Rmu_sc0002451.1_g000040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002451.1
OG0006877
Physical Location & Seq
Forward (+)
171802 .. 173826
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002451.1_g000040.1.cds

Sequence Viewer

Length: 516 bp
atgttcaagaagaagagtgagagtagtgagaaagagaaggagaagaagaatgagcggaagaaggagaaccgttttcgcagagcagatctgccggaaatgcttgtacccgacccaaattcggggctccgggaggtgaaagcgccgtgttcaagaagcatcaatgtacctgatactcatactaatcagggtacgttggctgatcagcacacgagaagtgcaattgctattatactttgtcgccagggtcatcacaagacctttgaagctctagggacgtcgtcgtttaagctgagtgagtttcagtcgtcatcagagggatttagatcatccgagaagacagacttgaagaaggatctcttgctacctgggtcggcaaattcgaatcctttgctatctgggtacacaaattcagatcctttgctatctagggtggtgttttgggccccaaagatgagtcctttgctatcggggttcgatgaagaaggtgctgagtttgaagggtcttgtggtttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.04

Weight (kDa)

8.42

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 55
AciI CCGC 1 cut(s) 55
AclWI GGATC 2 cut(s) 360, 407
AcsI RAATTY 3 cut(s) 115, 376, 406
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 4 cut(s) 105, 165, 190, 401
AfiI CCNNNNNNNGG 2 cut(s) 118, 119
AgsI TTSAA 5 cut(s) 7, 150, 263, 346, 497
AjnI CCWGG 2 cut(s) 240, 364
AluBI AGCT 2 cut(s) 266, 289
AluI AGCT 2 cut(s) 266, 289
AlwI GGATC 2 cut(s) 360, 407
AoxI GGCC 1 cut(s) 441
ApaI GGGCCC 1 cut(s) 445
ApoI RAATTY 3 cut(s) 115, 376, 406
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 441, 442
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 445
BanII GRGCYC 2 cut(s) 126, 445
BauI CACGAG 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 127
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 2 cut(s) 242, 366
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 2 cut(s) 269, 426
BfoI RGCGCY 1 cut(s) 143
BglII AGATCT 1 cut(s) 85
Bme1390I CCNGG 3 cut(s) 128, 242, 366
BmgT120I GGNCC 2 cut(s) 441, 442
BmiI GGNNCC 3 cut(s) 125, 443, 444
BmrFI CCNGG 3 cut(s) 128, 242, 366
BmsI GCATC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 341
Bpu14I TTCGAA 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 322
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 241, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 119
Bse8I GATNNNNATC 1 cut(s) 322
BseBI CCWGG 2 cut(s) 242, 366
BseDI CCNNGG 2 cut(s) 241, 365
BseGI GGATG 1 cut(s) 326
BseJI GATNNNNATC 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 118, 119
BseMII CTCAG 2 cut(s) 281, 480
BseSI GKGCMC 1 cut(s) 445
BshFI GGCC 1 cut(s) 443
BsiSI CCGG 2 cut(s) 92, 127
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 118, 119
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 1 cut(s) 443
Bsp119I TTCGAA 1 cut(s) 380
Bsp120I GGGCCC 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 126, 445
Bsp143I GATC 5 cut(s) 85, 199, 323, 352, 412
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 2 cut(s) 282, 481
BspLI GGNNCC 3 cut(s) 125, 443, 444
BspPI GGATC 2 cut(s) 360, 407
BspT104I TTCGAA 1 cut(s) 380
BsrBI CCGCTC 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 241, 365
BssMI GATC 5 cut(s) 85, 199, 323, 352, 412
BssNI GRCGYC 1 cut(s) 275
BssSI CACGAG 1 cut(s) 208
Bst2BI CACGAG 1 cut(s) 208
Bst2UI CCWGG 2 cut(s) 242, 366
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 275
BstBI TTCGAA 1 cut(s) 380
BstDEI CTNAG 2 cut(s) 290, 489
BstF5I GGATG 1 cut(s) 326
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 5 cut(s) 88, 202, 326, 355, 415
BstMBI GATC 5 cut(s) 85, 199, 323, 352, 412
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 2 cut(s) 242, 366
BstSCI CCNGG 3 cut(s) 126, 240, 364
BstSLI GKGCMC 1 cut(s) 445
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 3 cut(s) 85, 352, 412
BstYI RGATCY 3 cut(s) 85, 352, 412
BsuRI GGCC 1 cut(s) 443
BtsCI GGATG 1 cut(s) 326
