Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Reverse (-)

22581492 .. 22584236

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g20040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGACGAAGGCGAAACACACCCAGCACACAACCCACTCCACCTGTGCTGTGCCATCAATCCCCACATCATCATCATCAGCACACAGATTCTTCTCCGCCCCCGGTTTTCGTTTCGAGGGTAGACTAGTCCACAGCCGGAAAACCAACATTTTTTTTTTCCGGCAGCCTCCAAAGATGGTCTCCCCGGAAAACACCAACTGGCTCTTCGATTATGGGCTCATTGACGATACTCCTGTCCTGGGAGGGAACTTCGCTTGGCCAGTTCAGCCCATCGCCGGTTCGTCCAGTGTCAGTGTTGAACTTGATGGGTCATTGGGGGATGCAGAGGGACTTAAGGAATCTGGCTCAAAAAAGAGGGTCAGAACTGAATCATGCAGTGGAACAAGCTCCAAGGCATGCAGGGAGAAGTTGCGAAGGGATAGGCTAAATGACAAGTTTGTGGAATTGGGCTCTATTTTGGAGCCTGGAAGGCCCCCCAAGACGGACAAGGCTGCTATTTTGGTTGATGCTGTACGAATGGTGAATCAATTACGTGGTGAAGCCCAAAAGTTGAAGGACACAAATTCAGGCCTCCAGGAGAAGATCAAGGAATTGAAGGCAGAGAAGAATGAACTTCGCGATGAGAAACTGAGGCTGAAATTGGAGAAAGAGAAGTTGGAACAGCAACTTAAATCCATGAATGTCCAGCCCGGCTTTTTACCTCCCCCTCCTGCAATTCCTGCTGCATTTACTGCTCAAGGCCAAGCTCGCGGAAACAAGATGGTGCCTTTCATTGGCTACCCTGGGGTTGCCATGTGGCAGTTCATGCCACCTGCCGCGGTGGATACTTCTCAGGATCATGTACTCCGCCCACCGGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

288

Amino Acids

31.69

Weight (kDa)

