MD05G1336600.v1.1

Transcription factor ILR3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003582
Physical Location & Seq
Forward (+)
45857186 .. 45858151
966 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1336600.v1.1.491

Sequence Viewer

Length: 507 bp
ATGCTCAAAGATCTCTCCGTGTCGTTCTCACTCTTTCTTACTCTCTTTCTCATCTTGACTTTTCGCATAATCCTAAGGTTTGCGGAATTGAGTTCTATCCTTGAACCTGGAAGGCCACCCAAAACTGACAAGGTTGCTATACTGGGCGATGCTGTTCGAATGGTAACTCAGTTACGTGGGGAAGCCCAACAACTAAAGGAGTCAAGTGCAAATCTGCAGGAGACGATAAATGAGTTGAAGGCTGAGAAGAATGAACTTCGTGATGAGAAGCAGAGGCTGAAAGCGGAGAAAGACAACATCGAGCGTCAGATTAAAGCCTTGGGTACTCAACCAAGCTTCCTTCCTCACCCTGCTGCAATCCCAACTCCGTTTTCTGCCCCGGGCCAAGTTGTTGGCGGGAAAATGATGCCCTTCGTCGGGTACCCTGGAATGTCCATGTGGCAGTTCATGCCACCAGCTGCAGTTGATACCTCACAGGACCATGTTCTCCGCCCTCCTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

169

Amino Acids

18.67

Weight (kDa)

