Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003582

Physical Location & Seq

Genomic Coordinates Forward (+)

39657492 .. 39658525

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1312100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTCAATGATCTCTCTGTTTCTCTGTCTGTCTGTTTGTCTGTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCACTGTGTTTTTCATTTTGACATTTTTCGCGTAACTTTAAGGTTCGTGGAATTGAGTTCTATCCTTGAACCTGGAAGGCCACCCAAAACTGACAAGGTTGCAATACTGGGTGATGCTGCTCAAATGGTAACTCAGTTACGCGGGGAAGCCCAACAACTAAAAGAGTCAAGTGCGAATCTGCAGGAGACGATAAATGAATTGAAGGCCGAGAAAAATGAACTTCGTGATGAGAAGCAGAGGCTCAAAGCAGAGAAAGAAAACATTGAGCGGCAAATTAAAGCGTTGGGCACTCAACCAAGCTTCTTGCCTCACCCTGCTGCAATTCCAACTCCGTTTTCTGCCCCGGGCCAAGTTGTTGGCGGGAAAATGATGCCCTTCGTCGGATACCCTGGAATGTCCATGTGGCAGTTCATGCCACCGGCTGCCGTTGATACCTCACAGGACCATGTTCTCCGCCCTCCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

181

Amino Acids

19.79

Weight (kDa)

