Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Forward (+)

27657802 .. 27658274

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTAACTCAGTTACGCGGGGAAGCCCAACAACTAAAGGAGTCAAGAGCGAATCTGCAGGAGACAGTAAATGAATTGAAGGCTGAGAAAAATGAACTTCGTGATGAGAAGCAGAGGCTCAAAGCAGAGAAAGAAAACATTGAGCGGCAAATGAAAGCGTTGGGTACTCAACCAAGCTTCTTGCCTCACCCTGCTGCAATTCCAACTCCGTTTTCTGCCCCGGGCCAAGTTGTTGGCGGGAAAATGATGCCCTTCGTCGGATACCCTGGAATGTCCATGTGGCAGTTCATGCCACCGGCTGCAGTTGATACCTCACAGGACCATGTTCTCCGCCCTCCCGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

116

Amino Acids

12.81

Weight (kDa)

8.05

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	145
AccII	CGCG	1 cut(s)	18
AciI	CCGC	4 cut(s)	18, 145, 237, 331
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	196, 228
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	194, 299
AspS9I	GGNCC	2 cut(s)	223, 319
AsuC2I	CCSGG	2 cut(s)	221, 222
AsuHPI	GGTGA	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	181, 286
BciT130I	CCWGG	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	254
BcnI	CCSGG	2 cut(s)	221, 222
BcoDI	GTCTC	1 cut(s)	56
BfmI	CTRYAG	2 cut(s)	56, 300
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	3 cut(s)	146, 195, 300
BlsI	GCNGC	3 cut(s)	147, 196, 301
Bme1390I	CCNGG	3 cut(s)	221, 222, 267
Bme18I	GGWCC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	223, 319
BmrFI	CCNGG	3 cut(s)	221, 222, 267
BmsI	GCATC	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	221, 222
BsaJI	CCNNGG	3 cut(s)	219, 220, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	219, 220, 265
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	2 cut(s)	23, 75
BseXI	GCAGC	2 cut(s)	181, 286
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	221, 296
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	220
BspACI	CCGC	4 cut(s)	18, 145, 237, 331
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	22, 76
BspFNI	CGCG	1 cut(s)	18
BspMAI	CTGCAG	2 cut(s)	60, 304
BsrBI	CCGCTC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	219, 220, 265
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstDEI	CTNAG	2 cut(s)	9, 84
BstFNI	CGCG	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	3 cut(s)	219, 220, 265
BstSFI	CTRYAG	2 cut(s)	56, 300
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	181, 286
BstXI	CCANNNNNNTGG	1 cut(s)	233
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	223, 319
Cfr9I	CCCGGG	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	3 cut(s)	277, 289, 323
CviJI	RGCY	6 cut(s)	26, 83, 118, 177, 225, 299
CviKI_1	RGCY	6 cut(s)	26, 83, 118, 177, 225, 299
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	9, 84
EciI	GGCGGA	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	319
Eco88I	CYCGRG	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	265
FaeI	CATG	3 cut(s)	280, 292, 326
FaiI	YATR	3 cut(s)	278, 290, 324
FatI	CATG	3 cut(s)	276, 288, 322
FauI	CCCGC	2 cut(s)	11, 230
Fnu4HI	GCNGC	3 cut(s)	146, 195, 300
Fsp4HI	GCNGC	3 cut(s)	146, 195, 300
GluI	GCNGC	3 cut(s)	146, 195, 300
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	2 cut(s)	221, 296
Hin1II	CATG	3 cut(s)	280, 292, 326
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	2 cut(s)	41, 52
HpaII	CCGG	2 cut(s)	221, 296
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	2 cut(s)	45, 101
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	73, 262
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	58, 197, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	2 cut(s)	9, 84
Hsp92II	CATG	3 cut(s)	280, 292, 326
LpnPI	CCDG	7 cut(s)	44, 204, 234, 252, 279, 302, 309
Lsp1109I	GCAGC	2 cut(s)	181, 286
LweI	GCATC	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	4, 12
MbiI	CCGCTC	1 cut(s)	145
MluCI	AATT	2 cut(s)	74, 198
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	227, 238
MnlI	CCTC	4 cut(s)	108, 195, 322, 345
MspI	CCGG	2 cut(s)	221, 296
MspR9I	CCNGG	3 cut(s)	221, 222, 267
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	289
NciI	CCSGG	2 cut(s)	221, 222
NlaIII	CATG	3 cut(s)	280, 292, 326
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	147, 196, 301
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspPI	GGNCC	2 cut(s)	223, 319
PstI	CTGCAG	2 cut(s)	60, 304
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SatI	GCNGC	3 cut(s)	146, 195, 300
Sau96I	GGNCC	2 cut(s)	223, 319
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	3 cut(s)	221, 222, 267
SetI	ASST	2 cut(s)	179, 314
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	2 cut(s)	56, 300
SinI	GGWCC	1 cut(s)	319
SmaI	CCCGGG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	74, 198
SsiI	CCGC	4 cut(s)	18, 145, 237, 331
StyD4I	CCNGG	3 cut(s)	219, 220, 265
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	2 cut(s)	74, 198
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	194, 299
TspDTI	ATGAA	4 cut(s)	87, 108, 167, 277
TspGWI	ACGGA	1 cut(s)	198
TspMI	CCCGGG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	319
XmaI	CCCGGG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.