Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001229

Physical Location & Seq

Genomic Coordinates Forward (+)

54776975 .. 54777943

Gene Structure 969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0426800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTTTATCTGGAGTGTTTTCTACAAAAAGATTCTTACTAATGTGCAAAGAGCCAGAAGAGGCCTCACTGCCAACCCTACTTGCCCCATTTGCAATTCTGCTGATGAAAGTCTTCTTCATTTATTTAGAGATTGCCACAGGTCTATGGCCATTTGGAAACCTTTCCTTAAACCTGGTACCATTTTTAACTCCTTCTCTCTAGATTGGAATATTTGGGTGGTTGCTCAGCTTCACTGCCATACAAGGATCAAGAATAATATTAAGTGGTGTAGTTTATTTGTCTTTGTCTTATGGTTCATTTGGAAATGGAGGAATAAGGTGATTTTCGATCCTAAGTTTGTCATGCCTGCCTGCCCTGAGAGGATCATATGGGATTATGCAGAAGAATGGATTTGTGCGCAATCAAAGGTCAATTCTGACACCATGTACAACTACATTATGCTTTCTTGGAGCAGACCTCCTATGAACTATTTCAAATTGAATATTGATGGGACTAGAGTTTCGTATTCTGGGAAAATTGGTGCAGGAGGGGTTATCAGAGACCATAATAGCAACTGGGTGGATGGGTTTCAAATTAATCTTGGTGTTGGGGAAATTCTTGATGCTGAGGCTTGGGGTCTTTTCTTTGGTTTAAAGTTAGCCTCAAAGCATAACATTACTAATTTGGAGATTGAATCAGATTCTGCTGTGCCGGTTCAACTTGTGCAAAACTCTGACAAGTCTCTGCATCCCCTTGGTTCTATGCTTGCTGGCTGTGATCTAATGTTGGCTAAGTTTCAGAATGTCAAACTGACACACATCTTTAGAGAATGTAACATGACTGCTGACGCCCTTGCCAAGAATAGCATTCTTCATGAACCTAGATTTGTCACTTTTGACAATCCCCCTGCTCATGCTGCCCAAACTTTCTTGGATGATTTGTCTGATGTAACTAGAGCTAGGAGGATTGGTTTTTGTTCAAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

322

Amino Acids

36.95

Weight (kDa)

