Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Forward (+)

30760320 .. 30762027

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGTTCACCGCCGCAGAATCCCAACTGGGTATTCGATTATGGTGTGATTGAGGACATTCTTGTGCCAGGCGGTGAACTTCCGTCTCTTGACCCGCCCGGTTTCTCTTGGCCGGATCATTCATTTGCCGGTCCGACCGCTCCCAGCACGGAATTTGATGACTCATTTGGAAATCCAGACAGCATGAAGGAAACTGGGTTGCGAAAACGGGCGAGGACTGGATCAAGCAGTGTGTTTGTGGAATTGAGTTCTATCCTTGAACCTGGAAGGCCACCCAAAACTGACAAGGTTGCTGTACTGGGTGATGCTGTTCGAATGGTAACTCAGTTACGTGGGGAAGCCCTACAGCTAAAGGAGTCAAGTGCAAATCTGCAGGAGACGATAAATGAGTTGAAGGCTGAGAAGAATGAACTTCGTGATGAGAAGCAGAGGCTGAAAGTGGAGAAGGACAACATCGAGCGTCAAATTAAAGCCTTGGGTACTCAACCAAGCTTCCTTCCTCACCCTGCTGCAATCCCAACTCCGTTTTCTGCCCCGGGCCAAGTTGTTGGCGGGAAAATGATGCCCTTCGTCGGATACCCTGGAATGTCCATGTGGCAGTTCATGCCACCAGCTGCAGTTGATACCTCACAGGACCATGTTCTCCGCCCTCCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

221

Amino Acids

23.95

Weight (kDa)

