Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001229

Physical Location & Seq

Genomic Coordinates Reverse (-)

3673189 .. 3679584

Gene Structure 6396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06390.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2547 bp

ATGAGTCAGCCTTGGAACTTCTCATCTTCTGGTTCTACTAAAATTCAGCTGGTGGGTGGAGGAGCATGGGGGATTTTATCTGGATCAGCCCACCATGCCTCAAGTGATGCTACCCTTTTCTCTAGCTCATTACCTGTACTTCCACATCCAAAGTTGAACTTGAATGATGTGGAAAATGGCCACCAATCTATTGATGATCTCTCATCTGGCTTAAAAAAATTCCATCAAAATATGGAGGGTAATGATCCAATTGATGATATTGAAAATCATGCAATTGGTAGCTTGCTTCCTGGGGACGAGGAGGAGCTTTTAGCTGGCAAAGCAGATGATCTTGACCTCAGTGGGTTGCCTGGGTCTCTGGAAGATTTGGAAGATTATGATCTCTTTGGTAGTGGAGGTGGCATGGAATTGGAAAGTGATCCACAGGATAGTCTGAGAATTGGGATTTCAAGGGTAAGTTTATCTGATGGTTCTACAGGGAATGGGATGGTTAATTCTGCCGTTTCAAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGCGAGCATCCCTCCAGAACACTATTTGTGCGAAACATCAACAGTAATGTCGAGGATTCAGAACTAAGAGCACTTTTTGAGCAATATGGCGATATTAGAACTCTGTACACTGCATGTAAACACAGGGGCTTTGTGATGATATCTTATTATGATATTCGTGCTGCTCGAACTGCTATGCGCATATTACAGAACAAGCCACTGCGACGGAGGAAACTTGATATTCATTTTTCAATACCGAAGGATAACCCATCAGAAAAGGATGTTAATCAAGGGACCTTGGTAGCTTTTAATTTGGATCCATCAGTTTCAAATGAAGACCTCCTCCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGATAAGGGAAACGCCGCACAAGAGACACCATAAGTTTATCGAGTACTTTGATATCAGAGCTGCAGAAGCAGCACTCAAGTCATTAAATAGGAGTGACATAGCTGGAAAACGCATAAAGTTGGAACCCAGTCGCCCTGGAGGAGCTCGTAAAAACTTGATGTTGCAACTGAATCAAGACCCTGAACAAGATGAATCTCGGAATTATCTACATTCCGTGGGTTCACCTGTAACCAACTCTCCACCAGGTAGCTGGGTGCAGTTCAACAGCCCCACTGAACATAGTCATATGTACGGTATTAGTAAATCCCCTGGTTTCAGGACTATGAGTCCGACAAACAGCAATTATGTGCCTGGACTAGCATCAATTCTGCATCCCCAAGTATCAAACACTCTGAAAGTGGCACCTATTGGTAGTCAAGGAAGGGGGGGTATTTCAAATCATATGTTTACTAATACAAACTCAGCACATGGATCTGCATTTCAACAGTCGCATTCATTTCCGGAGCCAAACTTAAGCCATTTCCATGGAACATTGCACTCCTCTGGACCTTCAACTTCAAGTGGATCATCAGCTGTGGAAACATTATCAGGTCCACAATTTCTTTGGGGAAGTCCGACTCTTGAAAAAACAAATTCTTCTGTTTGGCCTCAGAAAGCAGTGGGACATCAACTTGCATCGAATGGCAAGGGTCATAATCATCCATTCTCAAGTCCTCATAGCTCTTTCCTCAGCTCCTCCCCTCACCATCATCATGTTGGATCTGCTCCATCTGGCATTCCATTTGACAGGCACCTCAGTTATGTCCCAGAGTCACCGGAAACTTCATTTTTGAGTCCTGCCTCCTATGGAAGCATGGGAATAGGCCCCAGGGGTGTGAATTTGAGAATTAATAGGGGCACTCATACTGCTACAAATGTTGGCTTTTCAATACCCGGAAGTGTGCCTGAAAGTAGTTCCTCCAGTTTCAAAATGATGTCCTCACCAAAGCTTAGTCCCATGTTTTTAGGTAATGGGCCATACATGGGACTGCCTCCTACAAGCATTGATGGTTTCACTGAGCGTGGGAGGAGCAGACGAGTTGAGAATAATGGGAACCAAATTGATAGCAGGAAACAGTTTCAACTTGATTTGGATAAGATTATCACCGGGGAAGATAGTAGAACAACATTAATGATAAAAAATATCCCAAATAAGTACACCTCAAAGATGCTACTTGCTGTAATAGATGAAAATCACAAGGGTACCTATGATTTTCTCTATCTTCCAATTGACTTTAAGAATAAGTGCAACGTGGGCTATGCATTTATCAATATGCTGTCTCCCTCACACATCATCCCATTTTATGAGGCATTCAATGGAAAGAAATGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCGTTGGCTTATGGGCGAATCCAAGGGAAGGGAGCTCTTGTGACCCACTTTCAAAATTCAAGCCTAATGAATGAAGACAAACGTTGTCGCCCGATTCTCTTTATCTCAGAGAGTTCAGAGGCTGGTGATCAGATCATCCTGGAACATCTTCCCTCCAATAATTTGAACATCCACGTTTCTCAGCCAAAGGAGTCAGACCTTGGTTCATCAGCAAGCCTGAAGTGTTGCGGGTCTGATGAGAACAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

849

Amino Acids

92.41

Weight (kDa)

6.45

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	189 - 253	2.8e-09	RNA recognition motif
RRM_5	PF13893	272 - 355	1e-05	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	278 - 339	1.4e-10	RNA recognition motif
RRM_2	PF04059	687 - 726	2.3e-18	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29400 AT1G29400 AT1G29400
fragaria_vesca	FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250
malus_domestica	MD05G1291700.v1.1 MD09G1151600.v1.1 MD10G1267700.v1.1 MD17G1139300.v1.1
prunus_persica	Prupe.3G172900_v2.0.a1 Prupe.4G073800_v2.0.a1
pyrus_communis	pycom05g26820 pycom09g07120 pycom10g22380 pycom17g13240
rosa_chinensis	RchiOBHm_Chr2g0151511 RchiOBHm_Chr5g0012911
rosa_laevigata	RLG00000020556 RLG00000031968
rosa_multiflora	Rmu_sc0000940.1_g000021 Rmu_sc0016318.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063670 Rroxscaffold_2G00096390
rosa_rugosa	Rorug02G0426600 Rorug02G0426700 Rorug02G0426800 Rorug05G0005100 Rorug05G0005100 Rorug05G0005100
rosa_samantha	Rh2AG487500 Rh2BG499900 Rh2CG474000 Rh2DG511100 Rh5AG099400 Rh5BG096000 Rh5CG108300 Rh5DG094700
rosa_wichuraiana	Rw2G039960 Rw5G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	722
Acc65I	GGTACC	1 cut(s)	2141
AccB1I	GGYRCC	3 cut(s)	1300, 1689, 2141
AccIII	TCCGGA	1 cut(s)	1399
AciI	CCGC	2 cut(s)	914, 2523
AclI	AACGTT	1 cut(s)	2377
AclWI	GGATC	8 cut(s)	91, 239, 413, 833, 846, 1378, 1471, 1666
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	5 cut(s)	42, 218, 1531, 1777, 2350
AcuI	CTGAAG	1 cut(s)	2534
AfaI	GTAC	6 cut(s)	138, 650, 944, 1190, 2096, 2143
AfiI	CCNNNNNNNGG	2 cut(s)	1922, 2323
AflII	CTTAAG	1 cut(s)	1411
