Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Reverse (-)

1352386 .. 1355330

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G029000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGTTCGCCGCCGCAAAATCACAACTGGGTCTTCGATTATGGAGTTTTAGAAGATATTCCTGTACCTGGCGGTGACCTACCGCCCCTTGACCTGCCCGGTTTCACTTGGCCGTCTCATTCATTTGTCGCTCCGGCCGCTCCGAGCGTGGACTTTGATGACTCATTTGGAAATTCAGACAGTATCAAGGAAAGTGGGTTTCGAAAACGGGTGAGGTCTGGATCATGCAATGTGACTGGTTCTAAAGCATGCAGAGAGAAAATGCGGAGGGATAGACTGAACGACAGGTTCCTGGAATTGAGTTCTATGCTTGAACCTGGAAGGCCACCCAAAACTGACAAGGCTGCTATATTGGGTGATGCTGTTCGAGTGGTGAATCAGTTACGCGGAGAAGCCCAGCAACTGAAGGATTCAAATGGAGATCTGCAGGAGAAGATAAATGAATTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAGCAGAGGCTCAAAACAGAGAAAGAGAACATTGAGCGGCAAATTAAAGCCTTGAATACTCAGCCAGGCTTCTTGCCTCACCCTGCTGCAATTCCAGGTCCATTTTCTGCCCCAGGCCAAGTTGTTGGTGGCAAACTGATGCCCTTCGTAGGATATCCTGGAGTTTCCATGTGGCAGTTCATGCCACCAGCTGCAGTTGATACCTCACAAGACCATGTTCTCCGCTCCCCTGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

239

Amino Acids

26.17

Weight (kDa)