9.61

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	820
Acc36I	ACCTGC	1 cut(s)	820
AccB1I	GGYRCC	1 cut(s)	763
AccI	GTMKAC	1 cut(s)	121
AccII	CGCG	3 cut(s)	618, 750, 818
AciI	CCGC	5 cut(s)	96, 750, 816, 818, 847
AclWI	GGATC	1 cut(s)	843
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	562
AfaI	GTAC	2 cut(s)	513, 843
AfiI	CCNNNNNNNGG	5 cut(s)	239, 275, 481, 773, 853
AflII	CTTAAG	1 cut(s)	332
AgeI	ACCGGT	1 cut(s)	853
AgsI	TTSAA	3 cut(s)	299, 553, 595
AhlI	ACTAGT	1 cut(s)	124
AjnI	CCWGG	4 cut(s)	237, 463, 573, 781
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 220, 638, 670
AluBI	AGCT	2 cut(s)	387, 746
AluI	AGCT	2 cut(s)	387, 746
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	843
AoxI	GGCC	4 cut(s)	257, 470, 568, 739
ApeKI	GCWGC	3 cut(s)	163, 491, 722
ApoI	RAATTY	1 cut(s)	562
AsiGI	ACCGGT	1 cut(s)	853
AspS9I	GGNCC	1 cut(s)	471
AsuC2I	CCSGG	3 cut(s)	102, 185, 690
AsuHPI	GGTGA	2 cut(s)	532, 548
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BalI	TGGCCA	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	763
BanII	GRGCYC	2 cut(s)	219, 452
BbvI	GCAGC	3 cut(s)	175, 478, 709
BccI	CCATC	5 cut(s)	61, 169, 278, 299, 754
BciT130I	CCWGG	4 cut(s)	239, 465, 575, 783
BciVI	GTATCC	1 cut(s)	817
BcnI	CCSGG	3 cut(s)	102, 185, 690
BcoDI	GTCTC	1 cut(s)	184
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	817
BglI	GCCNNNNNGGC	1 cut(s)	469
BisI	GCNGC	4 cut(s)	164, 492, 723, 816
BlsI	GCNGC	4 cut(s)	165, 493, 724, 817
Bme1390I	CCNGG	7 cut(s)	102, 185, 239, 465, 575, 690, 783
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	3 cut(s)	462, 473, 765
BmrFI	CCNGG	7 cut(s)	102, 185, 239, 465, 575, 690, 783
BmsI	GCATC	2 cut(s)	310, 496
BpmI	CTGGAG	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	720
BpuMI	CCSGG	3 cut(s)	102, 185, 690
BsaAI	YACGTR	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	7 cut(s)	100, 183, 238, 390, 781, 782, 816
BsaWI	WCCGGW	1 cut(s)	853
Bsc4I	CCNNNNNNNGG	5 cut(s)	239, 275, 481, 773, 853
Bse118I	RCCGGY	2 cut(s)	275, 853
Bse1I	ACTGG	3 cut(s)	203, 260, 285
BseBI	CCWGG	4 cut(s)	239, 465, 575, 783
BseDI	CCNNGG	7 cut(s)	100, 183, 238, 390, 781, 782, 816
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	5 cut(s)	239, 275, 481, 773, 853
BseMII	CTCAG	2 cut(s)	620, 845
BseNI	ACTGG	3 cut(s)	203, 260, 285
BseXI	GCAGC	3 cut(s)	175, 478, 709
BseYI	CCCAGC	1 cut(s)	21
Bsh1236I	CGCG	3 cut(s)	618, 750, 818
BshFI	GGCC	4 cut(s)	259, 472, 570, 741
BshNI	GGYRCC	1 cut(s)	763
BshTI	ACCGGT	1 cut(s)	853
BsiSI	CCGG	7 cut(s)	102, 136, 160, 185, 276, 690, 854
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	5 cut(s)	239, 275, 481, 773, 853
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	4 cut(s)	259, 472, 570, 741
Bso31I	GGTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	219, 452
Bsp143I	GATC	2 cut(s)	582, 835
Bsp68I	TCGCGA	1 cut(s)	618
BspACI	CCGC	5 cut(s)	96, 750, 816, 818, 847
BspANI	GGCC	4 cut(s)	259, 472, 570, 741
BspCNI	CTCAG	2 cut(s)	621, 844
BspFNI	CGCG	3 cut(s)	618, 750, 818
BspLI	GGNNCC	3 cut(s)	462, 473, 765
BspMI	ACCTGC	1 cut(s)	820
BspPI	GGATC	1 cut(s)	843
BspQI	GCTCTTC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	763
BspTI	CTTAAG	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	184
