Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Forward (+)

32509408 .. 32513269

Gene Structure 3862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG253200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTCTCCCCGGAAAACACCAACTGGCTCTACGATTACGGTCTCATGGACGACGCCAACTTCCCCGTCTCCTCCTCCGCCTTCAACTGGCCCGTTCAGCCCAACATCCCCGGCTCCTCTAGCGTCAGTGTTGAACTTGATGGCTCATTGGGGGATGTAGAGGGACTCAAGGAATCTGGCTCAAAAAAGAGGGTAAGATCTGAATCATCCAGTGCATGTAGCTCCAAGGCATGTAGGGAGAAGTTGCGGAGGGATAGGCTGAACGACAAGTTTGTGGAATTGGGCTCTATATTGGAGCCTGGAAGGCCACCCAAGACGGACAAGGCTGCTATTTTGATTGATGCTGTCCGAATGGTGAATCAGTTACGTGGTGAAGCCCAGAAGTTGAAGGACTCAAATTCAAGCCTCCAGGAGAAGATCAAGGAATTGAAGACAGAGAAGACTGAGCTTCGTGATGAGAAGCAGAGGCTGAAATCAGAGAAGGAGAAGTTGGAGCAGCAACTGAAGGCAATGACTGCACAGCCGAGCTTCATGCCAGCCCCTCCTGCAATTCCTGCTGCATTTGCTGCTCAAGGCCAAGCCCATGCCCATGGCAACAAGATGGTGCCTTTCATTGGTTACCCTGGGGTTGCCATGTGGCAGTTCATGCCACCTGCTGCAGTGGATACATCCCAGGATCATGTACTCCGCCCACCAGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

234

Amino Acids

25.73

Weight (kDa)