AhdI	GACNNNNNGTC	1 cut(s)	1224
AjnI	CCWGG	8 cut(s)	289, 349, 1033, 1141, 1207, 1249, 1766, 2433
Alw21I	GWGCWC	3 cut(s)	616, 1045, 2332
Alw26I	GTCTC	3 cut(s)	360, 916, 2223
AlwI	GGATC	8 cut(s)	91, 239, 413, 833, 846, 1378, 1471, 1666
AlwNI	CAGNNNCTG	1 cut(s)	2417
Aor13HI	TCCGGA	1 cut(s)	1399
AoxI	GGCC	4 cut(s)	178, 1544, 1762, 1913
ApeKI	GCWGC	3 cut(s)	704, 959, 968
ApoI	RAATTY	5 cut(s)	42, 218, 1531, 1777, 2350
AseI	ATTAAT	2 cut(s)	1788, 2069
Asp700I	GAANNNNTTC	1 cut(s)	2442
Asp718I	GGTACC	1 cut(s)	2141
AspLEI	GCGC	1 cut(s)	723
AspS9I	GGNCC	5 cut(s)	816, 1445, 1490, 1763, 1913
AsuC2I	CCSGG	2 cut(s)	1833, 2047
AsuHPI	GGTGA	7 cut(s)	899, 1113, 1634, 1704, 1872, 2035, 2432
AvaII	GGWCC	3 cut(s)	816, 1445, 1490
BaeGI	GKGCMC	1 cut(s)	1799
BaeI	ACNNNNGTAYC	2 cut(s)	2125, 2158
BalI	TGGCCA	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	838
BanI	GGYRCC	3 cut(s)	1300, 1689, 2141
BanII	GRGCYC	2 cut(s)	1045, 2332
BbsI	GAAGAC	2 cut(s)	864, 2376
Bbv12I	GWGCWC	3 cut(s)	616, 1045, 2332
BbvCI	CCTCAGC	1 cut(s)	1628
BbvI	GCAGC	3 cut(s)	691, 946, 980
BccI	CCATC	8 cut(s)	231, 461, 481, 799, 850, 1653, 1675, 1940
BceAI	ACGGC	1 cut(s)	485
BciT130I	CCWGG	8 cut(s)	291, 351, 1035, 1143, 1209, 1251, 1768, 2435
BclI	TGATCA	1 cut(s)	2422
BcnI	CCSGG	2 cut(s)	1833, 2047
BcoDI	GTCTC	3 cut(s)	360, 916, 2223
BfaI	CTAG	2 cut(s)	123, 1256
BfmI	CTRYAG	2 cut(s)	474, 960
BfrI	CTTAAG	1 cut(s)	1411
BisI	GCNGC	4 cut(s)	705, 914, 960, 969
BlsI	GCNGC	4 cut(s)	706, 915, 961, 970
BmcAI	AGTACT	1 cut(s)	944
Bme18I	GGWCC	3 cut(s)	816, 1445, 1490
BmeRI	GACNNNNNGTC	1 cut(s)	1224
BmgT120I	GGNCC	5 cut(s)	816, 1445, 1490, 1763, 1913
BmiI	GGNNCC	9 cut(s)	817, 840, 1023, 1302, 1404, 1691, 1765, 1994, 2143
BmrI	ACTGGG	1 cut(s)	1020
BmsI	GCATC	6 cut(s)	97, 559, 1268, 1279, 1583, 2097
BmuI	ACTGGG	1 cut(s)	1020
BpiI	GAAGAC	2 cut(s)	864, 2376
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
BpmI	CTGGAG	4 cut(s)	541, 549, 1056, 1843
Bpu10I	CCTNAGC	1 cut(s)	1628
BpuEI	CTTGAG	3 cut(s)	85, 959, 1591
BpuMI	CCSGG	2 cut(s)	1833, 2047
BsaBI	GATNNNNATC	3 cut(s)	378, 807, 2130
BsaI	GGTCTC	1 cut(s)	360
BsaWI	WCCGGW	2 cut(s)	1399, 1714
BsaXI	ACNNNNNCTCC	4 cut(s)	1120, 1150, 2319, 2349
Bsc4I	CCNNNNNNNGG	2 cut(s)	1922, 2323
Bse1I	ACTGG	2 cut(s)	1026, 1860
Bse3DI	GCAATG	1 cut(s)	1430
