Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Forward (+)

14778705 .. 14782480

Gene Structure 3776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTCTCCCCGGAAAACACCAACTGGCTCTACGATTACGGCCTCATCGACGACGCCAACTTCCCCGTCTCCTCCTCCGCCTTCAACTGGCCCGTCCAGCCCCTCCCCGGCTCCTCTTCCGTCAGTGTTGAACTTGATGGCTCATTGGGGGATGTAGAGGGACTCAAAGAATCTGGCTCAAAAAAGAGGGTTAGATGTGAATCATCCAGTGCAACTAGCTCCAAGGCATGTAGGGAGAAGTTGCGTAGGGATAGGCTGAACGACAAGTTTCTGGAATTGGGCTCTATATTGGAGCCTGGAAGGCCACCCAAGACGGATAAGGCTGCTATTTTGATTGATGCTGTCCGAATGGTGAATCAGTTACGTGGTGAAGCCCAGAAGTTGAAGGACTCAAATTCAAGTCTCCAGGAGAAGATTAAGGAATTGAAGACAGAGAAGACTGAACTTCGTGATGAGAAGCAGAGGCTGAAGTCAGAGAAAGAGAAGCTGGAGCAGCAACTGAAGGCGATGACTGCACAGCCGAGCTTCATGCCGGCCCCTCCTGCAATTCCGGCTGCATTTGCTGCTCAAGGCCAAGCCCACGGAAACAAGATGGTGCCTTTCATTGGTTACCCTGGGGTCGCAATGTGGCAGTTCATGCCACCTGCCGCTGTGGATACATCCCAGGATCATGTACTCCGCCCACCAGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

232

Amino Acids

25.42

Weight (kDa)