8.44

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	75 - 123	1.6e-09	Helix-loop-helix DNA-binding domain
bHLH_IRO3	PF23177	76 - 140	2e-10	Iron-related transcription factor 3 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
Acc36I	ACCTGC	1 cut(s)	661
AccB1I	GGYRCC	1 cut(s)	604
AciI	CCGC	3 cut(s)	78, 247, 688
AclWI	GGATC	1 cut(s)	684
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	2 cut(s)	87, 614
AgsI	TTSAA	5 cut(s)	85, 134, 388, 402, 430
AjnI	CCWGG	4 cut(s)	298, 408, 622, 672
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	3 cut(s)	222, 448, 528
AluI	AGCT	3 cut(s)	222, 448, 528
Alw26I	GTCTC	3 cut(s)	10, 47, 73
AlwI	GGATC	1 cut(s)	684
AlwNI	CAGNNNCTG	2 cut(s)	469, 502
AoxI	GGCC	3 cut(s)	89, 305, 574
ApeKI	GCWGC	5 cut(s)	326, 496, 557, 566, 656
ApoI	RAATTY	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	90
AsuC2I	CCSGG	2 cut(s)	11, 111
AsuHPI	GGTGA	2 cut(s)	367, 383
BanI	GGYRCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	437, 446
BbvI	GCAGC	5 cut(s)	313, 508, 544, 553, 643
BccI	CCATC	2 cut(s)	134, 595
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BciT130I	CCWGG	4 cut(s)	300, 410, 624, 674
BciVI	GTATCC	1 cut(s)	658
BcnI	CCSGG	2 cut(s)	11, 111
BcoDI	GTCTC	3 cut(s)	10, 47, 73
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	657
BfuAI	ACCTGC	1 cut(s)	661
BfuI	GTATCC	1 cut(s)	658
BglI	GCCNNNNNGGC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	5 cut(s)	327, 497, 558, 567, 657
BlsI	GCNGC	5 cut(s)	328, 498, 559, 568, 658
Bme1390I	CCNGG	6 cut(s)	11, 111, 300, 410, 624, 674
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	3 cut(s)	115, 297, 606
BmrFI	CCNGG	6 cut(s)	11, 111, 300, 410, 624, 674
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	437, 446
BpmI	CTGGAG	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	152, 555
BpuMI	CCSGG	2 cut(s)	11, 111
BsaAI	YACGTR	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	2 cut(s)	10, 47
BsaJI	CCNNGG	7 cut(s)	9, 109, 225, 589, 622, 623, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 614
Bse1I	ACTGG	4 cut(s)	29, 92, 210, 695
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	202
BseBI	CCWGG	4 cut(s)	300, 410, 624, 674
BseDI	CCNNGG	7 cut(s)	9, 109, 225, 589, 622, 623, 672
BseGI	GGATG	4 cut(s)	105, 160, 206, 668
BseJI	GATNNNNATC	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	87, 614
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	4 cut(s)	29, 92, 210, 695
BseRI	GAGGAG	3 cut(s)	61, 64, 106
BseXI	GCAGC	5 cut(s)	313, 508, 544, 553, 643
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	3 cut(s)	91, 307, 576
BshNI	GGYRCC	1 cut(s)	604
BsiSI	CCGG	2 cut(s)	11, 111
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	87, 614
BsmAI	GTCTC	3 cut(s)	10, 47, 73
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	91, 307, 576
Bso31I	GGTCTC	2 cut(s)	10, 47
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	197, 417, 676
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	3 cut(s)	78, 247, 688
BspANI	GGCC	3 cut(s)	91, 307, 576
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	115, 297, 606
BspMAI	CTGCAG	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	1 cut(s)	684
BspT107I	GGYRCC	1 cut(s)	604
BspTNI	GGTCTC	2 cut(s)	10, 47
BsrDI	GCAATG	1 cut(s)	516
BsrI	ACTGG	4 cut(s)	29, 92, 210, 695
BssECI	CCNNGG	7 cut(s)	9, 109, 225, 589, 622, 623, 672
BssMI	GATC	3 cut(s)	197, 417, 676
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	2 cut(s)	225, 589
Bst2UI	CCWGG	4 cut(s)	300, 410, 624, 674
Bst4CI	ACNGT	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	4 cut(s)	515, 554, 566, 646
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	1 cut(s)	589
BstEII	GGTNACC	1 cut(s)	617
BstF5I	GGATG	4 cut(s)	105, 160, 206, 668
BstKTI	GATC	3 cut(s)	200, 420, 679
BstMAI	GTCTC	3 cut(s)	10, 47, 73
BstMBI	GATC	3 cut(s)	197, 417, 676
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 120, 304, 515, 545, 554, 563, 566, 646
BstNI	CCWGG	4 cut(s)	300, 410, 624, 674
BstNSI	RCATGY	2 cut(s)	219, 234
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	6 cut(s)	9, 109, 298, 408, 622, 672
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	5 cut(s)	313, 508, 544, 553, 643
BstV2I	GAAGAC	2 cut(s)	437, 446
BstX2I	RGATCY	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	3 cut(s)	91, 307, 576
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	105, 160, 206, 668
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	3 cut(s)	133, 217, 666
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	537
CaiI	CAGNNNCTG	2 cut(s)	469, 502
Cfr13I	GGNCC	1 cut(s)	90
CseI	GACGC	2 cut(s)	62, 112
Csp6I	GTAC	1 cut(s)	683
