI	GRCGYC	2 cut(s)	855, 912
BsaJI	CCNNGG	3 cut(s)	75, 276, 907
BsaWI	WCCGGW	2 cut(s)	256, 287
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 282, 312
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 256, 263, 497, 498
Bse118I	RCCGGY	1 cut(s)	583
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	75, 276, 907
BseGI	GGATG	1 cut(s)	749
BseLI	CCNNNNNNNGG	5 cut(s)	226, 256, 263, 497, 498
BsePI	GCGCGC	1 cut(s)	528
BseRI	GAGGAG	3 cut(s)	417, 556, 786
BseXI	GCAGC	3 cut(s)	636, 934, 993
BseYI	CCCAGC	1 cut(s)	950
Bsh1236I	CGCG	5 cut(s)	217, 457, 530, 732, 765
Bsh1285I	CGRYCG	2 cut(s)	288, 763
BshFI	GGCC	4 cut(s)	267, 448, 583, 602
BshNI	GGYRCC	1 cut(s)	911
BsiEI	CGRYCG	2 cut(s)	288, 763
BsiHKAI	GWGCWC	4 cut(s)	295, 422, 539, 707
BsiHKCI	CYCGRG	1 cut(s)	538
BslFI	GGGAC	2 cut(s)	167, 338
BslI	CCNNNNNNNGG	5 cut(s)	226, 256, 263, 497, 498
BsmFI	GGGAC	2 cut(s)	167, 338
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	4 cut(s)	267, 448, 583, 602
BsoBI	CYCGRG	1 cut(s)	538
Bsp1286I	GDGCHC	5 cut(s)	295, 422, 505, 539, 707
Bsp143I	GATC	2 cut(s)	124, 464
BspANI	GGCC	4 cut(s)	267, 448, 583, 602
BspFNI	CGCG	5 cut(s)	217, 457, 530, 732, 765
BspHI	TCATGA	1 cut(s)	858
BspLI	GGNNCC	9 cut(s)	13, 98, 261, 268, 406, 504, 511, 652, 913
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	1 cut(s)	459
BspQI	GCTCTTC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	911
BsrBI	CCGCTC	2 cut(s)	388, 396
BsrFI	RCCGGY	1 cut(s)	583
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	3 cut(s)	75, 276, 907
BssHII	GCGCGC	1 cut(s)	528
BssMI	GATC	2 cut(s)	124, 464
BssNI	GRCGYC	2 cut(s)	855, 912
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	3 cut(s)	32, 158, 908
Bst6I	CTCTTC	3 cut(s)	225, 335, 386
BstACI	GRCGYC	2 cut(s)	855, 912
BstC8I	GCNNGC	5 cut(s)	116, 418, 530, 585, 922
BstDEI	CTNAG	1 cut(s)	993
BstDSI	CCRYGG	1 cut(s)	907
BstF5I	GGATG	1 cut(s)	749
BstFNI	CGCG	5 cut(s)	217, 457, 530, 732, 765
BstH2I	RGCGCY	1 cut(s)	915
BstHHI	GCGC	5 cut(s)	219, 530, 532, 914, 981
BstKTI	GATC	2 cut(s)	127, 467
BstMBI	GATC	2 cut(s)	124, 464
BstMCI	CGRYCG	2 cut(s)	288, 763
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	7 cut(s)	75, 262, 276, 505, 512, 592, 627
BstSFI	CTRYAG	2 cut(s)	28, 870
BstUI	CGCG	5 cut(s)	217, 457, 530, 732, 765
BstV1I	GCAGC	3 cut(s)	636, 934, 993
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	4 cut(s)	267, 448, 583, 602
BtgI	CCRYGG	1 cut(s)	907
BtrI	CACGTC	1 cut(s)	816
BtsCI	GGATG	1 cut(s)	749
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	5 cut(s)	116, 418, 530, 585, 922
CciI	TCATGA	1 cut(s)	858
CfoI	GCGC	5 cut(s)	219, 530, 532, 914, 981
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	3 cut(s)	266, 600, 640
Csp6I	GTAC	2 cut(s)	483, 826
CspCI	CAANNNNNGTGG	2 cut(s)	889, 924
CviAII	CATG	2 cut(s)	328, 859
CviQI	GTAC	2 cut(s)	483, 826
