MD10G1312000.v1.1

Transcription factor ILR3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0003582
Physical Location & Seq
Forward (+)
39656085 .. 39657490
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1312000.v1.1.491

Sequence Viewer

Length: 249 bp
ATGGGTTCGCCGCCGCAAAATCCCAACTGGGTCCTCGATTATGGTGTGATTGACGACATTCTTGTACCTGGTGGTGAACTTCCCTCTCTGGACCCGCCCGGTTTCTCTTGGCCGGATCATTCATTTGCCGGTCCCACCGCCCCCAGCGTGGAATTTGATGACTCGTTTGGAAATCCAGATGGCATGAAGGAAACTGGGTTGCGGAAACGGTATGGCGAGGACTGGATCATGCAATGTGTCTGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

83

Amino Acids

9.08

Weight (kDa)

4.05

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 11, 14, 95, 138, 202
AclWI GGATC 2 cut(s) 123, 233
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 148
AjnI CCWGG 1 cut(s) 67
AlwI GGATC 2 cut(s) 123, 233
AoxI GGCC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 152
AspS9I GGNCC 3 cut(s) 31, 91, 131
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 3 cut(s) 31, 91, 131
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 69
BcnI CCSGG 1 cut(s) 99
BisI GCNGC 2 cut(s) 11, 14
BlsI GCNGC 2 cut(s) 12, 15
Bme1390I CCNGG 2 cut(s) 69, 99
Bme18I GGWCC 3 cut(s) 31, 91, 131
BmgT120I GGNCC 3 cut(s) 31, 91, 131
BmiI GGNNCC 3 cut(s) 32, 93, 133
BmrFI CCNGG 2 cut(s) 69, 99
BmrI ACTGGG 2 cut(s) 37, 204
BmuI ACTGGG 2 cut(s) 37, 204
BpuMI CCSGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 3 cut(s) 32, 199, 227
Bse3DI GCAATG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 239
BseNI ACTGG 3 cut(s) 32, 199, 227
BseYI CCCAGC 1 cut(s) 143
BshFI GGCC 1 cut(s) 112
BsiSI CCGG 3 cut(s) 99, 113, 129
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 1 cut(s) 112
Bsp143I GATC 2 cut(s) 115, 225
BspACI CCGC 5 cut(s) 11, 14, 95, 138, 202
BspANI GGCC 1 cut(s) 112
BspLI GGNNCC 3 cut(s) 32, 93, 133
BspPI GGATC 2 cut(s) 123, 233
BsrDI GCAATG 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 3 cut(s) 32, 199, 227
BssAI RCCGGY 1 cut(s) 128
BssMI GATC 2 cut(s) 115, 225
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 210
BstKTI GATC 2 cut(s) 118, 228
BstMBI GATC 2 cut(s) 115, 225
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 2 cut(s) 67, 97
BsuRI GGCC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 31, 91, 131
CsiI ACCWGGT 1 cut(s) 67
Csp6I GTAC 1 cut(s) 65
CviAII CATG 2 cut(s) 184, 229
CviJI RGCY 1 cut(s) 112
CviKI_1 RGCY 1 cut(s) 112
CviQI GTAC 1 cut(s) 65
DpnI GATC 2 cut(s) 117, 227
DpnII GATC 2 cut(s) 115, 225
EaeI YGGCCR 1 cut(s) 110
Eco47I GGWCC 3 cut(s) 31, 91, 131
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 2 cut(s) 187, 232
FaiI YATR 4 cut(s) 42, 185, 213, 230
FaqI GGGAC 1 cut(s) 117
FatI CATG 2 cut(s) 183, 228
FauI CCCGC 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 11, 14
Fsp4HI GCNGC 2 cut(s) 11, 14
GluI GCNGC 2 cut(s) 11, 14
GsaI CCCAGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 112
HapII CCGG 3 cut(s) 99, 113, 129
Hin1II CATG 2 cut(s) 187, 232
HinfI GANTC 1 cut(s) 161
HpaII CCGG 3 cut(s) 99, 113, 129
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 89, 176
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 232
Hsp92II CATG 2 cut(s) 187, 232
Kzo9I GATC 2 cut(s) 115, 225
MabI ACCWGGT 1 cut(s) 67
MalI GATC 2 cut(s) 117, 227
MboI GATC 2 cut(s) 115, 225
MluCI AATT 1 cut(s) 152
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 3 cut(s) 44, 94, 211
MspI CCGG 3 cut(s) 99, 113, 129
MspR9I CCNGG 2 cut(s) 69, 99
MvaI CCWGG 1 cut(s) 69
NciI CCSGG 1 cut(s) 99
NdeII GATC 2 cut(s) 115, 225
NlaIII CATG 2 cut(s) 187, 232
NlaIV GGNNCC 3 cut(s) 32, 93, 133
PkrI GCNGC 2 cut(s) 12, 15
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 3 cut(s) 32, 93, 133
PspPI GGNCC 3 cut(s) 31, 91, 131
PspPPI RGGWCCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SatI GCNGC 2 cut(s) 11, 14
Sau3AI GATC 2 cut(s) 115, 225
Sau96I GGNCC 3 cut(s) 31, 91, 131
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 69, 99
SetI ASST 1 cut(s) 70
SexAI ACCWGGT 1 cut(s) 67
SinI GGWCC 3 cut(s) 31, 91, 131
Sse9I AATT 1 cut(s) 152
SsiI CCGC 5 cut(s) 11, 14, 95, 138, 202
StyD4I CCNGG 2 cut(s) 67, 97
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 152
TauI GCSGC 2 cut(s) 13, 16
TspDTI ATGAA 2 cut(s) 111, 200
VpaK11BI GGWCC 3 cut(s) 31, 91, 131
XapI RAATTY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.