Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Reverse (-)

3790385 .. 3792863

Gene Structure 2479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G003780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTGCTCCTGTTTCTTCTTCTTCGCCGCCGCCGCAGAATTGGGTCTTCGATTATGATCTGATTGAGAGCATCTCTGTTCCCGGTGGTGACTTGCCTTCTCTTGACCCGCCCGGTTTCTCTTGGGGCTCCGATTCGTTTCCCGCTCCGACCGCCCCAAGCGTGGACTTTGATGGCTCATTTGGAAATTCTGAGATTATGAAGGAAACTGGGTCGAACAAACGTGCGAGGTCCGGATCGTGCAATGTGTCTGGTTCTAAAGCCTGTAGAGAGAAAATGCGGAGGGACAGACTGAATGACAAGTTCCTGGAATTGAGTACTATCCTTGAACCTGGAAGGCCACCTAAAACTGACAAAGCTGCTATATTGGTTGATGCTGTTCGAATGGTGAATCAGTTACGTGGGGAAGCCCAAAATCTGAAGGAGTCGAGTGAGAGTCTGCAGGAGAAGATAACTGAATTGAAGGCTGAGAAGAACGAACTTCGTGATGAGAAGCAGAGGCTAAAAGCAGAGAAAGAGAACCTTGAGCGGCAAATTAAAGCCTTAGGTACACAACCGGGCTTCTTGCCTCACCCTGCTGCGATTCCAGCTCCATTTTCTGCCCCCGGCCAAGTTATTGGCGGTAAACTGATGCCGTTCATGGGATATCCTGGAGTTTCTGGATACCCTGGAGTTTCTATGTGGCAGTTCATGCCACAGGCTGCAGTTGATACATCACAAGATCATGTTCTCCGTCCCCCAGTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

249

Amino Acids

27.01

Weight (kDa)

