Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Forward (+)

31539562 .. 31543580

Gene Structure 4019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGCTATGTTTTGGATTCAAGTGTTGAACTTGATGGCTCATTGGGGGATGTAGAGGGACTCAAGGAATCTGGCTCAAAAAAGAGGGTTAGATCTGAATCATCCAGTGCATCTAGCTCCAAGGCATGTAGGGAGAAGTTGCGGAGGGATAGGCTGAACGACAAGTTTGTGGAATTGGGCTCTATATTGGAGCCTGGAAGGCCACCCAAGACGGACAAGGCTGCTATTTTGATTGATGCTGTCCGAATGGTGAATCAGTTACGTGGTGAAGCCCAGAAGTTGAAGGACTCAAATTCAAGCCTCCAGGAGAAGATCAAGGAATTGAAGACAGAGAAGACTGAACTTCGTGATGAGAAGCAGAGGCTGAAATCAGAGAAAGAGAAGTTGGAGCAGCAACTGAAGGCAATGACGGCACAGCCGAGCTTCATGCCAGCCCCTCCTGCAATTCCTGCTGCATTTGCTGCCCAAGGCCAAGCCCATGGCAACAAGATGGTGCCTTTCATTGGTTACCCTGGGGTTGCCATGTGGCAGTTCATGCCACCTGCTGCAGTGGATACATCCCAGGATCATGTACTCCGCCCACCAGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

197

Amino Acids

21.66

Weight (kDa)