8.77

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	1 - 52	3.3e-09	zinc-binding in reverse transcriptase
RVT_3	PF13456	161 - 281	1.4e-25	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29400 AT1G29400 AT1G29400
fragaria_vesca	FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250
malus_domestica	MD05G1291700.v1.1 MD09G1151600.v1.1 MD10G1267700.v1.1 MD17G1139300.v1.1
prunus_persica	Prupe.3G172900_v2.0.a1 Prupe.4G073800_v2.0.a1
pyrus_communis	pycom05g26820 pycom09g07120 pycom10g22380 pycom17g13240
rosa_chinensis	RchiOBHm_Chr2g0151511 RchiOBHm_Chr5g0012911
rosa_laevigata	RLG00000020556 RLG00000031968
rosa_multiflora	Rmu_sc0000940.1_g000021 Rmu_sc0016318.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063670 Rroxscaffold_2G00096390
rosa_rugosa	Rorug02G0426600 Rorug02G0426700 Rorug02G0426800 Rorug05G0005100 Rorug05G0005100 Rorug05G0005100
rosa_samantha	Rh2AG487500 Rh2BG499900 Rh2CG474000 Rh2DG511100 Rh5AG099400 Rh5BG096000 Rh5CG108300 Rh5DG094700
rosa_wichuraiana	Rw2G039960 Rw5G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	399
Acc65I	GGTACC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	176
AclWI	GGATC	3 cut(s)	254, 323, 371
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	828
AfaI	GTAC	2 cut(s)	178, 428
AgsI	TTSAA	6 cut(s)	475, 481, 572, 674, 698, 960
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	2 cut(s)	229, 938
AluI	AGCT	2 cut(s)	229, 938
Alw26I	GTCTC	2 cut(s)	534, 726
AlwI	GGATC	3 cut(s)	254, 323, 371
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	61, 147
ApeKI	GCWGC	1 cut(s)	896
ApoI	RAATTY	1 cut(s)	594
ArsI	GACNNNNNNTTYG	2 cut(s)	484, 516
AseI	ATTAAT	1 cut(s)	576
Asp700I	GAANNNNTTC	3 cut(s)	111, 161, 470
Asp718I	GGTACC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	883
BccI	CCATC	2 cut(s)	482, 557
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	534, 726
BfaI	CTAG	5 cut(s)	200, 495, 861, 933, 939
BisI	GCNGC	1 cut(s)	897
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	898
Bme1390I	CCNGG	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	565
BmsI	GCATC	2 cut(s)	592, 736
BmuI	ACTGGG	1 cut(s)	565
BpiI	GAAGAC	1 cut(s)	104
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	828
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	733
BsaXI	ACNNNNNCTCC	2 cut(s)	934, 964
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	733
BseGI	GGATG	3 cut(s)	568, 727, 919
BseMII	CTCAG	3 cut(s)	239, 348, 597
BseNI	ACTGG	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	883
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	2 cut(s)	63, 149
BshNI	GGYRCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	692
BslFI	GGGAC	1 cut(s)	505
BsmAI	GTCTC	2 cut(s)	534, 726
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	846
BsnI	GGCC	2 cut(s)	63, 149
Bso31I	GGTCTC	1 cut(s)	534
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	246, 328, 363, 757
Bsp1720I	GCTNAGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	63, 149
BspCNI	CTCAG	3 cut(s)	238, 349, 598
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	3 cut(s)	254, 323, 371
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	691
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	560
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	4 cut(s)	246, 328, 363, 757
BssNI	GRCGYC	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	828
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	4 cut(s)	348, 352, 747, 751
BstDEI	CTNAG	6 cut(s)	225, 333, 357, 606, 771, 966
BstF5I	GGATG	3 cut(s)	568, 727, 919
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	4 cut(s)	249, 331, 366, 760
BstMAI	GTCTC	2 cut(s)	534, 726
BstMBI	GATC	4 cut(s)	246, 328, 363, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 896
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	883
BstV2I	GAAGAC	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	63, 149
BtsCI	GGATG	3 cut(s)	568, 727, 919
BtsI	GCAGTG	2 cut(s)	66, 232
BtsIMutI	CAGTG	2 cut(s)	66, 232