6.42

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54680
fragaria_vesca	FvH4_3g02910 FvH4_3g02910 FvH4_3g21720
malus_domestica	MD03G1212600.v1.1 MD05G1336500.v1.1 MD05G1336600.v1.1 MD10G1312000.v1.1 MD10G1312100.v1.1 MD11G1227800.v1.1
prunus_persica	Prupe.4G029000_v2.0.a1 Prupe.4G201500_v2.0.a1
pyrus_communis	pycom03g16130 pycom05g30800 pycom10g26330 pycom11g20040
rosa_chinensis	RchiOBHm_Chr5g0004471 RchiOBHm_Chr5g0037201
rosa_laevigata	RLG00000031231 RLG00000033764
rosa_multiflora	Rmu_sc0000433.1_g000001 Rmu_sc0002453.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043770 Rroxscaffold_1G00071050
rosa_rugosa	Rorug04G0412000 Rorug05G0163600
rosa_samantha	Rh5AG039600 Rh5AG253200 Rh5BG038600 Rh5BG255200 Rh5CG042700 Rh5CG287900 Rh5DG038400
rosa_wichuraiana	Rw5G003780 Rw5G023390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	340
AccII	CGCG	2 cut(s)	102, 213
AciI	CCGC	4 cut(s)	213, 340, 432, 526
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	140, 274
AjnI	CCWGG	2 cut(s)	142, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
AluBI	AGCT	1 cut(s)	372
AluI	AGCT	1 cut(s)	372
Alw26I	GTCTC	2 cut(s)	49, 251
Ama87I	CYCGRG	1 cut(s)	415
AoxI	GGCC	3 cut(s)	149, 276, 418
ApeKI	GCWGC	3 cut(s)	188, 389, 494
AspS9I	GGNCC	2 cut(s)	418, 514
AsuC2I	CCSGG	2 cut(s)	416, 417
AsuHPI	GGTGA	2 cut(s)	194, 374
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	514
BaeGI	GKGCMC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	175, 376, 481
BceAI	ACGGC	1 cut(s)	482
BciT130I	CCWGG	2 cut(s)	144, 462
BciVI	GTATCC	1 cut(s)	449
BcnI	CCSGG	2 cut(s)	416, 417
BcoDI	GTCTC	2 cut(s)	49, 251
BfmI	CTRYAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	449
BisI	GCNGC	4 cut(s)	189, 341, 390, 495
BlsI	GCNGC	4 cut(s)	190, 342, 391, 496
Bme1390I	CCNGG	4 cut(s)	144, 416, 417, 462
Bme18I	GGWCC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	418, 514
BmrFI	CCNGG	4 cut(s)	144, 416, 417, 462
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	175, 432
BmuI	ACTGGG	1 cut(s)	188
BpuMI	CCSGG	2 cut(s)	416, 417
BsaJI	CCNNGG	3 cut(s)	414, 415, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse118I	RCCGGY	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	144, 462
BseDI	CCNNGG	3 cut(s)	414, 415, 460
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	175, 376, 481
Bsh1236I	CGCG	2 cut(s)	102, 213
BshFI	GGCC	3 cut(s)	151, 278, 420
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	2 cut(s)	416, 491
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	2 cut(s)	49, 251
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	3 cut(s)	151, 278, 420
BsoBI	CYCGRG	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	4 cut(s)	213, 340, 432, 526
BspANI	GGCC	3 cut(s)	151, 278, 420
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	102, 213
BspMAI	CTGCAG	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	490
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	490
BssECI	CCNNGG	3 cut(s)	414, 415, 460
BssMI	GATC	1 cut(s)	10
Bst2UI	CCWGG	2 cut(s)	144, 462
Bst4CI	ACNGT	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	204
BstFNI	CGCG	2 cut(s)	102, 213
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	2 cut(s)	49, 251
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNI	CCWGG	2 cut(s)	144, 462
BstSCI	CCNGG	4 cut(s)	142, 414, 415, 460
BstSFI	CTRYAG	1 cut(s)	251
BstSLI	GKGCMC	1 cut(s)	362
BstUI	CGCG	2 cut(s)	102, 213
BstV1I	GCAGC	3 cut(s)	175, 376, 481
BstXI	CCANNNNNNTGG	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	449
BsuRI	GGCC	3 cut(s)	151, 278, 420
BtsIMutI	CAGTG	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	490
Cfr13I	GGNCC	2 cut(s)	418, 514
Cfr9I	CCCGGG	1 cut(s)	415
CviAII	CATG	3 cut(s)	472, 484, 518
CviJI	RGCY	7 cut(s)	151, 221, 278, 313, 372, 420, 494
CviKI_1	RGCY	7 cut(s)	151, 221, 278, 313, 372, 420, 494
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EciI	GGCGGA	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	514
Eco88I	CYCGRG	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	142, 460
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	3 cut(s)	475, 487, 521
FaiI	YATR	3 cut(s)	473, 485, 519
FatI	CATG	3 cut(s)	471, 483, 517
FauI	CCCGC	2 cut(s)	206, 425
Fnu4HI	GCNGC	4 cut(s)	189, 341, 390, 495
Fsp4HI	GCNGC	4 cut(s)	189, 341, 390, 495
GluI	GCNGC	4 cut(s)	189, 341, 390, 495
HaeIII	GGCC	3 cut(s)	151, 278, 420
HapII	CCGG	2 cut(s)	416, 491
Hin1II	CATG	3 cut(s)	475, 487, 521
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	2 cut(s)	236, 247
HpaII	CCGG	2 cut(s)	416, 491
HphI	GGTGA	2 cut(s)	194, 374
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	455
HpyAV	CCTTC	3 cut(s)	141, 268, 457
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	3 cut(s)	173, 253, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	475, 487, 521
Kzo9I	GATC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	175, 376, 481
LweI	GCATC	2 cut(s)	175, 432
MaeIII	GTNAC	3 cut(s)	103, 199, 207
MalI	GATC	1 cut(s)	12
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	4 cut(s)	122, 269, 345, 393
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	422, 433
MnlI	CCTC	4 cut(s)	303, 390, 517, 540
MseI	TTAA	2 cut(s)	110, 348
MspI	CCGG	2 cut(s)	416, 491
MspR9I	CCNGG	4 cut(s)	144, 416, 417, 462
MvaI	CCWGG	2 cut(s)	144, 462
MvnI	CGCG	2 cut(s)	102, 213
MwoI	GCNNNNNNNGC	1 cut(s)	484
NciI	CCSGG	2 cut(s)	416, 417
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	475, 487, 521
NmeAIII	GCCGAG	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	190, 342, 391, 496
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	142, 460
PspGI	CCWGG	2 cut(s)	142, 460
PspPI	GGNCC	2 cut(s)	418, 514
PstI	CTGCAG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	110, 348
SatI	GCNGC	4 cut(s)	189, 341, 390, 495
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	2 cut(s)	418, 514
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	4 cut(s)	144, 416, 417, 462
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	5 cut(s)	116, 145, 171, 374, 509
SfaNI	GCATC	2 cut(s)	175, 432
SfcI	CTRYAG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	514
SmaI	CCCGGG	1 cut(s)	417
Sse9I	AATT	4 cut(s)	122, 269, 345, 393
SsiI	CCGC	4 cut(s)	213, 340, 432, 526
StyD4I	CCNGG	4 cut(s)	142, 414, 415, 460
TaaI	ACNGT	1 cut(s)	77
TasI	AATT	4 cut(s)	122, 269, 345, 393
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	110, 348
Tru9I	TTAA	2 cut(s)	110, 348
TscAI	CASTG	1 cut(s)	80
TseI	GCWGC	3 cut(s)	188, 389, 494
TspDTI	ATGAA	4 cut(s)	74, 282, 303, 472
TspGWI	ACGGA	1 cut(s)	393
TspMI	CCCGGG	1 cut(s)	415
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	514
XmaI	CCCGGG	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.