Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Reverse (-)

1549701 .. 1552477

Gene Structure 2777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTGCTGCTTCTTCGCCGCCGCAGAATTGGGTCTTCGATTATGATCTGATTGAGAGCATCTCCGTTCCTGGCGGTGACTTGCCTTCTCTTGACCCGCCCGGTTTCTCTTGGGGCTCCGATTCGTTTGCCGCTCCGACCGCCCCAAGCGTGGACTTTGATGGCTCATTCGGAAATTCCGAGATTATGAAGGAAACTGGGTCAAACAAACGTGTGAGGTCCGGGTCATGCAATGTGTCTAGTTCTAAAGCCTGTAGAGAGAAAATGCGGAGGGACAGACTGAATGACAAGTTTCTGGAATTGAGTACTATCCTTGAACCTGGAAGGCCACCTAAAACTGACAAAGCTGCTATATTGGTTGATGCTGTTCGAATGGTGAATCAGTTACGTGGGGAAGCCCAAAATCTGAAGGACTCAAGTGAGAGTCTGCAGGAGAAGATAACTGAATTGAAGGCTGAGAAGAACGAACTTCGTGATGAGAAGCAGAGGCTAAAAGCAGAGAAAGAGAACCTTGAGCGGCAAATTAAAGCCTTGGGTACACAACCGGGCTTCTTGCCCCACCCTGCTGCAATTCCAGCTCCATTTTCTGCCCCTGGCCAAGTTGTTGGTGGCAAACTGATGCCGTTCATGGGGTATCCCGGAGTGTCTGGATACCCTGGAGTTTCCATGTGGCAGTTCATGCCACAGGCTGCAGTTGATACCTCACAAGATCATGTTCTTCGTCCCCCAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

246

Amino Acids

26.61

Weight (kDa)

