Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Forward (+)

45855841 .. 45857184

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1336500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGGTTCCCCGCCGCAGAATCCCAACTGGGTCTTCGATTATGGTGTGATTGAGGACATTCTTGTGCCAGGCGGTGAACTTCCGTCGCTTGACCCGCCCGGTTTCTCTTGGCCGGATCATTCATTTGCTGGTCCGACTGCTCCCAGCACGGAATTTGATGACTCATTTGGAAATCCAGACAGCATGAAGGAAACTGGGTTGCGAAAACGGTATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

73

Amino Acids

7.83

Weight (kDa)

4.14

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	11, 14, 72, 95
AclWI	GGATC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AlwI	GGATC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	99
BfaI	CTAG	1 cut(s)	217
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	69, 99
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	69, 99
BmrI	ACTGGG	2 cut(s)	37, 204
BmuI	ACTGGG	2 cut(s)	37, 204
BpiI	GAAGAC	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	32, 199
BseBI	CCWGG	1 cut(s)	69
BseNI	ACTGG	2 cut(s)	32, 199
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	99, 113
BsnI	GGCC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	4 cut(s)	11, 14, 72, 95
BspANI	GGCC	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	32, 199
BssMI	GATC	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	210
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	2 cut(s)	67, 97
BstV2I	GAAGAC	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	2 cut(s)	112, 216
CviKI_1	RGCY	2 cut(s)	112, 216
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	187
FaiI	YATR	3 cut(s)	42, 185, 213
FatI	CATG	1 cut(s)	183
FauI	CCCGC	2 cut(s)	18, 102
Fnu4HI	GCNGC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	217
GluI	GCNGC	1 cut(s)	14
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	2 cut(s)	99, 113
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	2 cut(s)	19, 161
HpaII	CCGG	2 cut(s)	99, 113
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	9 cut(s)	13, 54, 81, 112, 114, 126, 157, 180, 189
MaeI	CTAG	1 cut(s)	217
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	1 cut(s)	46
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	2 cut(s)	99, 113
MspR9I	CCNGG	2 cut(s)	69, 99
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	62
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	69, 99
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	4 cut(s)	11, 14, 72, 95
SspMI	CTAG	1 cut(s)	217
StyD4I	CCNGG	2 cut(s)	67, 97
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	152
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	111, 200
TspGWI	ACGGA	2 cut(s)	72, 164
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	152
XspI	CTAG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.