8.44

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	74 - 139	4.2e-10	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	74 - 122	1.3e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
Acc36I	ACCTGC	1 cut(s)	652
AccB1I	GGYRCC	1 cut(s)	595
AciI	CCGC	3 cut(s)	78, 648, 679
AclWI	GGATC	1 cut(s)	675
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	2 cut(s)	488, 521
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	675
AfiI	CCNNNNNNNGG	3 cut(s)	87, 107, 605
AgsI	TTSAA	5 cut(s)	85, 131, 385, 399, 427
AjnI	CCWGG	4 cut(s)	295, 405, 613, 663
AluBI	AGCT	3 cut(s)	219, 487, 525
AluI	AGCT	3 cut(s)	219, 487, 525
Alw26I	GTCTC	3 cut(s)	10, 73, 407
AlwI	GGATC	1 cut(s)	675
AlwNI	CAGNNNCTG	2 cut(s)	466, 499
AoxI	GGCC	5 cut(s)	40, 89, 302, 534, 571
ApeKI	GCWGC	4 cut(s)	323, 493, 554, 563
ApoI	RAATTY	1 cut(s)	394
AspS9I	GGNCC	2 cut(s)	90, 535
AsuC2I	CCSGG	2 cut(s)	11, 108
AsuHPI	GGTGA	2 cut(s)	364, 380
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	2 cut(s)	434, 443
BbvI	GCAGC	4 cut(s)	310, 505, 541, 550
BccI	CCATC	2 cut(s)	131, 586
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BciT130I	CCWGG	4 cut(s)	297, 407, 615, 665
BciVI	GTATCC	1 cut(s)	649
BcnI	CCSGG	2 cut(s)	11, 108
BcoDI	GTCTC	3 cut(s)	10, 73, 407
BfaI	CTAG	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	652
BfuI	GTATCC	1 cut(s)	649
BglI	GCCNNNNNGGC	1 cut(s)	301
BisI	GCNGC	5 cut(s)	324, 494, 555, 564, 648
BlsI	GCNGC	5 cut(s)	325, 495, 556, 565, 649
Bme1390I	CCNGG	6 cut(s)	11, 108, 297, 407, 615, 665
BmgT120I	GGNCC	2 cut(s)	90, 535
BmiI	GGNNCC	4 cut(s)	112, 294, 537, 597
BmrFI	CCNGG	6 cut(s)	11, 108, 297, 407, 615, 665
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	2 cut(s)	434, 443
BpmI	CTGGAG	2 cut(s)	389, 509
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	2 cut(s)	11, 108
BsaAI	YACGTR	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	7 cut(s)	9, 106, 222, 580, 613, 614, 663
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 107, 605
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	4 cut(s)	29, 92, 207, 686
Bse3DI	GCAATG	1 cut(s)	630
Bse8I	GATNNNNATC	1 cut(s)	199
BseBI	CCWGG	4 cut(s)	297, 407, 615, 665
BseDI	CCNNGG	7 cut(s)	9, 106, 222, 580, 613, 614, 663
BseGI	GGATG	3 cut(s)	157, 203, 659
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	3 cut(s)	87, 107, 605
BseMI	GCAATG	1 cut(s)	630
BseNI	ACTGG	4 cut(s)	29, 92, 207, 686
BseRI	GAGGAG	3 cut(s)	61, 64, 103
BseXI	GCAGC	4 cut(s)	310, 505, 541, 550
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	5 cut(s)	42, 91, 304, 536, 573
BshNI	GGYRCC	1 cut(s)	595
BsiSI	CCGG	4 cut(s)	11, 108, 533, 551
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	3 cut(s)	87, 107, 605
BsmAI	GTCTC	3 cut(s)	10, 73, 407
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	5 cut(s)	42, 91, 304, 536, 573
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	667
BspACI	CCGC	3 cut(s)	78, 648, 679
BspANI	GGCC	5 cut(s)	42, 91, 304, 536, 573
BspLI	GGNNCC	4 cut(s)	112, 294, 537, 597
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	1 cut(s)	675
BspT107I	GGYRCC	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	532
BsrI	ACTGG	4 cut(s)	29, 92, 207, 686
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	7 cut(s)	9, 106, 222, 580, 613, 614, 663
BssMI	GATC	1 cut(s)	667
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	4 cut(s)	297, 407, 615, 665
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	2 cut(s)	563, 637
BstBAI	YACGTR	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	534
BstDSI	CCRYGG	1 cut(s)	580
BstEII	GGTNACC	1 cut(s)	608
BstF5I	GGATG	3 cut(s)	157, 203, 659
BstKTI	GATC	1 cut(s)	670
BstMAI	GTCTC	3 cut(s)	10, 73, 407
BstMBI	GATC	1 cut(s)	667
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 301, 493, 512, 542, 551, 560, 563, 637
BstNI	CCWGG	4 cut(s)	297, 407, 615, 665
BstNSI	RCATGY	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	608
BstSCI	CCNGG	6 cut(s)	9, 106, 295, 405, 613, 663
BstV1I	GCAGC	4 cut(s)	310, 505, 541, 550
BstV2I	GAAGAC	2 cut(s)	434, 443
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	5 cut(s)	42, 91, 304, 536, 573
BtgI	CCRYGG	1 cut(s)	580
BtgZI	GCGATG	1 cut(s)	521
BtsCI	GGATG	3 cut(s)	157, 203, 659
BtsIMutI	CAGTG	2 cut(s)	130, 214
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	534