Bse8I	GATNNNNATC	3 cut(s)	378, 807, 2130
BseAI	TCCGGA	1 cut(s)	1399
BseBI	CCWGG	8 cut(s)	291, 351, 1035, 1143, 1209, 1251, 1768, 2435
BseJI	GATNNNNATC	3 cut(s)	378, 807, 2130
BseLI	CCNNNNNNNGG	2 cut(s)	1922, 2323
BseMI	GCAATG	1 cut(s)	1430
BseMII	CTCAG	9 cut(s)	352, 425, 1374, 1562, 1642, 1708, 1947, 2415, 2489
BseNI	ACTGG	2 cut(s)	1026, 1860
BseRI	GAGGAG	8 cut(s)	75, 314, 317, 854, 1053, 1429, 1624, 1981
BseSI	GKGCMC	1 cut(s)	1799
BseXI	GCAGC	3 cut(s)	691, 946, 980
BseYI	CCCAGC	1 cut(s)	1149
BsgI	GTGCAG	1 cut(s)	1175
BshFI	GGCC	4 cut(s)	180, 1546, 1764, 1915
BshNI	GGYRCC	3 cut(s)	1300, 1689, 2141
BsiHKAI	GWGCWC	3 cut(s)	616, 1045, 2332
BsiSI	CCGG	4 cut(s)	1400, 1715, 1833, 2046
BslFI	GGGAC	6 cut(s)	308, 829, 1575, 1688, 1878, 1938
BslI	CCNNNNNNNGG	2 cut(s)	1922, 2323
BsmAI	GTCTC	3 cut(s)	360, 916, 2223
BsmFI	GGGAC	6 cut(s)	308, 829, 1575, 1688, 1878, 1938
BsmI	GAATGC	3 cut(s)	1390, 1674, 2249
BsnI	GGCC	4 cut(s)	180, 1546, 1764, 1915
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	4 cut(s)	616, 1045, 1799, 2332
Bsp13I	TCCGGA	1 cut(s)	1399
Bsp1407I	TGTACA	1 cut(s)	648
Bsp19I	CCATGG	1 cut(s)	1423
BspACI	CCGC	2 cut(s)	914, 2523
BspANI	GGCC	4 cut(s)	180, 1546, 1764, 1915
BspCNI	CTCAG	9 cut(s)	351, 426, 1373, 1561, 1641, 1707, 1948, 2414, 2488
BspEI	TCCGGA	1 cut(s)	1399
BspLI	GGNNCC	9 cut(s)	817, 840, 1023, 1302, 1404, 1691, 1765, 1994, 2143
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	8 cut(s)	91, 239, 413, 833, 846, 1378, 1471, 1666
BspT107I	GGYRCC	3 cut(s)	1300, 1689, 2141
BspTI	CTTAAG	1 cut(s)	1411
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	1430
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	1026, 1860
BssT1I	CCWWGG	5 cut(s)	11, 819, 1423, 2317, 2494
Bst2UI	CCWGG	8 cut(s)	291, 351, 1035, 1143, 1209, 1251, 1768, 2435
Bst4CI	ACNGT	5 cut(s)	523, 587, 1193, 1386, 2016
BstAFI	CTTAAG	1 cut(s)	1411
BstAUI	TGTACA	1 cut(s)	648
BstC8I	GCNNGC	4 cut(s)	284, 316, 548, 2509
BstDSI	CCRYGG	2 cut(s)	1113, 1423
BstHHI	GCGC	1 cut(s)	723
BstMAI	GTCTC	3 cut(s)	360, 916, 2223
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 320, 713, 965, 968, 2193, 2300
BstNI	CCWGG	8 cut(s)	291, 351, 1035, 1143, 1209, 1251, 1768, 2435
BstNSI	RCATGY	1 cut(s)	660
BstSFI	CTRYAG	2 cut(s)	474, 960
BstSLI	GKGCMC	1 cut(s)	1799
BstV1I	GCAGC	3 cut(s)	691, 946, 980