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 441, 442
Csp6I GTAC 4 cut(s) 104, 164, 189, 400
CviJI RGCY 5 cut(s) 124, 197, 266, 289, 443
CviKI_1 RGCY 5 cut(s) 124, 197, 266, 289, 443
CviQI GTAC 4 cut(s) 104, 164, 189, 400
DdeI CTNAG 2 cut(s) 290, 489
DpnI GATC 5 cut(s) 87, 201, 325, 354, 414
DpnII GATC 5 cut(s) 85, 199, 323, 352, 412
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco24I GRGCYC 2 cut(s) 126, 445
EcoO109I RGGNCCY 1 cut(s) 442
EcoRII CCWGG 2 cut(s) 240, 364
EcoT38I GRGCYC 2 cut(s) 126, 445
FaiI YATR 2 cut(s) 177, 230
FalI AAGNNNNNCTT 4 cut(s) 326, 358, 341, 373
FaqI GGGAC 1 cut(s) 286
FbaI TGATCA 1 cut(s) 199
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 2 cut(s) 126, 445
FspBI CTAG 2 cut(s) 269, 426
GlaI GCGC 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 1 cut(s) 443
HapII CCGG 2 cut(s) 92, 127
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 275
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 2 cut(s) 382, 454
HpaII CCGG 2 cut(s) 92, 127
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 4 cut(s) 313, 331, 412, 515
Hpy188III TCNNGA 2 cut(s) 7, 150
Hpy8I GTNNAC 1 cut(s) 402
Hpy99I CGWCG 2 cut(s) 280, 283
HpyAV CCTTC 5 cut(s) 31, 55, 343, 476, 491
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 2 cut(s) 191, 275
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 2 cut(s) 290, 489
HpySE526I ACGT 2 cut(s) 191, 275
Hsp92I GRCGYC 1 cut(s) 275
HspAI GCGC 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 5 cut(s) 85, 199, 323, 352, 412
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 9 cut(s) 105, 140, 170, 180, 227, 254, 351, 378, 381
LweI GCATC 1 cut(s) 165
MaeI CTAG 2 cut(s) 269, 426
MaeII ACGT 2 cut(s) 191, 275
MalI GATC 5 cut(s) 87, 201, 325, 354, 414
MbiI CCGCTC 1 cut(s) 55
MboI GATC 5 cut(s) 85, 199, 323, 352, 412
MboII GAAGA 8 cut(s) 22, 25, 55, 58, 70, 346, 358, 491
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 3 cut(s) 85, 352, 412
MhlI GDGCHC 2 cut(s) 126, 445
MluCI AATT 4 cut(s) 115, 219, 376, 406
MlyI GAGTC 1 cut(s) 463
MnlI CCTC 2 cut(s) 124, 307
MseI TTAA 1 cut(s) 285
MspI CCGG 2 cut(s) 92, 127
MspR9I CCNGG 3 cut(s) 128, 242, 366
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 2 cut(s) 242, 366
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 128
NdeII GATC 5 cut(s) 85, 199, 323, 352, 412
NlaIV GGNNCC 3 cut(s) 125, 443, 444
NspV TTCGAA 1 cut(s) 380
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PfeI GAWTC 1 cut(s) 382
PflFI GACNNNGTC 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 126
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 240, 364
PspGI CCWGG 2 cut(s) 240, 364
PspN4I GGNNCC 3 cut(s) 125, 443, 444
PspOMI GGGCCC 1 cut(s) 441
PspPI GGNCC 2 cut(s) 441, 442
PsuI RGATCY 3 cut(s) 85, 352, 412
PsyI GACNNNGTC 1 cut(s) 277
RsaI GTAC 4 cut(s) 105, 165, 190, 401
RsaNI GTAC 4 cut(s) 104, 164, 189, 400
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 5 cut(s) 85, 199, 323, 352, 412
Sau96I GGNCC 2 cut(s) 441, 442
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 3 cut(s) 128, 242, 366
SduI GDGCHC 2 cut(s) 126, 445
SetI ASST 9 cut(s) 135, 169, 194, 260, 268, 278, 291, 367, 487
SfaNI GCATC 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 380
Sse9I AATT 4 cut(s) 115, 219, 376, 406
SsiI CCGC 1 cut(s) 55
SspMI CTAG 2 cut(s) 269, 426
StyD4I CCNGG 3 cut(s) 126, 240, 364
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 2 cut(s) 194, 278
TaqI TCGA 2 cut(s) 380, 474
TasI AATT 4 cut(s) 115, 219, 376, 406
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 492
Tth111I GACNNNGTC 1 cut(s) 277
XapI RAATTY 3 cut(s) 115, 376, 406
XspI CTAG 2 cut(s) 269, 426
ZraI GACGTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.