DdeI	CTNAG	1 cut(s)	993
DinI	GGCGCC	1 cut(s)	913
DpnI	GATC	2 cut(s)	126, 466
DpnII	GATC	2 cut(s)	124, 464
DrdI	GACNNNNNNGTC	1 cut(s)	559
DseDI	GACNNNNNNGTC	1 cut(s)	559
EaeI	YGGCCR	2 cut(s)	446, 581
Eam1104I	CTCTTC	3 cut(s)	225, 335, 386
EarI	CTCTTC	3 cut(s)	225, 335, 386
EciI	GGCGGA	6 cut(s)	164, 414, 440, 457, 783, 945
Ecl136II	GAGCTC	2 cut(s)	293, 420
Eco24I	GRGCYC	3 cut(s)	295, 422, 505
Eco47I	GGWCC	1 cut(s)	640
Eco53kI	GAGCTC	2 cut(s)	293, 420
Eco88I	CYCGRG	1 cut(s)	538
EcoICRI	GAGCTC	2 cut(s)	293, 420
EcoRI	GAATTC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	276
EcoT38I	GRGCYC	3 cut(s)	295, 422, 505
EgeI	GGCGCC	1 cut(s)	913
EheI	GGCGCC	1 cut(s)	913
FaeI	CATG	2 cut(s)	331, 862
FaiI	YATR	2 cut(s)	329, 860
FaqI	GGGAC	2 cut(s)	167, 338
FatI	CATG	2 cut(s)	327, 858
FauI	CCCGC	5 cut(s)	123, 193, 207, 222, 725
FblI	GTMKAC	2 cut(s)	153, 284
FokI	GGATG	1 cut(s)	736
FriOI	GRGCYC	3 cut(s)	295, 422, 505
FspI	TGCGCA	1 cut(s)	980
GlaI	GCGC	5 cut(s)	218, 529, 531, 913, 980
GsaI	CCCAGC	1 cut(s)	954
GsuI	CTGGAG	2 cut(s)	52, 112
HaeII	RGCGCY	1 cut(s)	915
HaeIII	GGCC	4 cut(s)	267, 448, 583, 602
HhaI	GCGC	5 cut(s)	219, 530, 532, 914, 981
Hin1I	GRCGYC	2 cut(s)	855, 912
Hin1II	CATG	2 cut(s)	331, 862
Hin6I	GCGC	5 cut(s)	217, 528, 530, 912, 979
HinP1I	GCGC	5 cut(s)	217, 528, 530, 912, 979
HincII	GTYRAC	3 cut(s)	154, 285, 570
HindII	GTYRAC	3 cut(s)	154, 285, 570
HinfI	GANTC	8 cut(s)	18, 65, 224, 560, 589, 606, 792, 876
HpaI	GTTAAC	1 cut(s)	570
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	5 cut(s)	154, 285, 523, 570, 610
Hpy188I	TCNGA	4 cut(s)	229, 621, 676, 813
Hpy188III	TCNNGA	8 cut(s)	15, 91, 245, 334, 688, 789, 796, 859
Hpy8I	GTNNAC	5 cut(s)	154, 285, 523, 570, 610
Hpy99I	CGWCG	4 cut(s)	155, 158, 556, 817
HpyAV	CCTTC	6 cut(s)	352, 358, 364, 376, 511, 991
HpyCH4III	ACNGT	3 cut(s)	32, 158, 908
HpyCH4IV	ACGT	2 cut(s)	815, 855
HpyF3I	CTNAG	1 cut(s)	993
HpySE526I	ACGT	2 cut(s)	815, 855
Hsp92I	GRCGYC	2 cut(s)	855, 912
Hsp92II	CATG	2 cut(s)	331, 862
HspAI	GCGC	5 cut(s)	217, 528, 530, 912, 979
KasI	GGCGCC	1 cut(s)	911
KroI	GCCGGC	1 cut(s)	583
KroNI	GCCGGC	1 cut(s)	585
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	2 cut(s)	124, 464
LguI	GCTCTTC	1 cut(s)	386
Lsp1109I	GCAGC	3 cut(s)	636, 934, 993
LweI	GCATC	2 cut(s)	317, 758
MaeII	ACGT	2 cut(s)	815, 855
MaeIII	GTNAC	3 cut(s)	545, 851, 941
MalI	GATC	2 cut(s)	126, 466
MbiI	CCGCTC	2 cut(s)	388, 396
MboI	GATC	2 cut(s)	124, 464
MboII	GAAGA	6 cut(s)	242, 349, 352, 388, 391, 403
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	5 cut(s)	295, 422, 505, 539, 707
MluCI	AATT	2 cut(s)	80, 494
Mly113I	GGCGCC	1 cut(s)	912
MlyI	GAGTC	6 cut(s)	59, 218, 569, 598, 615, 801
MmeI	TCCRAC	2 cut(s)	599, 836
MroNI	GCCGGC	1 cut(s)	583
MseI	TTAA	3 cut(s)	569, 972, 1006
MspA1I	CMGCKG	1 cut(s)	920