BstV2I	GAAGAC	2 cut(s)	864, 2376
BstX2I	RGATCY	3 cut(s)	838, 1370, 1658
BstXI	CCANNNNNNTGG	3 cut(s)	875, 1149, 1424
BstYI	RGATCY	3 cut(s)	838, 1370, 1658
BsuRI	GGCC	4 cut(s)	180, 1546, 1764, 1915
BtgI	CCRYGG	2 cut(s)	1113, 1423
BtsI	GCAGTG	3 cut(s)	651, 740, 1563
BtsIMutI	CAGTG	6 cut(s)	346, 651, 740, 1170, 1563, 1953
Cac8I	GCNNGC	4 cut(s)	284, 316, 548, 2509
CaiI	CAGNNNCTG	1 cut(s)	2417
CfoI	GCGC	1 cut(s)	723
Cfr13I	GGNCC	5 cut(s)	816, 1445, 1490, 1763, 1913
CsiI	ACCWGGT	1 cut(s)	1141
Csp6I	GTAC	6 cut(s)	137, 649, 943, 1189, 2095, 2142
CspCI	CAANNNNNGTGG	2 cut(s)	495, 530
CviQI	GTAC	6 cut(s)	137, 649, 943, 1189, 2095, 2142
DriI	GACNNNNNGTC	1 cut(s)	1224
EaeI	YGGCCR	1 cut(s)	178
Eam1105I	GACNNNNNGTC	1 cut(s)	1224
Ecl136II	GAGCTC	2 cut(s)	1043, 2330
Eco130I	CCWWGG	5 cut(s)	11, 819, 1423, 2317, 2494
Eco24I	GRGCYC	2 cut(s)	1045, 2332
Eco31I	GGTCTC	1 cut(s)	360
Eco32I	GATATC	2 cut(s)	684, 952
Eco47I	GGWCC	3 cut(s)	816, 1445, 1490
Eco53kI	GAGCTC	2 cut(s)	1043, 2330
Eco57I	CTGAAG	1 cut(s)	2534
EcoICRI	GAGCTC	2 cut(s)	1043, 2330
EcoO109I	RGGNCCY	2 cut(s)	816, 1763
EcoRII	CCWGG	8 cut(s)	289, 349, 1033, 1141, 1207, 1249, 1766, 2433
EcoRV	GATATC	2 cut(s)	684, 952
EcoT14I	CCWWGG	5 cut(s)	11, 819, 1423, 2317, 2494
EcoT22I	ATGCAT	1 cut(s)	2203
EcoT38I	GRGCYC	2 cut(s)	1045, 2332
ErhI	CCWWGG	5 cut(s)	11, 819, 1423, 2317, 2494
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	6 cut(s)	308, 829, 1575, 1688, 1878, 1938
FauI	CCCGC	1 cut(s)	2516
FauNDI	CATATG	3 cut(s)	541, 1185, 1341
FbaI	TGATCA	1 cut(s)	2422
Fnu4HI	GCNGC	4 cut(s)	705, 914, 960, 969
FriOI	GRGCYC	2 cut(s)	1045, 2332
Fsp4HI	GCNGC	4 cut(s)	705, 914, 960, 969
FspAI	RTGCGCAY	1 cut(s)	722
FspBI	CTAG	2 cut(s)	123, 1256
FspI	TGCGCA	1 cut(s)	722
GlaI	GCGC	1 cut(s)	722
GluI	GCNGC	4 cut(s)	705, 914, 960, 969
GsaI	CCCAGC	1 cut(s)	1153
GsuI	CTGGAG	4 cut(s)	541, 549, 1056, 1843
HaeIII	GGCC	4 cut(s)	180, 1546, 1764, 1915
HapII	CCGG	4 cut(s)	1400, 1715, 1833, 2046
HhaI	GCGC	1 cut(s)	723
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HindIII	AAGCTT	1 cut(s)	1886
HpaII	CCGG	4 cut(s)	1400, 1715, 1833, 2046
HphI	GGTGA	7 cut(s)	899, 1113, 1634, 1704, 1872, 2035, 2432
Hpy166II	GTNNAC	6 cut(s)	651, 662, 1121, 1347, 1493, 2097
Hpy188III	TCNNGA	9 cut(s)	81, 332, 359, 558, 1073, 1216, 1400, 1443, 1520
Hpy8I	GTNNAC	6 cut(s)	651, 662, 1121, 1347, 1493, 2097