5.16

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	7 cut(s)	11, 14, 72, 95, 138, 552, 646
AclWI	GGATC	2 cut(s)	123, 229
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	2 cut(s)	297, 481
AfiI	CCNNNNNNNGG	1 cut(s)	572
AgsI	TTSAA	2 cut(s)	260, 394
AjnI	CCWGG	3 cut(s)	67, 262, 580
AjuI	GAANNNNNNNTTGG	4 cut(s)	17, 49, 511, 543
AluBI	AGCT	3 cut(s)	349, 492, 614
AluI	AGCT	3 cut(s)	349, 492, 614
Alw26I	GTCTC	2 cut(s)	90, 371
AlwI	GGATC	2 cut(s)	123, 229
AlwNI	CAGNNNCTG	1 cut(s)	433
Ama87I	CYCGRG	1 cut(s)	535
AoxI	GGCC	3 cut(s)	110, 269, 538
ApeKI	GCWGC	2 cut(s)	509, 614
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	3 cut(s)	131, 538, 634
AsuC2I	CCSGG	3 cut(s)	99, 536, 537
AsuHPI	GGTGA	3 cut(s)	86, 314, 494
AsuII	TTCGAA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	535
AvaII	GGWCC	2 cut(s)	131, 634
BbvI	GCAGC	2 cut(s)	496, 601
BciT130I	CCWGG	3 cut(s)	69, 264, 582
BciVI	GTATCC	1 cut(s)	569
BcnI	CCSGG	3 cut(s)	99, 536, 537
BcoDI	GTCTC	2 cut(s)	90, 371
BfmI	CTRYAG	3 cut(s)	344, 371, 615
BfuI	GTATCC	1 cut(s)	569
BisI	GCNGC	3 cut(s)	14, 510, 615
BlsI	GCNGC	3 cut(s)	15, 511, 616
Bme1390I	CCNGG	6 cut(s)	69, 99, 264, 536, 537, 582
Bme18I	GGWCC	2 cut(s)	131, 634
BmeT110I	CYCGRG	1 cut(s)	535
BmgT120I	GGNCC	3 cut(s)	131, 538, 634
BmrFI	CCNGG	6 cut(s)	69, 99, 264, 536, 537, 582
BmrI	ACTGGG	3 cut(s)	37, 204, 308
BmsI	GCATC	2 cut(s)	295, 552
BmuI	ACTGGG	3 cut(s)	37, 204, 308
Bpu14I	TTCGAA	1 cut(s)	313
BpuMI	CCSGG	3 cut(s)	99, 536, 537
BsaAI	YACGTR	1 cut(s)	332
BsaJI	CCNNGG	4 cut(s)	474, 534, 535, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	4 cut(s)	32, 199, 223, 303
BseBI	CCWGG	3 cut(s)	69, 264, 582
BseDI	CCNNGG	4 cut(s)	474, 534, 535, 580
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMII	CTCAG	2 cut(s)	338, 390
BseNI	ACTGG	4 cut(s)	32, 199, 223, 303
BseXI	GCAGC	2 cut(s)	496, 601
BseYI	CCCAGC	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	112, 271, 540
BsiEI	CGRYCG	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	535
BsiSI	CCGG	4 cut(s)	99, 113, 129, 536
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	2 cut(s)	90, 371
BsmBI	CGTCTC	2 cut(s)	90, 371
BsnI	GGCC	3 cut(s)	112, 271, 540
BsoBI	CYCGRG	1 cut(s)	535
Bsp119I	TTCGAA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	115, 221
BspACI	CCGC	7 cut(s)	11, 14, 72, 95, 138, 552, 646
BspANI	GGCC	3 cut(s)	112, 271, 540
BspCNI	CTCAG	2 cut(s)	337, 391
BspMAI	CTGCAG	2 cut(s)	375, 619
BspPI	GGATC	2 cut(s)	123, 229
BspT104I	TTCGAA	1 cut(s)	313
BsrBI	CCGCTC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	4 cut(s)	32, 199, 223, 303
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	4 cut(s)	474, 534, 535, 580
BssMI	GATC	2 cut(s)	115, 221
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	3 cut(s)	69, 264, 582
BstAPI	GCANNNNNTGC	1 cut(s)	604
BstBAI	YACGTR	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	324, 399
BstKTI	GATC	2 cut(s)	118, 224
BstMAI	GTCTC	2 cut(s)	90, 371
BstMBI	GATC	2 cut(s)	115, 221
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNI	CCWGG	3 cut(s)	69, 264, 582
BstSCI	CCNGG	6 cut(s)	67, 97, 262, 534, 535, 580
BstSFI	CTRYAG	3 cut(s)	344, 371, 615
BstV1I	GCAGC	2 cut(s)	496, 601
BstXI	CCANNNNNNTGG	1 cut(s)	548
BsuI	GTATCC	1 cut(s)	569
BsuRI	GGCC	3 cut(s)	112, 271, 540
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	131, 538, 634
Cfr9I	CCCGGG	1 cut(s)	535
CpoI	CGGWCCG	1 cut(s)	131
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	296, 480
CspI	CGGWCCG	1 cut(s)	131
CviAII	CATG	4 cut(s)	184, 592, 604, 638
CviQI	GTAC	2 cut(s)	296, 480
DdeI	CTNAG	2 cut(s)	324, 399
DpnI	GATC	2 cut(s)	117, 223
DpnII	GATC	2 cut(s)	115, 221