5.84

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	86 - 134	2.2e-10	Helix-loop-helix DNA-binding domain
bHLH_IRO3	PF23177	87 - 150	4e-07	Iron-related transcription factor 3 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	146, 529
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	9 cut(s)	29, 32, 35, 110, 144, 153, 280, 529, 621
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	607
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	319, 550
AfiI	CCNNNNNNNGG	2 cut(s)	163, 641
AgsI	TTSAA	2 cut(s)	329, 463
AjnI	CCWGG	4 cut(s)	306, 331, 649, 667
AluBI	AGCT	2 cut(s)	359, 590
AluI	AGCT	2 cut(s)	359, 590
AlwI	GGATC	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	2 cut(s)	338, 607
ApeKI	GCWGC	4 cut(s)	5, 359, 578, 701
ApoI	RAATTY	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	231
AsuC2I	CCSGG	4 cut(s)	84, 114, 558, 606
AsuHPI	GGTGA	3 cut(s)	101, 400, 563
AsuII	TTCGAA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	231
AxyI	CCTNAGG	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	346, 565, 688
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	619
BciT130I	CCWGG	4 cut(s)	308, 333, 651, 669
BciVI	GTATCC	1 cut(s)	656
BcnI	CCSGG	4 cut(s)	84, 114, 558, 606
BfmI	CTRYAG	3 cut(s)	265, 440, 702
BfuI	GTATCC	1 cut(s)	656
BisI	GCNGC	8 cut(s)	6, 29, 32, 35, 360, 530, 579, 702
BlsI	GCNGC	8 cut(s)	7, 30, 33, 36, 361, 531, 580, 703
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	8 cut(s)	84, 114, 308, 333, 558, 606, 651, 669
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	8 cut(s)	84, 114, 308, 333, 558, 606, 651, 669
BmrI	ACTGGG	2 cut(s)	219, 734
BmsI	GCATC	3 cut(s)	81, 364, 621
BmuI	ACTGGG	2 cut(s)	219, 734
BpiI	GAAGAC	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	2 cut(s)	672, 690
Bpu14I	TTCGAA	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	4 cut(s)	84, 114, 558, 606
BsaAI	YACGTR	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	604, 667
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 641
Bse1I	ACTGG	2 cut(s)	214, 740
Bse21I	CCTNAGG	1 cut(s)	544
Bse3DI	GCAATG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	57
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	4 cut(s)	308, 333, 651, 669
BseDI	CCNNGG	2 cut(s)	604, 667
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	163, 641
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	183, 459
BseNI	ACTGG	2 cut(s)	214, 740
BseXI	GCAGC	3 cut(s)	346, 565, 688
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	340, 609
BsiEI	CGRYCG	1 cut(s)	153
BsiSI	CCGG	5 cut(s)	84, 114, 234, 557, 606
BslFI	GGGAC	2 cut(s)	299, 720
BslI	CCNNNNNNNGG	2 cut(s)	163, 641
BsmFI	GGGAC	2 cut(s)	299, 720
BsnI	GGCC	2 cut(s)	340, 609
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	58, 236, 721
BspACI	CCGC	9 cut(s)	29, 32, 35, 110, 144, 153, 280, 529, 621
BspANI	GGCC	2 cut(s)	340, 609
BspCNI	CTCAG	2 cut(s)	184, 460
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	2 cut(s)	444, 706
BspPI	GGATC	1 cut(s)	244
BspT104I	TTCGAA	1 cut(s)	382
BsrBI	CCGCTC	2 cut(s)	146, 529
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	214, 740
BssECI	CCNNGG	2 cut(s)	604, 667
BssMI	GATC	3 cut(s)	58, 236, 721
Bst2UI	CCWGG	4 cut(s)	308, 333, 651, 669
BstAPI	GCANNNNNTGC	1 cut(s)	691
BstBAI	YACGTR	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	382
BstDEI	CTNAG	3 cut(s)	192, 468, 544
BstKTI	GATC	3 cut(s)	61, 239, 724
BstMBI	GATC	3 cut(s)	58, 236, 721
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 152, 587, 691
BstNI	CCWGG	4 cut(s)	308, 333, 651, 669
BstSCI	CCNGG	8 cut(s)	82, 112, 306, 331, 556, 604, 649, 667
BstSFI	CTRYAG	3 cut(s)	265, 440, 702
BstV1I	GCAGC	3 cut(s)	346, 565, 688
BstV2I	GAAGAC	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	617
Bsu36I	CCTNAGG	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	2 cut(s)	340, 609
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	318, 549
CviAII	CATG	3 cut(s)	640, 691, 725
CviQI	GTAC	2 cut(s)	318, 549
DdeI	CTNAG	3 cut(s)	192, 468, 544
DpnI	GATC	3 cut(s)	60, 238, 723
