Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Forward (+)

12521734 .. 12524890

Gene Structure 3157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G201500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACGAAACACACACGCAAAACACACACCACCTGTTGCCACCAATCCCCACATCATCATCAAGCACACAGATTCCCCCTCTCTCTCATCCCAAGTGAACCCACCAACCCACGAACGGCGAAGCCTTTCAATTGCCCCCTGTTTGGTTCCGAGGATATCACCAATTCCCAGCCGGAAAACCCCTTTTTTTGTCTTTTCCGGCAGCGTCCAAACATGGTCTCCCCGGAAAACACCAACTGGCTCTTTGATTATGGACTGATCGACGACGCCCCTGTCCTGGATGGGAACTTCCCTGTCTCCTCCTCCGGCTTCACTTGGCCCGTTCAGCCCCTCGCCGGCTCCTCTAGCGTCAGTGTTGAAATTGATGGCTCATTGGGGGATGCAGAGGGAGTTAAGGAATCTGGCTCAAAAAAGAGGGTCAGAACTGAATCATGCAGTGGATCTAGTTCCAAGGCATGCAGGGAGAAGTTGCGAAGGGATAGGCTAAACGACAAGTTTCTCGAATTGGGCTCTATATTAGAGCCTGGAAGGCCCCCCAAGACGGACAAGGCTGCTATATTGGTGGATGCTGTCCGAATGGTGAATCAGTTACGCGGTGAAGCCCAAAAGTTGAAGGACTCAAATTCAAGCCTCCAGGAGAAGATCAAGGAATTGAAGGCAGAGAAGAATGAACTTCGTGATGAGAAGCAGAGGTTGAAGTTAGAGAAAGAGAAGTTGGAGCAGCAACTGAAGGCCATGAATGCACAGCCAGGCTTCTTGCCTCCCCCTCCTGCAATTCCTGCTGCATTTGCTGCCCAAGGCCAAGCTCACGGCAACAAGCTGGTGCCTTTCATTGGATACCCTGGGGTTGCCATGTGGCAGTTCATGCCACCTGCCTCAGTGGATACTTCGCAGGATCATGTACTCCGCCCACCAGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

308

Amino Acids

33.99

Weight (kDa)