BsrFI	RCCGGY	2 cut(s)	275, 853
BsrI	ACTGG	3 cut(s)	203, 260, 285
BssAI	RCCGGY	2 cut(s)	275, 853
BssECI	CCNNGG	7 cut(s)	100, 183, 238, 390, 781, 782, 816
BssMI	GATC	2 cut(s)	582, 835
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	4 cut(s)	239, 465, 575, 783
Bst6I	CTCTTC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	332
BstAPI	GCANNNNNTGC	3 cut(s)	719, 731, 805
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	397, 748
BstDEI	CTNAG	2 cut(s)	629, 831
BstDSI	CCRYGG	1 cut(s)	816
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	3 cut(s)	618, 750, 818
BstKTI	GATC	2 cut(s)	585, 838
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	582, 835
BstMWI	GCNNNNNNNGC	6 cut(s)	265, 469, 719, 731, 747, 805
BstNI	CCWGG	4 cut(s)	239, 465, 575, 783
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	7 cut(s)	100, 183, 237, 463, 573, 688, 781
BstUI	CGCG	3 cut(s)	618, 750, 818
BstV1I	GCAGC	3 cut(s)	175, 478, 709
BsuI	GTATCC	1 cut(s)	817
BsuRI	GGCC	4 cut(s)	259, 472, 570, 741
BtgI	CCRYGG	1 cut(s)	816
BtgZI	GCGATG	2 cut(s)	256, 633
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	3 cut(s)	292, 298, 382
BtuMI	TCGCGA	1 cut(s)	618
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	2 cut(s)	397, 748
Cfr10I	RCCGGY	2 cut(s)	275, 853
Cfr13I	GGNCC	1 cut(s)	471
Cfr42I	CCGCGG	1 cut(s)	819
Csp6I	GTAC	2 cut(s)	512, 842
CspAI	ACCGGT	1 cut(s)	853
CviAII	CATG	6 cut(s)	372, 396, 676, 793, 805, 839
CviQI	GTAC	2 cut(s)	512, 842
DdeI	CTNAG	2 cut(s)	629, 831
DpnI	GATC	2 cut(s)	584, 837
DpnII	GATC	2 cut(s)	582, 835
EaeI	YGGCCR	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	2 cut(s)	85, 836
Eco130I	CCWWGG	1 cut(s)	390
Eco147I	AGGCCT	1 cut(s)	570
Eco24I	GRGCYC	2 cut(s)	219, 452
Eco31I	GGTCTC	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	471
EcoRII	CCWGG	4 cut(s)	237, 463, 573, 781
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	2 cut(s)	219, 452
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	6 cut(s)	375, 399, 679, 796, 808, 842
FaiI	YATR	7 cut(s)	213, 373, 397, 677, 794, 806, 840
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	6 cut(s)	371, 395, 675, 792, 804, 838
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	4 cut(s)	164, 492, 723, 816
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	2 cut(s)	219, 452
Fsp4HI	GCNGC	4 cut(s)	164, 492, 723, 816
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	4 cut(s)	164, 492, 723, 816
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	4 cut(s)	259, 472, 570, 741
HapII	CCGG	7 cut(s)	102, 136, 160, 185, 276, 690, 854
Hin1II	CATG	6 cut(s)	375, 399, 679, 796, 808, 842
HinfI	GANTC	4 cut(s)	87, 338, 368, 523
HpaII	CCGG	7 cut(s)	102, 136, 160, 185, 276, 690, 854
HphI	GGTGA	2 cut(s)	532, 548
Hpy166II	GTNNAC	2 cut(s)	122, 130
Hpy188I	TCNGA	1 cut(s)	362
Hpy188III	TCNNGA	2 cut(s)	617, 833
Hpy8I	GTNNAC	2 cut(s)	122, 130
HpyAV	CCTTC	4 cut(s)	408, 462, 547, 589
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	5 cut(s)	323, 375, 399, 713, 725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	265, 469, 719, 731, 747, 805
HpyF3I	CTNAG	2 cut(s)	629, 831
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	6 cut(s)	375, 399, 679, 796, 808, 842
KspI	CCGCGG	1 cut(s)	819