5.83

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	82 - 130	1.8e-10	Helix-loop-helix DNA-binding domain
bHLH_IRO3	PF23177	83 - 146	3.4e-07	Iron-related transcription factor 3 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	134, 517
AciI	CCGC	8 cut(s)	20, 23, 75, 98, 132, 141, 268, 517
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	307, 538
AfiI	CCNNNNNNNGG	2 cut(s)	151, 629
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	317, 451
AjnI	CCWGG	4 cut(s)	70, 319, 592, 655
AluBI	AGCT	2 cut(s)	347, 578
AluI	AGCT	2 cut(s)	347, 578
AoxI	GGCC	2 cut(s)	326, 595
ApeKI	GCWGC	5 cut(s)	5, 8, 347, 566, 689
ApoI	RAATTY	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	4 cut(s)	102, 223, 546, 639
AsuHPI	GGTGA	2 cut(s)	89, 388
AsuII	TTCGAA	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	219
BalI	TGGCCA	1 cut(s)	597
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	28
BbvI	GCAGC	3 cut(s)	334, 553, 676
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	607
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	4 cut(s)	72, 321, 594, 657
BciVI	GTATCC	2 cut(s)	644, 645
BcnI	CCSGG	4 cut(s)	102, 223, 546, 639
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	3 cut(s)	253, 428, 690
BfuI	GTATCC	2 cut(s)	644, 645
BisI	GCNGC	9 cut(s)	6, 9, 20, 23, 132, 348, 518, 567, 690
BlsI	GCNGC	9 cut(s)	7, 10, 21, 24, 133, 349, 519, 568, 691
BmcAI	AGTACT	1 cut(s)	307
Bme1390I	CCNGG	8 cut(s)	72, 102, 223, 321, 546, 594, 639, 657
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	8 cut(s)	72, 102, 223, 321, 546, 594, 639, 657
BmrI	ACTGGG	2 cut(s)	207, 722
BmsI	GCATC	3 cut(s)	69, 352, 609
BmuI	ACTGGG	2 cut(s)	207, 722
BpiI	GAAGAC	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	370
BpuEI	CTTGAG	2 cut(s)	400, 533
BpuMI	CCSGG	4 cut(s)	102, 223, 546, 639
BsaAI	YACGTR	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	531, 592, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 629
Bse1I	ACTGG	2 cut(s)	202, 728
Bse3DI	GCAATG	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	4 cut(s)	72, 321, 594, 657
BseDI	CCNNGG	3 cut(s)	531, 592, 655
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	151, 629
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	202, 728
BseXI	GCAGC	3 cut(s)	334, 553, 676
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	328, 597
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	4 cut(s)	102, 222, 545, 639
BslFI	GGGAC	2 cut(s)	287, 708
BslI	CCNNNNNNNGG	2 cut(s)	151, 629
BsmFI	GGGAC	2 cut(s)	287, 708
BsnI	GGCC	2 cut(s)	328, 597
Bsp119I	TTCGAA	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	46, 709
BspACI	CCGC	8 cut(s)	20, 23, 75, 98, 132, 141, 268, 517
BspANI	GGCC	2 cut(s)	328, 597
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	2 cut(s)	432, 694
BspT104I	TTCGAA	1 cut(s)	370
BsrBI	CCGCTC	2 cut(s)	134, 517
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	202, 728
BssECI	CCNNGG	3 cut(s)	531, 592, 655
BssMI	GATC	2 cut(s)	46, 709
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	4 cut(s)	72, 321, 594, 657
BstAPI	GCANNNNNTGC	1 cut(s)	679
BstBAI	YACGTR	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	456
BstKTI	GATC	2 cut(s)	49, 712
BstMBI	GATC	2 cut(s)	46, 709
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 575, 679
BstNI	CCWGG	4 cut(s)	72, 321, 594, 657
BstSCI	CCNGG	8 cut(s)	70, 100, 221, 319, 544, 592, 637, 655
BstSFI	CTRYAG	3 cut(s)	253, 428, 690
BstV1I	GCAGC	3 cut(s)	334, 553, 676
BstV2I	GAAGAC	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	605
BsuI	GTATCC	2 cut(s)	644, 645
BsuRI	GGCC	2 cut(s)	328, 597
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	306, 537
CviAII	CATG	5 cut(s)	228, 628, 667, 679, 713
CviQI	GTAC	2 cut(s)	306, 537
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	2 cut(s)	48, 711
DpnII	GATC	2 cut(s)	46, 709
EaeI	YGGCCR	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	428
EcoRII	CCWGG	4 cut(s)	70, 319, 592, 655
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	5 cut(s)	231, 631, 670, 682, 716