8.83

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	880
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	880
AccB1I	GGYRCC	1 cut(s)	823
AccII	CGCG	1 cut(s)	594
AciI	CCGC	2 cut(s)	594, 907
AclWI	GGATC	2 cut(s)	448, 903
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	1 cut(s)	749
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	903
AfiI	CCNNNNNNNGG	6 cut(s)	115, 143, 277, 335, 541, 833
AgsI	TTSAA	6 cut(s)	130, 359, 613, 627, 655, 697
AjnI	CCWGG	5 cut(s)	276, 523, 633, 748, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	698, 730
AluBI	AGCT	2 cut(s)	806, 820
AluI	AGCT	2 cut(s)	806, 820
Alw26I	GTCTC	2 cut(s)	223, 301
AlwI	GGATC	2 cut(s)	448, 903
AlwNI	CAGNNNCTG	1 cut(s)	727
AoxI	GGCC	4 cut(s)	317, 530, 732, 799
ApeKI	GCWGC	5 cut(s)	202, 551, 721, 782, 791
ApoI	RAATTY	1 cut(s)	622
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	318, 531
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	151, 592, 608
BanI	GGYRCC	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	512
BbvI	GCAGC	5 cut(s)	214, 538, 733, 769, 778
BccI	CCATC	2 cut(s)	275, 359
BceAI	ACGGC	2 cut(s)	132, 826
BciT130I	CCWGG	5 cut(s)	278, 525, 635, 750, 843
BciVI	GTATCC	2 cut(s)	830, 877
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	223, 301
BfaI	CTAG	2 cut(s)	345, 444
BfuAI	ACCTGC	1 cut(s)	880
BfuI	GTATCC	2 cut(s)	830, 877
BglI	GCCNNNNNGGC	1 cut(s)	529
BisI	GCNGC	5 cut(s)	203, 552, 722, 783, 792
BlsI	GCNGC	5 cut(s)	204, 553, 723, 784, 793
Bme1390I	CCNGG	6 cut(s)	224, 278, 525, 635, 750, 843
BmgT120I	GGNCC	2 cut(s)	318, 531
BmiI	GGNNCC	4 cut(s)	148, 340, 533, 825
BmrFI	CCNGG	6 cut(s)	224, 278, 525, 635, 750, 843
BmsI	GCATC	2 cut(s)	370, 556
BpmI	CTGGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	6 cut(s)	150, 222, 450, 796, 841, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	6 cut(s)	115, 143, 277, 335, 541, 833
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	242, 914
BseBI	CCWGG	5 cut(s)	278, 525, 635, 750, 843
BseDI	CCNNGG	6 cut(s)	150, 222, 450, 796, 841, 842
BseGI	GGATG	4 cut(s)	87, 286, 385, 571
BseLI	CCNNNNNNNGG	6 cut(s)	115, 143, 277, 335, 541, 833
BseMII	CTCAG	1 cut(s)	891
BseNI	ACTGG	2 cut(s)	242, 914
BseRI	GAGGAG	3 cut(s)	289, 292, 331
BseXI	GCAGC	5 cut(s)	214, 538, 733, 769, 778
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	4 cut(s)	319, 532, 734, 801
BshNI	GGYRCC	1 cut(s)	823
BsiSI	CCGG	5 cut(s)	173, 199, 224, 306, 336
BslI	CCNNNNNNNGG	6 cut(s)	115, 143, 277, 335, 541, 833
BsmAI	GTCTC	2 cut(s)	223, 301
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	4 cut(s)	319, 532, 734, 801
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp143I	GATC	4 cut(s)	258, 440, 642, 895
BspACI	CCGC	2 cut(s)	594, 907
BspANI	GGCC	4 cut(s)	319, 532, 734, 801
BspCNI	CTCAG	1 cut(s)	890
BspFNI	CGCG	1 cut(s)	594
BspLI	GGNNCC	4 cut(s)	148, 340, 533, 825
BspMI	ACCTGC	1 cut(s)	880
BspPI	GGATC	2 cut(s)	448, 903
BspT107I	GGYRCC	1 cut(s)	823
BspTNI	GGTCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	242, 914
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	6 cut(s)	150, 222, 450, 796, 841, 842
BssMI	GATC	4 cut(s)	258, 440, 642, 895
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	450, 796
Bst2UI	CCWGG	5 cut(s)	278, 525, 635, 750, 843
BstACI	GRCGYC	1 cut(s)	267
BstAPI	GCANNNNNTGC	3 cut(s)	779, 791, 865
BstC8I	GCNNGC	2 cut(s)	337, 457
BstDEI	CTNAG	1 cut(s)	877
BstF5I	GGATG	4 cut(s)	87, 286, 385, 571
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	4 cut(s)	261, 443, 645, 898
BstMAI	GTCTC	2 cut(s)	223, 301
BstMBI	GATC	4 cut(s)	258, 440, 642, 895
BstMWI	GCNNNNNNNGC	8 cut(s)	325, 345, 529, 740, 779, 788, 791, 865
BstNI	CCWGG	5 cut(s)	278, 525, 635, 750, 843
BstNSI	RCATGY	1 cut(s)	459
BstSCI	CCNGG	6 cut(s)	222, 276, 523, 633, 748, 841
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	5 cut(s)	214, 538, 733, 769, 778
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuI	GTATCC	2 cut(s)	830, 877
BsuRI	GGCC	4 cut(s)	319, 532, 734, 801
BtsCI	GGATG	4 cut(s)	87, 286, 385, 571
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	3 cut(s)	358, 442, 885
BveI	ACCTGC	1 cut(s)	880
Cac8I	GCNNGC	2 cut(s)	337, 457
CaiI	CAGNNNCTG	1 cut(s)	727
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	318, 531
CseI	GACGC	3 cut(s)	194, 275, 337
Csp6I	GTAC	1 cut(s)	902
CviAII	CATG	7 cut(s)	214, 432, 456, 736, 853, 865, 899
CviQI	GTAC	1 cut(s)	902
DdeI	CTNAG	1 cut(s)	877
DpnI	GATC	4 cut(s)	260, 442, 644, 897
DpnII	GATC	4 cut(s)	258, 440, 642, 895
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	896
Eco130I	CCWWGG	2 cut(s)	450, 796
Eco24I	GRGCYC	1 cut(s)	512
Eco31I	GGTCTC	1 cut(s)	223
Eco32I	GATATC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	531
EcoRII	CCWGG	5 cut(s)	276, 523, 633, 748, 841
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	2 cut(s)	450, 796
EcoT38I	GRGCYC	1 cut(s)	512
ErhI	CCWWGG	2 cut(s)	450, 796
FaeI	CATG	7 cut(s)	217, 435, 459, 739, 856, 868, 902
FatI	CATG	7 cut(s)	213, 431, 455, 735, 852, 864, 898
Fnu4HI	GCNGC	5 cut(s)	203, 552, 722, 783, 792
FokI	GGATG	4 cut(s)	74, 293, 392, 578
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	5 cut(s)	203, 552, 722, 783, 792
FspBI	CTAG	2 cut(s)	345, 444
GluI	GCNGC	5 cut(s)	203, 552, 722, 783, 792
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	4 cut(s)	319, 532, 734, 801
HapII	CCGG	5 cut(s)	173, 199, 224, 306, 336
HgaI	GACGC	3 cut(s)	194, 275, 337
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	7 cut(s)	217, 435, 459, 739, 856, 868, 902
HinfI	GANTC	5 cut(s)	72, 398, 428, 583, 617
HpaII	CCGG	5 cut(s)	173, 199, 224, 306, 336
HphI	GGTGA	3 cut(s)	151, 592, 608
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	151, 422, 575
Hpy188III	TCNNGA	2 cut(s)	500, 677
Hpy8I	GTNNAC	1 cut(s)	98
Hpy99I	CGWCG	2 cut(s)	266, 269
HpyAV	CCTTC	5 cut(s)	468, 522, 607, 649, 724
HpyCH4V	TGCA	6 cut(s)	383, 435, 459, 743, 773, 785
HpyF10VI	GCNNNNNNNGC	8 cut(s)	325, 345, 529, 740, 779, 788, 791, 865
HpyF3I	CTNAG	1 cut(s)	877
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	7 cut(s)	217, 435, 459, 739, 856, 868, 902
KroI	GCCGGC	1 cut(s)	335
KroNI	GCCGGC	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	258, 440, 642, 895
LmnI	GCTCC	2 cut(s)	344, 718
Lsp1109I	GCAGC	5 cut(s)	214, 538, 733, 769, 778
LweI	GCATC	2 cut(s)	370, 556
MaeI	CTAG	2 cut(s)	345, 444
MaeIII	GTNAC	1 cut(s)	588
MalI	GATC	4 cut(s)	260, 442, 644, 897
MboI	GATC	4 cut(s)	258, 440, 642, 895
MboII	GAAGA	2 cut(s)	652, 676
MfeI	CAATTG	1 cut(s)	130
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	7 cut(s)	130, 163, 360, 503, 622, 650, 774
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	696
MroNI	GCCGGC	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	2 cut(s)	393, 922
MspI	CCGG	5 cut(s)	173, 199, 224, 306, 336
MspR9I	CCNGG	6 cut(s)	224, 278, 525, 635, 750, 843
MunI	CAATTG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	5 cut(s)	278, 525, 635, 750, 843
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	8 cut(s)	325, 345, 529, 740, 779, 788, 791, 865
NaeI	GCCGGC	1 cut(s)	337
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	4 cut(s)	258, 440, 642, 895
NgoMIV	GCCGGC	1 cut(s)	335
NlaIII	CATG	7 cut(s)	217, 435, 459, 739, 856, 868, 902
NlaIV	GGNNCC	4 cut(s)	148, 340, 533, 825
NspI	RCATGY	1 cut(s)	459
PaeI	GCATGC	1 cut(s)	459
PaqCI	CACCTGC	1 cut(s)	880
PasI	CCCWGGG	1 cut(s)	842
PctI	GAATGC	1 cut(s)	745
PdiI	GCCGGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	4 cut(s)	72, 398, 428, 583
PfoI	TCCNGGA	2 cut(s)	276, 633
PkrI	GCNGC	5 cut(s)	204, 553, 723, 784, 793
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
Psp6I	CCWGG	5 cut(s)	276, 523, 633, 748, 841
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	5 cut(s)	276, 523, 633, 748, 841
PspN4I	GGNNCC	4 cut(s)	148, 340, 533, 825
PspPI	GGNCC	2 cut(s)	318, 531
PstNI	CAGNNNCTG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	1 cut(s)	903
RsaNI	GTAC	1 cut(s)	902
SaqAI	TTAA	2 cut(s)	393, 922
SatI	GCNGC	5 cut(s)	203, 552, 722, 783, 792
Sau3AI	GATC	4 cut(s)	258, 440, 642, 895
Sau96I	GGNCC	2 cut(s)	318, 531
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	6 cut(s)	224, 278, 525, 635, 750, 843
SduI	GDGCHC	1 cut(s)	512
SetI	ASST	5 cut(s)	35, 695, 808, 822, 874
SfaNI	GCATC	2 cut(s)	370, 556
SphI	GCATGC	1 cut(s)	459
Sse9I	AATT	7 cut(s)	130, 163, 360, 503, 622, 650, 774
SsiI	CCGC	2 cut(s)	594, 907
SspMI	CTAG	2 cut(s)	345, 444
StyD4I	CCNGG	6 cut(s)	222, 276, 523, 633, 748, 841
StyI	CCWWGG	2 cut(s)	450, 796
TaqI	TCGA	2 cut(s)	261, 501
TasI	AATT	7 cut(s)	130, 163, 360, 503, 622, 650, 774
TatI	WGTACW	1 cut(s)	901
TfiI	GAWTC	4 cut(s)	72, 398, 428, 583
Tru1I	TTAA	2 cut(s)	393, 922
Tru9I	TTAA	2 cut(s)	393, 922
TscAI	CASTG	3 cut(s)	358, 442, 885
TseI	GCWGC	5 cut(s)	202, 551, 721, 782, 791
TspDTI	ATGAA	4 cut(s)	684, 752, 820, 853
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	3 cut(s)	358, 442, 885
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	345, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.