9.25

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_IRO3	PF23177	40 - 105	1.3e-10	Iron-related transcription factor 3 bHLH domain
HLH	PF00010	40 - 88	1.2e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	550
Acc36I	ACCTGC	1 cut(s)	550
AccB1I	GGYRCC	1 cut(s)	493
AciI	CCGC	2 cut(s)	142, 577
AclWI	GGATC	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	503
AgsI	TTSAA	5 cut(s)	21, 29, 283, 297, 325
AjnI	CCWGG	4 cut(s)	193, 303, 511, 561
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	2 cut(s)	117, 423
AluI	AGCT	2 cut(s)	117, 423
AlwI	GGATC	1 cut(s)	573
AlwNI	CAGNNNCTG	2 cut(s)	364, 397
AoxI	GGCC	2 cut(s)	200, 469
ApeKI	GCWGC	5 cut(s)	221, 391, 452, 461, 545
ApoI	RAATTY	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	262, 278
BanI	GGYRCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	182
BbsI	GAAGAC	2 cut(s)	332, 341
BbvI	GCAGC	5 cut(s)	208, 403, 439, 448, 532
BccI	CCATC	2 cut(s)	29, 484
BceAI	ACGGC	1 cut(s)	426
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	4 cut(s)	195, 305, 513, 563
BciVI	GTATCC	1 cut(s)	547
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	547
BglI	GCCNNNNNGGC	1 cut(s)	199
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	5 cut(s)	222, 392, 453, 462, 546
BlsI	GCNGC	5 cut(s)	223, 393, 454, 463, 547
Bme1390I	CCNGG	4 cut(s)	195, 305, 513, 563
BmiI	GGNNCC	2 cut(s)	192, 495
BmrFI	CCNGG	4 cut(s)	195, 305, 513, 563
BmsI	GCATC	2 cut(s)	119, 226
BpiI	GAAGAC	2 cut(s)	332, 341
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	97
BsaJI	CCNNGG	6 cut(s)	120, 466, 478, 511, 512, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	105, 584
Bse3DI	GCAATG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	97
BseBI	CCWGG	4 cut(s)	195, 305, 513, 563
BseDI	CCNNGG	6 cut(s)	120, 466, 478, 511, 512, 561
BseGI	GGATG	3 cut(s)	55, 101, 557
BseJI	GATNNNNATC	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMI	GCAATG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	105, 584
BseXI	GCAGC	5 cut(s)	208, 403, 439, 448, 532
BshFI	GGCC	2 cut(s)	202, 471
BshNI	GGYRCC	1 cut(s)	493
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	202, 471
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	92, 312, 565
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	2 cut(s)	142, 577
BspANI	GGCC	2 cut(s)	202, 471
BspLI	GGNNCC	2 cut(s)	192, 495
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	1 cut(s)	573
BspT107I	GGYRCC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	105, 584
BssECI	CCNNGG	6 cut(s)	120, 466, 478, 511, 512, 561
BssMI	GATC	3 cut(s)	92, 312, 565
BssT1I	CCWWGG	3 cut(s)	120, 466, 478
Bst2UI	CCWGG	4 cut(s)	195, 305, 513, 563
BstAPI	GCANNNNNTGC	3 cut(s)	449, 461, 535
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	478
BstEII	GGTNACC	1 cut(s)	506
BstF5I	GGATG	3 cut(s)	55, 101, 557
BstKTI	GATC	3 cut(s)	95, 315, 568
BstMBI	GATC	3 cut(s)	92, 312, 565
BstMWI	GCNNNNNNNGC	7 cut(s)	199, 410, 440, 449, 458, 461, 535
BstNI	CCWGG	4 cut(s)	195, 305, 513, 563
BstNSI	RCATGY	1 cut(s)	129
BstPI	GGTNACC	1 cut(s)	506
BstSCI	CCNGG	4 cut(s)	193, 303, 511, 561
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	5 cut(s)	208, 403, 439, 448, 532
BstV2I	GAAGAC	2 cut(s)	332, 341
BstX2I	RGATCY	1 cut(s)	92
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	202, 471
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	3 cut(s)	55, 101, 557
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	112, 555
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	1 cut(s)	432
CaiI	CAGNNNCTG	2 cut(s)	364, 397
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	6 cut(s)	126, 427, 479, 523, 535, 569
CviQI	GTAC	1 cut(s)	572
DpnI	GATC	3 cut(s)	94, 314, 567
DpnII	GATC	3 cut(s)	92, 312, 565
EciI	GGCGGA	1 cut(s)	566
Eco130I	CCWWGG	3 cut(s)	120, 466, 478
Eco24I	GRGCYC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	419
Eco91I	GGTNACC	1 cut(s)	506
EcoO65I	GGTNACC	1 cut(s)	506
EcoRII	CCWGG	4 cut(s)	193, 303, 511, 561
EcoT14I	CCWWGG	3 cut(s)	120, 466, 478
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	3 cut(s)	120, 466, 478
FaeI	CATG	6 cut(s)	129, 430, 482, 526, 538, 572
FaiI	YATR	8 cut(s)	9, 127, 185, 428, 480, 524, 536, 570
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	6 cut(s)	125, 426, 478, 522, 534, 568
Fnu4HI	GCNGC	5 cut(s)	222, 392, 453, 462, 546
FokI	GGATG	3 cut(s)	62, 88, 544
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	5 cut(s)	222, 392, 453, 462, 546
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	5 cut(s)	222, 392, 453, 462, 546
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	2 cut(s)	202, 471
Hin1II	CATG	6 cut(s)	129, 430, 482, 526, 538, 572
HinfI	GANTC	6 cut(s)	17, 60, 68, 98, 253, 287
HphI	GGTGA	2 cut(s)	262, 278
Hpy188I	TCNGA	3 cut(s)	97, 245, 373
Hpy188III	TCNNGA	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	192, 277, 394
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	4 cut(s)	110, 443, 455, 548
HpyF10VI	GCNNNNNNNGC	7 cut(s)	199, 410, 440, 449, 458, 461, 535
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	6 cut(s)	129, 430, 482, 526, 538, 572
Kzo9I	GATC	3 cut(s)	92, 312, 565
LmnI	GCTCC	3 cut(s)	122, 190, 388
Lsp1109I	GCAGC	5 cut(s)	208, 403, 439, 448, 532
LweI	GCATC	2 cut(s)	119, 226
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	2 cut(s)	258, 506
MalI	GATC	3 cut(s)	94, 314, 567
MboI	GATC	3 cut(s)	92, 312, 565
MboII	GAAGA	3 cut(s)	322, 337, 346
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	4 cut(s)	173, 292, 320, 444
MlyI	GAGTC	2 cut(s)	54, 281
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	6 cut(s)	49, 78, 138, 311, 354, 447
MseI	TTAA	1 cut(s)	592
MspR9I	CCNGG	4 cut(s)	195, 305, 513, 563
MvaI	CCWGG	4 cut(s)	195, 305, 513, 563
MwoI	GCNNNNNNNGC	7 cut(s)	199, 410, 440, 449, 458, 461, 535
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	3 cut(s)	92, 312, 565
NlaIII	CATG	6 cut(s)	129, 430, 482, 526, 538, 572
NlaIV	GGNNCC	2 cut(s)	192, 495
NmeAIII	GCCGAG	1 cut(s)	444
NspI	RCATGY	1 cut(s)	129
PaqCI	CACCTGC	1 cut(s)	550
PasI	CCCWGGG	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PfeI	GAWTC	4 cut(s)	17, 68, 98, 253
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	5 cut(s)	223, 393, 454, 463, 547
PleI	GAGTC	2 cut(s)	54, 281
PpsI	GAGTC	2 cut(s)	54, 281
Ppu21I	YACGTR	1 cut(s)	263
Psp6I	CCWGG	4 cut(s)	193, 303, 511, 561
PspEI	GGTNACC	1 cut(s)	506
PspGI	CCWGG	4 cut(s)	193, 303, 511, 561
PspN4I	GGNNCC	2 cut(s)	192, 495
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	2 cut(s)	364, 397
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
SaqAI	TTAA	1 cut(s)	592
SatI	GCNGC	5 cut(s)	222, 392, 453, 462, 546
Sau3AI	GATC	3 cut(s)	92, 312, 565
SchI	GAGTC	2 cut(s)	54, 281
ScrFI	CCNGG	4 cut(s)	195, 305, 513, 563
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	4 cut(s)	119, 265, 425, 544
SfaNI	GCATC	2 cut(s)	119, 226
SfcI	CTRYAG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	4 cut(s)	173, 292, 320, 444
SsiI	CCGC	2 cut(s)	142, 577
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	4 cut(s)	193, 303, 511, 561
StyI	CCWWGG	3 cut(s)	120, 466, 478
TaiI	ACGT	1 cut(s)	265
TasI	AATT	4 cut(s)	173, 292, 320, 444
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	4 cut(s)	17, 68, 98, 253
Tru1I	TTAA	1 cut(s)	592
Tru9I	TTAA	1 cut(s)	592
TscAI	CASTG	2 cut(s)	112, 555
TseI	GCWGC	5 cut(s)	221, 391, 452, 461, 545
TspDTI	ATGAA	3 cut(s)	415, 490, 523
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	112, 555
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	129
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.