DpnII	GATC	3 cut(s)	58, 236, 721
EaeI	YGGCCR	1 cut(s)	607
Eco24I	GRGCYC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	647
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	440
Eco81I	CCTNAGG	1 cut(s)	544
EcoRII	CCWGG	4 cut(s)	306, 331, 649, 667
EcoRV	GATATC	1 cut(s)	647
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	3 cut(s)	643, 694, 728
FaiI	YATR	7 cut(s)	57, 200, 365, 641, 680, 692, 726
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	2 cut(s)	299, 720
FatI	CATG	3 cut(s)	639, 690, 724
FauI	CCCGC	2 cut(s)	117, 151
Fnu4HI	GCNGC	8 cut(s)	6, 29, 32, 35, 360, 530, 579, 702
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	8 cut(s)	6, 29, 32, 35, 360, 530, 579, 702
GluI	GCNGC	8 cut(s)	6, 29, 32, 35, 360, 530, 579, 702
GsuI	CTGGAG	2 cut(s)	672, 690
HaeIII	GGCC	2 cut(s)	340, 609
HapII	CCGG	5 cut(s)	84, 114, 234, 557, 606
Hin1II	CATG	3 cut(s)	643, 694, 728
HinfI	GANTC	5 cut(s)	134, 391, 425, 436, 583
HpaII	CCGG	5 cut(s)	84, 114, 234, 557, 606
HphI	GGTGA	3 cut(s)	101, 400, 563
Hpy166II	GTNNAC	3 cut(s)	166, 551, 626
Hpy188I	TCNGA	5 cut(s)	63, 133, 150, 193, 420
Hpy188III	TCNNGA	4 cut(s)	104, 234, 485, 660
Hpy8I	GTNNAC	3 cut(s)	166, 551, 626
HpyAV	CCTTC	5 cut(s)	108, 196, 330, 415, 457
HpyCH4IV	ACGT	2 cut(s)	223, 400
HpyCH4V	TGCA	3 cut(s)	243, 442, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 152, 587, 691
HpyF3I	CTNAG	3 cut(s)	192, 468, 544
HpySE526I	ACGT	2 cut(s)	223, 400
Hsp92II	CATG	3 cut(s)	643, 694, 728
Kpn2I	TCCGGA	1 cut(s)	233
Kzo9I	GATC	3 cut(s)	58, 236, 721
LmnI	GCTCC	4 cut(s)	13, 134, 151, 595
Lsp1109I	GCAGC	3 cut(s)	346, 565, 688
LweI	GCATC	3 cut(s)	81, 364, 621
MaeII	ACGT	2 cut(s)	223, 400
MaeIII	GTNAC	2 cut(s)	89, 396
MalI	GATC	3 cut(s)	60, 238, 723
MbiI	CCGCTC	2 cut(s)	146, 529
MboI	GATC	3 cut(s)	58, 236, 721
MboII	GAAGA	6 cut(s)	9, 12, 15, 40, 460, 484
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	5 cut(s)	40, 187, 311, 458, 534
MlyI	GAGTC	2 cut(s)	434, 445
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	4 cut(s)	222, 276, 492, 579
MroI	TCCGGA	1 cut(s)	233
MseI	TTAA	1 cut(s)	537
MspI	CCGG	5 cut(s)	84, 114, 234, 557, 606
MspR9I	CCNGG	8 cut(s)	84, 114, 308, 333, 558, 606, 651, 669
MvaI	CCWGG	4 cut(s)	308, 333, 651, 669
MwoI	GCNNNNNNNGC	4 cut(s)	34, 152, 587, 691
NciI	CCSGG	4 cut(s)	84, 114, 558, 606
NdeII	GATC	3 cut(s)	58, 236, 721
NlaIII	CATG	3 cut(s)	643, 694, 728
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	134, 391, 583
PfoI	TCCNGGA	2 cut(s)	306, 649
PkrI	GCNGC	8 cut(s)	7, 30, 33, 36, 361, 531, 580, 703
PleI	GAGTC	2 cut(s)	433, 444
PpsI	GAGTC	2 cut(s)	433, 444
Ppu21I	YACGTR	1 cut(s)	401
Psp6I	CCWGG	4 cut(s)	306, 331, 649, 667
PspGI	CCWGG	4 cut(s)	306, 331, 649, 667
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	231
PstI	CTGCAG	2 cut(s)	444, 706
RsaI	GTAC	2 cut(s)	319, 550
RsaNI	GTAC	2 cut(s)	318, 549
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	8 cut(s)	6, 29, 32, 35, 360, 530, 579, 702
Sau3AI	GATC	3 cut(s)	58, 236, 721
Sau96I	GGNCC	1 cut(s)	231
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	2 cut(s)	434, 445
ScrFI	CCNGG	8 cut(s)	84, 114, 308, 333, 558, 606, 651, 669
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	9 cut(s)	226, 233, 334, 346, 361, 403, 525, 550, 592
SfaNI	GCATC	3 cut(s)	81, 364, 621
SfcI	CTRYAG	3 cut(s)	265, 440, 702
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	5 cut(s)	40, 187, 311, 458, 534
SsiI	CCGC	9 cut(s)	29, 32, 35, 110, 144, 153, 280, 529, 621
StyD4I	CCNGG	8 cut(s)	82, 112, 306, 331, 556, 604, 649, 667
TaiI	ACGT	2 cut(s)	226, 403
TaqI	TCGA	4 cut(s)	51, 215, 382, 428
TasI	AATT	5 cut(s)	40, 187, 311, 458, 534
TatI	WGTACW	1 cut(s)	317
TauI	GCSGC	4 cut(s)	31, 34, 37, 532
TfiI	GAWTC	3 cut(s)	134, 391, 583
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	4 cut(s)	5, 359, 578, 701
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	215, 628, 679
TspGWI	ACGGA	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	187
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.