FaiI	YATR	8 cut(s)	45, 188, 229, 353, 629, 668, 680, 714
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FaqI	GGGAC	2 cut(s)	287, 708
FatI	CATG	5 cut(s)	227, 627, 666, 678, 712
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	9 cut(s)	6, 9, 20, 23, 132, 348, 518, 567, 690
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	9 cut(s)	6, 9, 20, 23, 132, 348, 518, 567, 690
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	9 cut(s)	6, 9, 20, 23, 132, 348, 518, 567, 690
GsuI	CTGGAG	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	328, 597
HapII	CCGG	4 cut(s)	102, 222, 545, 639
Hin1II	CATG	5 cut(s)	231, 631, 670, 682, 716
HinfI	GANTC	4 cut(s)	122, 379, 413, 424
HpaII	CCGG	4 cut(s)	102, 222, 545, 639
HphI	GGTGA	2 cut(s)	89, 388
Hpy166II	GTNNAC	2 cut(s)	154, 539
Hpy188I	TCNGA	6 cut(s)	51, 121, 138, 173, 181, 408
Hpy188III	TCNNGA	4 cut(s)	92, 296, 473, 648
Hpy8I	GTNNAC	2 cut(s)	154, 539
HpyAV	CCTTC	5 cut(s)	96, 184, 318, 403, 445
HpyCH4IV	ACGT	2 cut(s)	211, 388
HpyCH4V	TGCA	4 cut(s)	231, 430, 569, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 575, 679
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	2 cut(s)	211, 388
Hsp92II	CATG	5 cut(s)	231, 631, 670, 682, 716
Kzo9I	GATC	2 cut(s)	46, 709
LmnI	GCTCC	3 cut(s)	122, 139, 583
Lsp1109I	GCAGC	3 cut(s)	334, 553, 676
LweI	GCATC	3 cut(s)	69, 352, 609
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	211, 388
MaeIII	GTNAC	2 cut(s)	77, 384
MalI	GATC	2 cut(s)	48, 711
MbiI	CCGCTC	2 cut(s)	134, 517
MboI	GATC	2 cut(s)	46, 709
MboII	GAAGA	5 cut(s)	6, 28, 448, 472, 710
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	597
MluCI	AATT	6 cut(s)	28, 175, 299, 446, 522, 570
MluNI	TGGCCA	1 cut(s)	597
MlyI	GAGTC	2 cut(s)	407, 433
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	4 cut(s)	210, 264, 480, 712
Mox20I	TGGCCA	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	597
MseI	TTAA	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	597
MspI	CCGG	4 cut(s)	102, 222, 545, 639
MspR9I	CCNGG	8 cut(s)	72, 102, 223, 321, 546, 594, 639, 657
MvaI	CCWGG	4 cut(s)	72, 321, 594, 657
MwoI	GCNNNNNNNGC	3 cut(s)	140, 575, 679
NciI	CCSGG	4 cut(s)	102, 223, 546, 639
NdeII	GATC	2 cut(s)	46, 709
NlaIII	CATG	5 cut(s)	231, 631, 670, 682, 716
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	122, 379
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	9 cut(s)	7, 10, 21, 24, 133, 349, 519, 568, 691
PleI	GAGTC	2 cut(s)	407, 432
PpsI	GAGTC	2 cut(s)	407, 432
Ppu21I	YACGTR	1 cut(s)	389
Psp6I	CCWGG	4 cut(s)	70, 319, 592, 655
PspGI	CCWGG	4 cut(s)	70, 319, 592, 655
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	219
PstI	CTGCAG	2 cut(s)	432, 694
RsaI	GTAC	2 cut(s)	307, 538
RsaNI	GTAC	2 cut(s)	306, 537
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	9 cut(s)	6, 9, 20, 23, 132, 348, 518, 567, 690
Sau3AI	GATC	2 cut(s)	46, 709
Sau96I	GGNCC	1 cut(s)	219
ScaI	AGTACT	1 cut(s)	307
SchI	GAGTC	2 cut(s)	407, 433
ScrFI	CCNGG	8 cut(s)	72, 102, 223, 321, 546, 594, 639, 657
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	9 cut(s)	214, 221, 322, 334, 349, 391, 513, 580, 704
SfaNI	GCATC	3 cut(s)	69, 352, 609
SfcI	CTRYAG	3 cut(s)	253, 428, 690
SfuI	TTCGAA	1 cut(s)	370
SinI	GGWCC	1 cut(s)	219
SmlI	CTYRAG	2 cut(s)	415, 512
SmoI	CTYRAG	2 cut(s)	415, 512
Sse9I	AATT	6 cut(s)	28, 175, 299, 446, 522, 570
SsiI	CCGC	8 cut(s)	20, 23, 75, 98, 132, 141, 268, 517
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	8 cut(s)	70, 100, 221, 319, 544, 592, 637, 655
StyI	CCWWGG	1 cut(s)	531
TaiI	ACGT	2 cut(s)	214, 391
TaqI	TCGA	2 cut(s)	39, 370
TasI	AATT	6 cut(s)	28, 175, 299, 446, 522, 570
TatI	WGTACW	1 cut(s)	305
TauI	GCSGC	4 cut(s)	22, 25, 134, 520
TfiI	GAWTC	2 cut(s)	122, 379
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	5 cut(s)	5, 8, 347, 566, 689
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	203, 616, 667
TspGWI	ACGGA	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XspI	CTAG	1 cut(s)	240
ZrmI	AGTACT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.