Kzo9I	GATC	2 cut(s)	582, 835
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	392, 460
Lsp1109I	GCAGC	3 cut(s)	175, 478, 709
LweI	GCATC	2 cut(s)	310, 496
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	532
MalI	GATC	2 cut(s)	584, 837
MboI	GATC	2 cut(s)	582, 835
MboII	GAAGA	4 cut(s)	82, 196, 592, 616
MhlI	GDGCHC	2 cut(s)	219, 452
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	6 cut(s)	443, 527, 562, 590, 638, 714
MluNI	TGGCCA	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	636
MnlI	CCTC	9 cut(s)	109, 177, 236, 319, 348, 581, 624, 711, 717
Mox20I	TGGCCA	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	259
MseI	TTAA	3 cut(s)	333, 669, 862
Msp20I	TGGCCA	1 cut(s)	259
MspA1I	CMGCKG	1 cut(s)	818
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	7 cut(s)	102, 136, 160, 185, 276, 690, 854
MspR9I	CCNGG	7 cut(s)	102, 185, 239, 465, 575, 690, 783
MvaI	CCWGG	4 cut(s)	239, 465, 575, 783
MvnI	CGCG	3 cut(s)	618, 750, 818
MwoI	GCNNNNNNNGC	6 cut(s)	265, 469, 719, 731, 747, 805
NciI	CCSGG	3 cut(s)	102, 185, 690
NdeII	GATC	2 cut(s)	582, 835
NlaIII	CATG	6 cut(s)	375, 399, 679, 796, 808, 842
NlaIV	GGNNCC	3 cut(s)	462, 473, 765
NruI	TCGCGA	1 cut(s)	618
NspI	RCATGY	1 cut(s)	399
PaeI	GCATGC	1 cut(s)	399
PaqCI	CACCTGC	1 cut(s)	820
PasI	CCCWGGG	1 cut(s)	782
PceI	AGGCCT	1 cut(s)	570
PciSI	GCTCTTC	1 cut(s)	209
PfeI	GAWTC	4 cut(s)	87, 338, 368, 523
PfoI	TCCNGGA	1 cut(s)	573
PinAI	ACCGGT	1 cut(s)	853
PkrI	GCNGC	4 cut(s)	165, 493, 724, 817
Ppu21I	YACGTR	1 cut(s)	533
Psp6I	CCWGG	4 cut(s)	237, 463, 573, 781
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	4 cut(s)	237, 463, 573, 781
PspN4I	GGNNCC	3 cut(s)	462, 473, 765
PspPI	GGNCC	1 cut(s)	471
RruI	TCGCGA	1 cut(s)	618
RsaI	GTAC	2 cut(s)	513, 843
RsaNI	GTAC	2 cut(s)	512, 842
SacII	CCGCGG	1 cut(s)	819
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	3 cut(s)	333, 669, 862
SatI	GCNGC	4 cut(s)	164, 492, 723, 816
Sau3AI	GATC	2 cut(s)	582, 835
Sau96I	GGNCC	1 cut(s)	471
ScrFI	CCNGG	7 cut(s)	102, 185, 239, 465, 575, 690, 783
SduI	GDGCHC	2 cut(s)	219, 452
SetI	ASST	6 cut(s)	44, 389, 535, 703, 748, 814
SfaNI	GCATC	2 cut(s)	310, 496
Sfr303I	CCGCGG	1 cut(s)	819
SgrBI	CCGCGG	1 cut(s)	819
SmlI	CTYRAG	2 cut(s)	332, 735
SmoI	CTYRAG	2 cut(s)	332, 735
SpeI	ACTAGT	1 cut(s)	124
SphI	GCATGC	1 cut(s)	399
Sse9I	AATT	6 cut(s)	443, 527, 562, 590, 638, 714
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	5 cut(s)	96, 750, 816, 818, 847
SspMI	CTAG	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	7 cut(s)	100, 183, 237, 463, 573, 688, 781
StyI	CCWWGG	1 cut(s)	390
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	2 cut(s)	114, 207
TasI	AATT	6 cut(s)	443, 527, 562, 590, 638, 714
TatI	WGTACW	1 cut(s)	841
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	4 cut(s)	87, 338, 368, 523
Tru1I	TTAA	3 cut(s)	333, 669, 862
Tru9I	TTAA	3 cut(s)	333, 669, 862
TscAI	CASTG	3 cut(s)	292, 298, 382
TseI	GCWGC	3 cut(s)	163, 491, 722
TspDTI	ATGAA	4 cut(s)	624, 692, 760, 793
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	3 cut(s)	292, 298, 382
Vha464I	CTTAAG	1 cut(s)	332
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	1 cut(s)	399
XmiI	GTMKAC	1 cut(s)	121
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.