6.45

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	102
AccBSI	CCGCTC	3 cut(s)	140, 514, 702
AccII	CGCG	1 cut(s)	387
AciI	CCGC	9 cut(s)	11, 14, 72, 83, 138, 265, 387, 514, 700
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	2 cut(s)	110, 135
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	68, 626
AgsI	TTSAA	3 cut(s)	314, 414, 532
AjnI	CCWGG	7 cut(s)	67, 291, 316, 541, 571, 589, 634
AluBI	AGCT	1 cut(s)	668
AluI	AGCT	1 cut(s)	668
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	403
AoxI	GGCC	4 cut(s)	110, 135, 323, 592
ApeKI	GCWGC	3 cut(s)	344, 563, 668
ApoI	RAATTY	1 cut(s)	172
Asp700I	GAANNNNTTC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	575
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	5 cut(s)	86, 223, 368, 385, 548
AsuII	TTCGAA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	331, 550, 655
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	7 cut(s)	69, 293, 318, 543, 573, 591, 636
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	120
BfmI	CTRYAG	2 cut(s)	425, 669
BfuAI	ACCTGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	7 cut(s)	11, 14, 138, 345, 515, 564, 669
BlsI	GCNGC	7 cut(s)	12, 15, 139, 346, 516, 565, 670
Bme1390I	CCNGG	8 cut(s)	69, 99, 293, 318, 543, 573, 591, 636
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	290
BmrFI	CCNGG	8 cut(s)	69, 99, 293, 318, 543, 573, 591, 636
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	2 cut(s)	349, 606
BmuI	ACTGGG	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	657
Bpu14I	TTCGAA	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 626
Bse1I	ACTGG	2 cut(s)	32, 241
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	7 cut(s)	69, 293, 318, 543, 573, 591, 636
BseDI	CCNNGG	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	68, 626
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	444, 551
BseNI	ACTGG	2 cut(s)	32, 241
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	331, 550, 655
BseYI	CCCAGC	1 cut(s)	396
Bsh1236I	CGCG	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	4 cut(s)	112, 137, 325, 594
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	99, 134
BslI	CCNNNNNNNGG	2 cut(s)	68, 626
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsnI	GGCC	4 cut(s)	112, 137, 325, 594
Bsp119I	TTCGAA	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	221, 421
BspACI	CCGC	9 cut(s)	11, 14, 72, 83, 138, 265, 387, 514, 700
BspANI	GGCC	4 cut(s)	112, 137, 325, 594
BspCNI	CTCAG	2 cut(s)	445, 550
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	290
BspMAI	CTGCAG	2 cut(s)	429, 673
BspMI	ACCTGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	229
BspT104I	TTCGAA	1 cut(s)	202
BsrBI	CCGCTC	3 cut(s)	140, 514, 702
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	32, 241
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	2 cut(s)	221, 421
Bst2UI	CCWGG	7 cut(s)	69, 293, 318, 543, 573, 591, 636
Bst4CI	ACNGT	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	453, 537
BstEII	GGTNACC	1 cut(s)	74
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	2 cut(s)	224, 424
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	221, 421
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 658
BstNI	CCWGG	7 cut(s)	69, 293, 318, 543, 573, 591, 636
BstNSI	RCATGY	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	8 cut(s)	67, 97, 291, 316, 541, 571, 589, 634
BstSFI	CTRYAG	2 cut(s)	425, 669
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	331, 550, 655
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	421
BstXI	CCANNNNNNTGG	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	421
BstZI	CGGCCG	1 cut(s)	135
BsuRI	GGCC	4 cut(s)	112, 137, 325, 594
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	250
CaiI	CAGNNNCTG	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	575
Csp6I	GTAC	1 cut(s)	65
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	6 cut(s)	225, 249, 646, 658, 692, 714
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	2 cut(s)	453, 537
DpnI	GATC	2 cut(s)	223, 423
DpnII	GATC	2 cut(s)	221, 421
EaeI	YGGCCR	2 cut(s)	110, 135
EagI	CGGCCG	1 cut(s)	135
EclXI	CGGCCG	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	575
Eco52I	CGGCCG	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	425
Eco91I	GGTNACC	1 cut(s)	74
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	7 cut(s)	67, 291, 316, 541, 571, 589, 634
EcoRV	GATATC	1 cut(s)	632
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	6 cut(s)	228, 252, 649, 661, 695, 717
FaiI	YATR	9 cut(s)	42, 226, 250, 308, 350, 647, 659, 693, 715
FatI	CATG	6 cut(s)	224, 248, 645, 657, 691, 713
Fnu4HI	GCNGC	7 cut(s)	11, 14, 138, 345, 515, 564, 669
Fsp4HI	GCNGC	7 cut(s)	11, 14, 138, 345, 515, 564, 669
GluI	GCNGC	7 cut(s)	11, 14, 138, 345, 515, 564, 669
GsaI	CCCAGC	1 cut(s)	400
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	4 cut(s)	112, 137, 325, 594
HapII	CCGG	2 cut(s)	99, 134
Hin1II	CATG	6 cut(s)	228, 252, 649, 661, 695, 717
HinfI	GANTC	3 cut(s)	161, 376, 410
HpaII	CCGG	2 cut(s)	99, 134
HphI	GGTGA	5 cut(s)	86, 223, 368, 385, 548
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	144, 178
Hpy188III	TCNNGA	2 cut(s)	219, 470
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	3 cut(s)	315, 400, 631
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	6 cut(s)	228, 252, 427, 566, 671, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 658
HpyF3I	CTNAG	2 cut(s)	453, 537
Hsp92II	CATG	6 cut(s)	228, 252, 649, 661, 695, 717
Kzo9I	GATC	2 cut(s)	221, 421
LmnI	GCTCC	3 cut(s)	136, 145, 707
Lsp1109I	GCAGC	3 cut(s)	331, 550, 655
LweI	GCATC	2 cut(s)	349, 606
MaeIII	GTNAC	3 cut(s)	74, 232, 381
MalI	GATC	2 cut(s)	223, 423
MbiI	CCGCTC	3 cut(s)	140, 514, 702
MboI	GATC	2 cut(s)	221, 421
MboII	GAAGA	4 cut(s)	25, 65, 445, 469
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	5 cut(s)	172, 296, 443, 519, 567
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	5 cut(s)	207, 261, 477, 564, 691
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	2 cut(s)	446, 522
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	2 cut(s)	99, 134
MspR9I	CCNGG	8 cut(s)	69, 99, 293, 318, 543, 573, 591, 636
MvaI	CCWGG	7 cut(s)	69, 293, 318, 543, 573, 591, 636
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	137, 658
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	221, 421
NlaIII	CATG	6 cut(s)	228, 252, 649, 661, 695, 717
NlaIV	GGNNCC	1 cut(s)	290
NmuCI	GTSAC	2 cut(s)	74, 232
NspI	RCATGY	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	202
PaeI	GCATGC	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	376, 410
PfoI	TCCNGGA	2 cut(s)	291, 634
PkrI	GCNGC	7 cut(s)	12, 15, 139, 346, 516, 565, 670
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp6I	CCWGG	7 cut(s)	67, 291, 316, 541, 571, 589, 634
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	396
PspGI	CCWGG	7 cut(s)	67, 291, 316, 541, 571, 589, 634
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	575
PstI	CTGCAG	2 cut(s)	429, 673
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	446, 522
SatI	GCNGC	7 cut(s)	11, 14, 138, 345, 515, 564, 669
Sau3AI	GATC	2 cut(s)	221, 421
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	8 cut(s)	69, 99, 293, 318, 543, 573, 591, 636
SetI	ASST	9 cut(s)	70, 81, 96, 218, 290, 319, 577, 670, 683
SfaNI	GCATC	2 cut(s)	349, 606
SfcI	CTRYAG	2 cut(s)	425, 669
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	1 cut(s)	575
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	5 cut(s)	172, 296, 443, 519, 567
SsiI	CCGC	9 cut(s)	11, 14, 72, 83, 138, 265, 387, 514, 700
StyD4I	CCNGG	8 cut(s)	67, 97, 291, 316, 541, 571, 589, 634
TaaI	ACNGT	1 cut(s)	182
TaqI	TCGA	3 cut(s)	36, 202, 367
TasI	AATT	5 cut(s)	172, 296, 443, 519, 567
TauI	GCSGC	4 cut(s)	13, 16, 140, 517
TfiI	GAWTC	2 cut(s)	376, 410
Tru1I	TTAA	2 cut(s)	446, 522
Tru9I	TTAA	2 cut(s)	446, 522
TseFI	GTSAC	2 cut(s)	74, 232
TseI	GCWGC	3 cut(s)	344, 563, 668
Tsp45I	GTSAC	2 cut(s)	74, 232
TspDTI	ATGAA	4 cut(s)	111, 456, 477, 646
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.