CaiI	CAGNNNCTG	2 cut(s)	466, 499
Cfr10I	RCCGGY	1 cut(s)	532
Cfr13I	GGNCC	2 cut(s)	90, 535
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	674
CviAII	CATG	4 cut(s)	228, 529, 637, 671
CviQI	GTAC	1 cut(s)	674
DpnI	GATC	1 cut(s)	669
DpnII	GATC	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	2 cut(s)	67, 668
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	10
Eco57I	CTGAAG	2 cut(s)	488, 521
Eco91I	GGTNACC	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	608
EcoRII	CCWGG	4 cut(s)	295, 405, 613, 663
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	4 cut(s)	231, 532, 640, 674
FaiI	YATR	5 cut(s)	229, 287, 530, 638, 672
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	4 cut(s)	227, 528, 636, 670
Fnu4HI	GCNGC	5 cut(s)	324, 494, 555, 564, 648
FokI	GGATG	3 cut(s)	164, 190, 646
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	5 cut(s)	324, 494, 555, 564, 648
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	5 cut(s)	324, 494, 555, 564, 648
GsuI	CTGGAG	2 cut(s)	389, 509
HaeIII	GGCC	5 cut(s)	42, 91, 304, 536, 573
HapII	CCGG	4 cut(s)	11, 108, 533, 551
HgaI	GACGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	4 cut(s)	231, 532, 640, 674
HinfI	GANTC	5 cut(s)	162, 170, 200, 355, 389
HpaII	CCGG	4 cut(s)	11, 108, 533, 551
HphI	GGTGA	2 cut(s)	364, 380
Hpy188I	TCNGA	2 cut(s)	347, 475
Hpy188III	TCNNGA	2 cut(s)	272, 449
Hpy99I	CGWCG	2 cut(s)	53, 56
HpyAV	CCTTC	4 cut(s)	91, 294, 379, 496
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	4 cut(s)	212, 515, 545, 557
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 301, 493, 512, 542, 551, 560, 563, 637
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	4 cut(s)	231, 532, 640, 674
KroI	GCCGGC	1 cut(s)	532
KroNI	GCCGGC	1 cut(s)	534
Kzo9I	GATC	1 cut(s)	667
LmnI	GCTCC	4 cut(s)	116, 224, 292, 490
Lsp1109I	GCAGC	4 cut(s)	310, 505, 541, 550
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	360, 608
MalI	GATC	1 cut(s)	669
MboI	GATC	1 cut(s)	667
MboII	GAAGA	4 cut(s)	108, 424, 439, 448
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	4 cut(s)	275, 394, 422, 546
MlyI	GAGTC	2 cut(s)	156, 383
MnlI	CCTC	9 cut(s)	53, 82, 85, 113, 124, 151, 180, 456, 549
MroNI	GCCGGC	1 cut(s)	532
MseI	TTAA	2 cut(s)	417, 694
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	4 cut(s)	11, 108, 533, 551
MspR9I	CCNGG	6 cut(s)	11, 108, 297, 407, 615, 665
MvaI	CCWGG	4 cut(s)	297, 407, 615, 665
MwoI	GCNNNNNNNGC	9 cut(s)	97, 301, 493, 512, 542, 551, 560, 563, 637
NaeI	GCCGGC	1 cut(s)	534
NciI	CCSGG	2 cut(s)	11, 108
NdeII	GATC	1 cut(s)	667
NgoMIV	GCCGGC	1 cut(s)	532
NlaIII	CATG	4 cut(s)	231, 532, 640, 674
NlaIV	GGNNCC	4 cut(s)	112, 294, 537, 597
NmeAIII	GCCGAG	1 cut(s)	546
NspI	RCATGY	1 cut(s)	231
PaqCI	CACCTGC	1 cut(s)	652
PasI	CCCWGGG	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	534
PfeI	GAWTC	3 cut(s)	170, 200, 355
PfoI	TCCNGGA	1 cut(s)	405
PkrI	GCNGC	5 cut(s)	325, 495, 556, 565, 649
PleI	GAGTC	2 cut(s)	156, 383
PpsI	GAGTC	2 cut(s)	156, 383
Ppu21I	YACGTR	1 cut(s)	365
Psp6I	CCWGG	4 cut(s)	295, 405, 613, 663
PspEI	GGTNACC	1 cut(s)	608
PspGI	CCWGG	4 cut(s)	295, 405, 613, 663
PspN4I	GGNNCC	4 cut(s)	112, 294, 537, 597
PspPI	GGNCC	2 cut(s)	90, 535
PstNI	CAGNNNCTG	2 cut(s)	466, 499
RsaI	GTAC	1 cut(s)	675
RsaNI	GTAC	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	417, 694
SatI	GCNGC	5 cut(s)	324, 494, 555, 564, 648
Sau3AI	GATC	1 cut(s)	667
Sau96I	GGNCC	2 cut(s)	90, 535
SchI	GAGTC	2 cut(s)	156, 383
ScrFI	CCNGG	6 cut(s)	11, 108, 297, 407, 615, 665
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	5 cut(s)	221, 367, 489, 527, 646
SfaNI	GCATC	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	4 cut(s)	275, 394, 422, 546
SsiI	CCGC	3 cut(s)	78, 648, 679
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	6 cut(s)	9, 106, 295, 405, 613, 663
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	48
TasI	AATT	4 cut(s)	275, 394, 422, 546
TatI	WGTACW	1 cut(s)	673
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	3 cut(s)	170, 200, 355
Tru1I	TTAA	2 cut(s)	417, 694
Tru9I	TTAA	2 cut(s)	417, 694
TscAI	CASTG	2 cut(s)	130, 214
TseI	GCWGC	4 cut(s)	323, 493, 554, 563
TspDTI	ATGAA	3 cut(s)	517, 592, 625
TspGWI	ACGGA	3 cut(s)	109, 329, 597
TspRI	CASTG	2 cut(s)	130, 214
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.