MspR9I	CCNGG	7 cut(s)	77, 264, 278, 507, 514, 594, 629
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	5 cut(s)	217, 457, 530, 732, 765
NaeI	GCCGGC	1 cut(s)	585
NarI	GGCGCC	1 cut(s)	912
NciI	CCSGG	6 cut(s)	77, 264, 507, 514, 594, 629
NdeII	GATC	2 cut(s)	124, 464
NgoMIV	GCCGGC	1 cut(s)	583
NlaIII	CATG	2 cut(s)	331, 862
NlaIV	GGNNCC	9 cut(s)	13, 98, 261, 268, 406, 504, 511, 652, 913
NmeAIII	GCCGAG	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	851
NsbI	TGCGCA	1 cut(s)	980
NspI	RCATGY	1 cut(s)	331
PaeR7I	CTCGAG	1 cut(s)	538
PagI	TCATGA	1 cut(s)	858
PauI	GCGCGC	1 cut(s)	528
PciI	ACATGT	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	386
PctI	GAATGC	1 cut(s)	697
PdiI	GCCGGC	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	18, 876
PflFI	GACNNNGTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	505
PleI	GAGTC	6 cut(s)	59, 218, 568, 597, 614, 800
PluTI	GGCGCC	1 cut(s)	915
PpsI	GAGTC	6 cut(s)	59, 218, 568, 597, 614, 800
PscI	ACATGT	1 cut(s)	327
Psp124BI	GAGCTC	2 cut(s)	295, 422
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	950
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	9 cut(s)	13, 98, 261, 268, 406, 504, 511, 652, 913
PspPI	GGNCC	3 cut(s)	266, 600, 640
PspXI	VCTCGAGB	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	464
PsyI	GACNNNGTC	1 cut(s)	158
PteI	GCGCGC	1 cut(s)	528
RsaI	GTAC	2 cut(s)	484, 827
RsaNI	GTAC	2 cut(s)	483, 826
SacI	GAGCTC	2 cut(s)	295, 422
SalI	GTCGAC	2 cut(s)	152, 283
SapI	GCTCTTC	1 cut(s)	386
SaqAI	TTAA	3 cut(s)	569, 972, 1006
Sau3AI	GATC	2 cut(s)	124, 464
Sau96I	GGNCC	3 cut(s)	266, 600, 640
SchI	GAGTC	6 cut(s)	59, 218, 569, 598, 615, 801
ScrFI	CCNGG	7 cut(s)	77, 264, 278, 507, 514, 594, 629
SduI	GDGCHC	5 cut(s)	295, 422, 505, 539, 707
SfaNI	GCATC	2 cut(s)	317, 758
SfcI	CTRYAG	2 cut(s)	28, 870
SfoI	GGCGCC	1 cut(s)	913
Sfr274I	CTCGAG	1 cut(s)	538
SgrDI	CGTCGACG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	640
SlaI	CTCGAG	1 cut(s)	538
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
Sse9I	AATT	2 cut(s)	80, 494
SspDI	GGCGCC	1 cut(s)	911
SstI	GAGCTC	2 cut(s)	295, 422
StyD4I	CCNGG	7 cut(s)	75, 262, 276, 505, 512, 592, 627
TaaI	ACNGT	3 cut(s)	32, 158, 908
TaiI	ACGT	2 cut(s)	818, 858
TaqI	TCGA	6 cut(s)	84, 153, 284, 311, 539, 551
TasI	AATT	2 cut(s)	80, 494
TauI	GCSGC	7 cut(s)	399, 410, 759, 768, 885, 917, 920
TfiI	GAWTC	2 cut(s)	18, 876
Tru1I	TTAA	3 cut(s)	569, 972, 1006
Tru9I	TTAA	3 cut(s)	569, 972, 1006
TseFI	GTSAC	1 cut(s)	851
TseI	GCWGC	3 cut(s)	624, 947, 981
Tsp45I	GTSAC	1 cut(s)	851
TspDTI	ATGAA	2 cut(s)	156, 875
Tth111I	GACNNNGTC	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	640
XapI	RAATTY	2 cut(s)	80, 494
XceI	RCATGY	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	538
XmiI	GTMKAC	2 cut(s)	153, 284
ZraI	GACGTC	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.