CviAII	CATG	9 cut(s)	46, 216, 231, 532, 584, 590, 634, 646, 680
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	3 cut(s)	199, 419, 678
DpnII	GATC	3 cut(s)	197, 417, 676
EciI	GGCGGA	2 cut(s)	67, 677
Eco130I	CCWWGG	2 cut(s)	225, 589
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	2 cut(s)	10, 47
Eco57I	CTGAAG	1 cut(s)	524
Eco91I	GGTNACC	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	617
EcoRII	CCWGG	4 cut(s)	298, 408, 622, 672
EcoT14I	CCWWGG	2 cut(s)	225, 589
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	2 cut(s)	225, 589
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	9 cut(s)	49, 219, 234, 535, 587, 593, 637, 649, 683
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	9 cut(s)	45, 215, 230, 531, 583, 589, 633, 645, 679
Fnu4HI	GCNGC	5 cut(s)	327, 497, 558, 567, 657
FokI	GGATG	4 cut(s)	92, 167, 193, 655
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	5 cut(s)	327, 497, 558, 567, 657
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	5 cut(s)	327, 497, 558, 567, 657
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	91, 307, 576
HapII	CCGG	2 cut(s)	11, 111
HgaI	GACGC	2 cut(s)	62, 112
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	9 cut(s)	49, 219, 234, 535, 587, 593, 637, 649, 683
HinfI	GANTC	5 cut(s)	165, 173, 203, 358, 392
HpaII	CCGG	2 cut(s)	11, 111
HphI	GGTGA	2 cut(s)	367, 383
Hpy188I	TCNGA	3 cut(s)	202, 350, 478
Hpy188III	TCNNGA	1 cut(s)	452
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	5 cut(s)	91, 297, 382, 475, 499
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	5 cut(s)	215, 518, 548, 560, 659
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 120, 304, 515, 545, 554, 563, 566, 646
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	1 cut(s)	367
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	9 cut(s)	49, 219, 234, 535, 587, 593, 637, 649, 683
Kzo9I	GATC	3 cut(s)	197, 417, 676
LmnI	GCTCC	4 cut(s)	119, 227, 295, 493
Lsp1109I	GCAGC	5 cut(s)	313, 508, 544, 553, 643
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	363, 617
MalI	GATC	3 cut(s)	199, 419, 678
MboI	GATC	3 cut(s)	197, 417, 676
MboII	GAAGA	3 cut(s)	427, 442, 451
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	4 cut(s)	278, 397, 425, 549
MlyI	GAGTC	2 cut(s)	159, 386
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	9 cut(s)	82, 85, 127, 154, 183, 243, 416, 459, 552
MseI	TTAA	1 cut(s)	703
MslI	CAYNNNNRTG	1 cut(s)	588
MspI	CCGG	2 cut(s)	11, 111
MspR9I	CCNGG	6 cut(s)	11, 111, 300, 410, 624, 674
MvaI	CCWGG	4 cut(s)	300, 410, 624, 674
MwoI	GCNNNNNNNGC	9 cut(s)	97, 120, 304, 515, 545, 554, 563, 566, 646
NciI	CCSGG	2 cut(s)	11, 111
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	197, 417, 676
NlaIII	CATG	9 cut(s)	49, 219, 234, 535, 587, 593, 637, 649, 683
NlaIV	GGNNCC	3 cut(s)	115, 297, 606
NmeAIII	GCCGAG	1 cut(s)	549
NspI	RCATGY	2 cut(s)	219, 234
PaqCI	CACCTGC	1 cut(s)	661
PasI	CCCWGGG	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	173, 203, 358
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	5 cut(s)	328, 498, 559, 568, 658
PleI	GAGTC	2 cut(s)	159, 386
PpsI	GAGTC	2 cut(s)	159, 386
Ppu21I	YACGTR	1 cut(s)	368
Psp6I	CCWGG	4 cut(s)	298, 408, 622, 672
PspEI	GGTNACC	1 cut(s)	617
PspGI	CCWGG	4 cut(s)	298, 408, 622, 672
PspN4I	GGNNCC	3 cut(s)	115, 297, 606
PspPI	GGNCC	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	2 cut(s)	469, 502
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
RseI	CAYNNNNRTG	1 cut(s)	588
SaqAI	TTAA	1 cut(s)	703
SatI	GCNGC	5 cut(s)	327, 497, 558, 567, 657
Sau3AI	GATC	3 cut(s)	197, 417, 676
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	2 cut(s)	159, 386
ScrFI	CCNGG	6 cut(s)	11, 111, 300, 410, 624, 674
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	5 cut(s)	224, 370, 450, 530, 655
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	657
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	2 cut(s)	167, 570
SmoI	CTYRAG	2 cut(s)	167, 570
Sse9I	AATT	4 cut(s)	278, 397, 425, 549
SsiI	CCGC	3 cut(s)	78, 247, 688
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	6 cut(s)	9, 109, 298, 408, 622, 672
StyI	CCWWGG	2 cut(s)	225, 589
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	1 cut(s)	370
TasI	AATT	4 cut(s)	278, 397, 425, 549
TatI	WGTACW	1 cut(s)	682
TfiI	GAWTC	3 cut(s)	173, 203, 358
Tru1I	TTAA	1 cut(s)	703
Tru9I	TTAA	1 cut(s)	703
TscAI	CASTG	3 cut(s)	133, 217, 666
TseI	GCWGC	5 cut(s)	326, 496, 557, 566, 656
TspDTI	ATGAA	3 cut(s)	520, 601, 634
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	3 cut(s)	133, 217, 666
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	2 cut(s)	219, 234
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.