Hpy99I	CGWCG	1 cut(s)	750
HpyAV	CCTTC	4 cut(s)	775, 1314, 1458, 2317
HpyCH4III	ACNGT	5 cut(s)	523, 587, 1193, 1386, 2016
HpyCH4IV	ACGT	3 cut(s)	2190, 2377, 2469
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 320, 713, 965, 968, 2193, 2300
HpySE526I	ACGT	3 cut(s)	2190, 2377, 2469
HspAI	GCGC	1 cut(s)	721
Kpn2I	TCCGGA	1 cut(s)	1399
KpnI	GGTACC	1 cut(s)	2145
Ksp22I	TGATCA	1 cut(s)	2422
LmnI	GCTCC	8 cut(s)	62, 304, 1040, 1402, 1637, 1669, 1968, 2327
Lsp1109I	GCAGC	3 cut(s)	691, 946, 980
LweI	GCATC	6 cut(s)	97, 559, 1268, 1279, 1583, 2097
MabI	ACCWGGT	1 cut(s)	1141
MaeI	CTAG	2 cut(s)	123, 1256
MaeII	ACGT	3 cut(s)	2190, 2377, 2469
MaeIII	GTNAC	4 cut(s)	992, 1126, 1710, 2335
MboII	GAAGA	9 cut(s)	18, 374, 383, 869, 1527, 2063, 2153, 2381, 2435
MfeI	CAATTG	3 cut(s)	249, 273, 2166
MflI	RGATCY	3 cut(s)	838, 1370, 1658
MhlI	GDGCHC	4 cut(s)	616, 1045, 1799, 2332
MlsI	TGGCCA	1 cut(s)	180
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	6 cut(s)	13, 1234, 1510, 1718, 1741, 2495
MmeI	TCCRAC	4 cut(s)	999, 1253, 1538, 1636
Mox20I	TGGCCA	1 cut(s)	180
Mph1103I	ATGCAT	1 cut(s)	2203
MroI	TCCGGA	1 cut(s)	1399
MroXI	GAANNNNTTC	1 cut(s)	2442
MscI	TGGCCA	1 cut(s)	180
MslI	CAYNNNNRTG	3 cut(s)	540, 1422, 1650
Msp20I	TGGCCA	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	49, 1472
MspCI	CTTAAG	1 cut(s)	1411
MspI	CCGG	4 cut(s)	1400, 1715, 1833, 2046
MunI	CAATTG	3 cut(s)	249, 273, 2166
Mva1269I	GAATGC	3 cut(s)	1390, 1674, 2249
MvaI	CCWGG	8 cut(s)	291, 351, 1035, 1143, 1209, 1251, 1768, 2435
MwoI	GCNNNNNNNGC	7 cut(s)	95, 320, 713, 965, 968, 2193, 2300
NciI	CCSGG	2 cut(s)	1833, 2047
NcoI	CCATGG	1 cut(s)	1423
NdeI	CATATG	3 cut(s)	541, 1185, 1341
NlaIV	GGNNCC	9 cut(s)	817, 840, 1023, 1302, 1404, 1691, 1765, 1994, 2143
NmuCI	GTSAC	3 cut(s)	992, 1710, 2335
NsbI	TGCGCA	1 cut(s)	722
NsiI	ATGCAT	1 cut(s)	2203
NspI	RCATGY	1 cut(s)	660
PasI	CCCWGGG	1 cut(s)	1767
PcsI	WCGNNNNNNNCGW	1 cut(s)	706
PctI	GAATGC	3 cut(s)	1390, 1674, 2249
PdmI	GAANNNNTTC	1 cut(s)	2442
PfeI	GAWTC	5 cut(s)	599, 1069, 1091, 2313, 2389
PfoI	TCCNGGA	1 cut(s)	2433
PkrI	GCNGC	4 cut(s)	706, 915, 961, 970
PleI	GAGTC	6 cut(s)	12, 1233, 1510, 1717, 1740, 2494
PpsI	GAGTC	6 cut(s)	12, 1233, 1510, 1717, 1740, 2494
PpuMI	RGGWCCY	1 cut(s)	816
PshBI	ATTAAT	2 cut(s)	1788, 2069
Psp124BI	GAGCTC	2 cut(s)	1045, 2332