8.96

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 420
AciI CCGC 4 cut(s) 83, 284, 396, 490
AfaI GTAC 2 cut(s) 325, 422
AfiI CCNNNNNNNGG 2 cut(s) 416, 417
AgsI TTSAA 2 cut(s) 104, 238
AjnI CCWGG 2 cut(s) 106, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 2 cut(s) 336, 458
AluI AGCT 2 cut(s) 336, 458
Alw26I GTCTC 1 cut(s) 215
AlwNI CAGNNNCTG 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 379
AoxI GGCC 2 cut(s) 113, 382
ApeKI GCWGC 2 cut(s) 353, 458
Asp718I GGTACC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 382, 478
AsuC2I CCSGG 2 cut(s) 380, 381
AsuHPI GGTGA 1 cut(s) 338
AsuII TTCGAA 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 379
AvaII GGWCC 1 cut(s) 478
AxyI CCTNAGG 1 cut(s) 74
BanI GGYRCC 1 cut(s) 420
BbvI GCAGC 2 cut(s) 340, 445
BciT130I CCWGG 2 cut(s) 108, 426
BcnI CCSGG 2 cut(s) 380, 381
BcoDI GTCTC 1 cut(s) 215
BfmI CTRYAG 2 cut(s) 215, 459
BglII AGATCT 1 cut(s) 10
BisI GCNGC 2 cut(s) 354, 459
BlsI GCNGC 2 cut(s) 355, 460
Bme1390I CCNGG 4 cut(s) 108, 380, 381, 426
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 382, 478
BmiI GGNNCC 1 cut(s) 422
BmrFI CCNGG 4 cut(s) 108, 380, 381, 426
BmrI ACTGGG 1 cut(s) 152
BmsI GCATC 2 cut(s) 139, 396
BmuI ACTGGG 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 157
BpuMI CCSGG 2 cut(s) 380, 381
BsaAI YACGTR 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 318, 378, 379, 424
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 417
Bse1I ACTGG 1 cut(s) 147
Bse21I CCTNAGG 1 cut(s) 74
BseBI CCWGG 2 cut(s) 108, 426
BseDI CCNNGG 4 cut(s) 318, 378, 379, 424
BseLI CCNNNNNNNGG 2 cut(s) 416, 417
BseMII CTCAG 2 cut(s) 182, 234
BseNI ACTGG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 340, 445
BshFI GGCC 2 cut(s) 115, 384
BshNI GGYRCC 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 416, 417
BsmAI GTCTC 1 cut(s) 215
BsmBI CGTCTC 1 cut(s) 215
BsnI GGCC 2 cut(s) 115, 384
BsoBI CYCGRG 1 cut(s) 379
Bsp119I TTCGAA 1 cut(s) 157
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 4 cut(s) 83, 284, 396, 490
BspANI GGCC 2 cut(s) 115, 384
BspCNI CTCAG 2 cut(s) 181, 235
BspLI GGNNCC 1 cut(s) 422
BspMAI CTGCAG 2 cut(s) 219, 463
BspT104I TTCGAA 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 420
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 4 cut(s) 318, 378, 379, 424
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 108, 426
BstAPI GCANNNNNTGC 1 cut(s) 448
BstBAI YACGTR 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 157
BstDEI CTNAG 3 cut(s) 74, 168, 243
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 2 cut(s) 108, 426
BstSCI CCNGG 4 cut(s) 106, 378, 379, 424
BstSFI CTRYAG 2 cut(s) 215, 459
BstV1I GCAGC 2 cut(s) 340, 445
BstX2I RGATCY 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 1 cut(s) 10
Bsu36I CCTNAGG 1 cut(s) 74
BsuRI GGCC 2 cut(s) 115, 384
BtgZI GCGATG 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 382, 478
Cfr9I CCCGGG 1 cut(s) 379
CseI GACGC 1 cut(s) 293
Csp6I GTAC 2 cut(s) 324, 421
CviAII CATG 3 cut(s) 436, 448, 482
CviJI RGCY 8 cut(s) 115, 185, 242, 277, 317, 336, 384, 458
CviKI_1 RGCY 8 cut(s) 115, 185, 242, 277, 317, 336, 384, 458
CviQI GTAC 2 cut(s) 324, 421
DdeI CTNAG 3 cut(s) 74, 168, 243
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 478
Eco81I CCTNAGG 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 106, 424
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 3 cut(s) 439, 451, 485
FaiI YATR 5 cut(s) 68, 140, 437, 449, 483
FatI CATG 3 cut(s) 435, 447, 481
FauI CCCGC 1 cut(s) 389
Fnu4HI GCNGC 2 cut(s) 354, 459
Fsp4HI GCNGC 2 cut(s) 354, 459
GluI GCNGC 2 cut(s) 354, 459
HaeIII GGCC 2 cut(s) 115, 384
HapII CCGG 1 cut(s) 380
HgaI GACGC 1 cut(s) 293
Hin1II CATG 3 cut(s) 439, 451, 485
HindIII AAGCTT 1 cut(s) 334
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 380
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 2 cut(s) 55, 260
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 4 cut(s) 105, 232, 350, 421
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 209, 217, 356, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 3 cut(s) 74, 168, 243
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 3 cut(s) 439, 451, 485
KpnI GGTACC 1 cut(s) 424
Kzo9I GATC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 340, 445
LweI GCATC 2 cut(s) 139, 396
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 2 cut(s) 163, 171
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 259
MflI RGATCY 1 cut(s) 10
MluCI AATT 1 cut(s) 86
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 4 cut(s) 267, 354, 481, 504
MseI TTAA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 4 cut(s) 108, 380, 381, 426
MvaI CCWGG 2 cut(s) 108, 426
MwoI GCNNNNNNNGC 1 cut(s) 448
NciI CCSGG 2 cut(s) 380, 381
NdeII GATC 1 cut(s) 10
NlaIII CATG 3 cut(s) 439, 451, 485
NlaIV GGNNCC 1 cut(s) 422
NspV TTCGAA 1 cut(s) 157
PkrI GCNGC 2 cut(s) 355, 460
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 106, 424
PspGI CCWGG 2 cut(s) 106, 424
PspN4I GGNNCC 1 cut(s) 422
PspPI GGNCC 2 cut(s) 382, 478
PstI CTGCAG 2 cut(s) 219, 463
PstNI CAGNNNCTG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 325, 422
RsaNI GTAC 2 cut(s) 324, 421
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 354, 459
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 2 cut(s) 382, 478
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 4 cut(s) 108, 380, 381, 426
SetI ASST 7 cut(s) 80, 109, 135, 178, 338, 460, 473
SfaNI GCATC 2 cut(s) 139, 396
SfcI CTRYAG 2 cut(s) 215, 459
SfuI TTCGAA 1 cut(s) 157
SinI GGWCC 1 cut(s) 478
SmaI CCCGGG 1 cut(s) 381
Sse9I AATT 1 cut(s) 86
SsiI CCGC 4 cut(s) 83, 284, 396, 490
StyD4I CCNGG 4 cut(s) 106, 378, 379, 424
StyI CCWWGG 1 cut(s) 318
TaiI ACGT 1 cut(s) 178
TaqI TCGA 2 cut(s) 157, 300
TasI AATT 1 cut(s) 86
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseI GCWGC 2 cut(s) 353, 458
TspDTI ATGAA 2 cut(s) 267, 436
TspGWI ACGGA 2 cut(s) 7, 357
TspMI CCCGGG 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 478
XmaI CCCGGG 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.