EaeI	YGGCCR	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	635
Eco130I	CCWWGG	1 cut(s)	474
Eco47I	GGWCC	2 cut(s)	131, 634
Eco88I	CYCGRG	1 cut(s)	535
EcoRII	CCWGG	3 cut(s)	67, 262, 580
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
Esp3I	CGTCTC	2 cut(s)	90, 371
FaeI	CATG	4 cut(s)	187, 595, 607, 641
FaiI	YATR	5 cut(s)	42, 185, 593, 605, 639
FatI	CATG	4 cut(s)	183, 591, 603, 637
FauI	CCCGC	2 cut(s)	102, 545
Fnu4HI	GCNGC	3 cut(s)	14, 510, 615
Fsp4HI	GCNGC	3 cut(s)	14, 510, 615
GluI	GCNGC	3 cut(s)	14, 510, 615
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	112, 271, 540
HapII	CCGG	4 cut(s)	99, 113, 129, 536
HgaI	GACGC	1 cut(s)	449
Hin1II	CATG	4 cut(s)	187, 595, 607, 641
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	3 cut(s)	19, 161, 356
HpaII	CCGG	4 cut(s)	99, 113, 129, 536
HphI	GGTGA	3 cut(s)	86, 314, 494
Hpy166II	GTNNAC	2 cut(s)	8, 77
Hpy188I	TCNGA	2 cut(s)	135, 575
Hpy188III	TCNNGA	3 cut(s)	89, 176, 416
Hpy8I	GTNNAC	2 cut(s)	8, 77
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	6 cut(s)	181, 261, 388, 439, 506, 577
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	4 cut(s)	365, 373, 512, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpyF3I	CTNAG	2 cut(s)	324, 399
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	4 cut(s)	187, 595, 607, 641
Kzo9I	GATC	2 cut(s)	115, 221
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	2 cut(s)	496, 601
LweI	GCATC	2 cut(s)	295, 552
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	319, 327
MalI	GATC	2 cut(s)	117, 223
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	2 cut(s)	115, 221
MboII	GAAGA	1 cut(s)	415
MluCI	AATT	3 cut(s)	152, 242, 465
MlyI	GAGTC	2 cut(s)	155, 365
MmeI	TCCRAC	2 cut(s)	158, 553
MnlI	CCTC	6 cut(s)	46, 207, 423, 510, 637, 660
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	4 cut(s)	99, 113, 129, 536
MspR9I	CCNGG	6 cut(s)	69, 99, 264, 536, 537, 582
MvaI	CCWGG	3 cut(s)	69, 264, 582
MwoI	GCNNNNNNNGC	1 cut(s)	604
NciI	CCSGG	3 cut(s)	99, 536, 537
NdeII	GATC	2 cut(s)	115, 221
NlaIII	CATG	4 cut(s)	187, 595, 607, 641
NspV	TTCGAA	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	15, 511, 616
PleI	GAGTC	2 cut(s)	155, 364
PpsI	GAGTC	2 cut(s)	155, 364
Ppu21I	YACGTR	1 cut(s)	332
Psp6I	CCWGG	3 cut(s)	67, 262, 580
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	3 cut(s)	67, 262, 580
PspPI	GGNCC	3 cut(s)	131, 538, 634
PstI	CTGCAG	2 cut(s)	375, 619
PstNI	CAGNNNCTG	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	2 cut(s)	297, 481
RsaNI	GTAC	2 cut(s)	296, 480
RseI	CAYNNNNRTG	1 cut(s)	62
Rsr2I	CGGWCCG	1 cut(s)	131
RsrII	CGGWCCG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	3 cut(s)	14, 510, 615
Sau3AI	GATC	2 cut(s)	115, 221
Sau96I	GGNCC	3 cut(s)	131, 538, 634
SchI	GAGTC	2 cut(s)	155, 365
ScrFI	CCNGG	6 cut(s)	69, 99, 264, 536, 537, 582
SetI	ASST	7 cut(s)	265, 291, 334, 351, 494, 616, 629
SfaNI	GCATC	2 cut(s)	295, 552
SfcI	CTRYAG	3 cut(s)	344, 371, 615
SfuI	TTCGAA	1 cut(s)	313
SinI	GGWCC	2 cut(s)	131, 634
SmaI	CCCGGG	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	152, 242, 465
SsiI	CCGC	7 cut(s)	11, 14, 72, 95, 138, 552, 646
StyD4I	CCNGG	6 cut(s)	67, 97, 262, 534, 535, 580
StyI	CCWWGG	1 cut(s)	474
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	3 cut(s)	36, 313, 456
TasI	AATT	3 cut(s)	152, 242, 465
TatI	WGTACW	1 cut(s)	295
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	2 cut(s)	509, 614
TspDTI	ATGAA	4 cut(s)	111, 200, 423, 592
TspGWI	ACGGA	3 cut(s)	72, 164, 513
TspMI	CCCGGG	1 cut(s)	535
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	131, 634
XapI	RAATTY	1 cut(s)	152
XmaI	CCCGGG	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.