Psp1406I	AACGTT	1 cut(s)	2377
Psp5II	RGGWCCY	1 cut(s)	816
Psp6I	CCWGG	8 cut(s)	289, 349, 1033, 1141, 1207, 1249, 1766, 2433
PspFI	CCCAGC	1 cut(s)	1149
PspGI	CCWGG	8 cut(s)	289, 349, 1033, 1141, 1207, 1249, 1766, 2433
PspN4I	GGNNCC	9 cut(s)	817, 840, 1023, 1302, 1404, 1691, 1765, 1994, 2143
PspPI	GGNCC	5 cut(s)	816, 1445, 1490, 1763, 1913
PspPPI	RGGWCCY	1 cut(s)	816
PstI	CTGCAG	1 cut(s)	964
PstNI	CAGNNNCTG	1 cut(s)	2417
PsuI	RGATCY	3 cut(s)	838, 1370, 1658
PvuII	CAGCTG	2 cut(s)	49, 1472
RsaI	GTAC	6 cut(s)	138, 650, 944, 1190, 2096, 2143
RsaNI	GTAC	6 cut(s)	137, 649, 943, 1189, 2095, 2142
RseI	CAYNNNNRTG	3 cut(s)	540, 1422, 1650
SacI	GAGCTC	2 cut(s)	1045, 2332
SatI	GCNGC	4 cut(s)	705, 914, 960, 969
Sau96I	GGNCC	5 cut(s)	816, 1445, 1490, 1763, 1913
ScaI	AGTACT	1 cut(s)	944
SchI	GAGTC	6 cut(s)	13, 1234, 1510, 1718, 1741, 2495
SduI	GDGCHC	4 cut(s)	616, 1045, 1799, 2332
SexAI	ACCWGGT	1 cut(s)	1141
SfaNI	GCATC	6 cut(s)	97, 559, 1268, 1279, 1583, 2097
SfcI	CTRYAG	2 cut(s)	474, 960
SinI	GGWCC	3 cut(s)	816, 1445, 1490
SmiMI	CAYNNNNRTG	3 cut(s)	540, 1422, 1650
SmlI	CTYRAG	4 cut(s)	100, 974, 1411, 1606
SmoI	CTYRAG	4 cut(s)	100, 974, 1411, 1606
SsiI	CCGC	2 cut(s)	914, 2523
SspI	AATATT	1 cut(s)	873
SspMI	CTAG	2 cut(s)	123, 1256
SstI	GAGCTC	2 cut(s)	1045, 2332
StyI	CCWWGG	5 cut(s)	11, 819, 1423, 2317, 2494
TaaI	ACNGT	5 cut(s)	523, 587, 1193, 1386, 2016
TaiI	ACGT	3 cut(s)	2193, 2380, 2472
TaqI	TCGA	4 cut(s)	594, 709, 939, 1577
TatI	WGTACW	4 cut(s)	136, 648, 942, 2094
TauI	GCSGC	1 cut(s)	916
TfiI	GAWTC	5 cut(s)	599, 1069, 1091, 2313, 2389
TscAI	CASTG	6 cut(s)	346, 658, 747, 1177, 1563, 1960
TseFI	GTSAC	3 cut(s)	992, 1710, 2335
TseI	GCWGC	3 cut(s)	704, 959, 968
Tsp45I	GTSAC	3 cut(s)	992, 1710, 2335
TspDTI	ATGAA	9 cut(s)	755, 870, 1104, 1383, 1713, 2142, 2378, 2382, 2490
TspGWI	ACGGA	2 cut(s)	763, 1102
TspRI	CASTG	6 cut(s)	346, 658, 747, 1177, 1563, 1960
Vha464I	CTTAAG	1 cut(s)	1411
VpaK11BI	GGWCC	3 cut(s)	816, 1445, 1490
VspI	ATTAAT	2 cut(s)	1788, 2069
XapI	RAATTY	5 cut(s)	42, 218, 1531, 1777, 2350
XceI	RCATGY	1 cut(s)	660
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1146, 1500, 1652
XmnI	GAANNNNTTC	1 cut(s)	2442
XspI	CTAG	2 cut(s)	123, 1256
ZrmI	AGTACT	1 cut(s)	944
Zsp2I	ATGCAT	1 cut(s)	2203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.