Cac8I	GCNNGC	4 cut(s)	348, 352, 747, 751
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	853
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	691
CseI	GACGC	1 cut(s)	836
CsiI	ACCWGGT	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	177, 427
CviAII	CATG	5 cut(s)	343, 424, 817, 854, 893
CviJI	RGCY	9 cut(s)	53, 63, 149, 229, 611, 641, 753, 770, 938
CviKI_1	RGCY	9 cut(s)	53, 63, 149, 229, 611, 641, 753, 770, 938
CviQI	GTAC	2 cut(s)	177, 427
DdeI	CTNAG	6 cut(s)	225, 333, 357, 606, 771, 966
DpnI	GATC	4 cut(s)	248, 330, 365, 759
DpnII	GATC	4 cut(s)	246, 328, 363, 757
DraI	TTTAAA	1 cut(s)	633
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	733
Eco147I	AGGCCT	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	733
ErhI	CCWWGG	1 cut(s)	733
FaeI	CATG	5 cut(s)	346, 427, 820, 857, 896
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	5 cut(s)	342, 423, 816, 853, 892
FauNDI	CATATG	1 cut(s)	368
Fnu4HI	GCNGC	1 cut(s)	897
FokI	GGATG	3 cut(s)	575, 714, 926
Fsp4HI	GCNGC	1 cut(s)	897
FspBI	CTAG	5 cut(s)	200, 495, 861, 933, 939
FspI	TGCGCA	1 cut(s)	399
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	897
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	63, 149
HapII	CCGG	1 cut(s)	692
HgaI	GACGC	1 cut(s)	836
HhaI	GCGC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	828
Hin1II	CATG	5 cut(s)	346, 427, 820, 857, 896
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HinfI	GANTC	3 cut(s)	31, 674, 680
HpaII	CCGG	1 cut(s)	692
HphI	GGTGA	1 cut(s)	331
Hpy188I	TCNGA	6 cut(s)	418, 539, 679, 715, 780, 925
Hpy188III	TCNNGA	5 cut(s)	10, 200, 250, 599, 854
HpyAV	CCTTC	1 cut(s)	202
HpyCH4V	TGCA	6 cut(s)	46, 93, 380, 524, 706, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 896
HpyF3I	CTNAG	6 cut(s)	225, 333, 357, 606, 771, 966
Hsp92I	GRCGYC	1 cut(s)	828
Hsp92II	CATG	5 cut(s)	346, 427, 820, 857, 896
HspAI	GCGC	1 cut(s)	398
KpnI	GGTACC	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	246, 328, 363, 757
LmnI	GCTCC	1 cut(s)	450
Lsp1109I	GCAGC	1 cut(s)	883
LweI	GCATC	2 cut(s)	592, 736
MabI	ACCWGGT	1 cut(s)	172
MaeI	CTAG	5 cut(s)	200, 495, 861, 933, 939
MaeIII	GTNAC	3 cut(s)	812, 868, 928
MalI	GATC	4 cut(s)	248, 330, 365, 759
MboI	GATC	4 cut(s)	246, 328, 363, 757
MboII	GAAGA	5 cut(s)	69, 104, 107, 395, 842
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	7 cut(s)	94, 412, 476, 516, 573, 594, 661
MluNI	TGGCCA	1 cut(s)	149
MnlI	CCTC	9 cut(s)	53, 74, 303, 354, 468, 521, 601, 652, 936
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	3 cut(s)	111, 161, 470
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	5 cut(s)	168, 186, 261, 576, 632
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	1 cut(s)	692
MspR9I	CCNGG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	90, 896
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	4 cut(s)	246, 328, 363, 757
NlaIII	CATG	5 cut(s)	346, 427, 820, 857, 896
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	868
NsbI	TGCGCA	1 cut(s)	399
PagI	TCATGA	1 cut(s)	853
PceI	AGGCCT	1 cut(s)	63
PctI	GAATGC	1 cut(s)	846
PdmI	GAANNNNTTC	3 cut(s)	111, 161, 470
PfeI	GAWTC	3 cut(s)	31, 674, 680
PkrI	GCNGC	1 cut(s)	898
PshBI	ATTAAT	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	178, 428
RsaNI	GTAC	2 cut(s)	177, 427
SaqAI	TTAA	5 cut(s)	168, 186, 261, 576, 632
SatI	GCNGC	1 cut(s)	897
Sau3AI	GATC	4 cut(s)	246, 328, 363, 757
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	9 cut(s)	143, 163, 175, 231, 321, 411, 460, 862, 940
SexAI	ACCWGGT	1 cut(s)	172
SfaNI	GCATC	2 cut(s)	592, 736
Sse9I	AATT	7 cut(s)	94, 412, 476, 516, 573, 594, 661
SseBI	AGGCCT	1 cut(s)	63
SspI	AATATT	3 cut(s)	211, 259, 484
SspMI	CTAG	5 cut(s)	200, 495, 861, 933, 939
StuI	AGGCCT	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	733
TaqI	TCGA	1 cut(s)	327
TasI	AATT	7 cut(s)	94, 412, 476, 516, 573, 594, 661
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	3 cut(s)	31, 674, 680
Tru1I	TTAA	5 cut(s)	168, 186, 261, 576, 632
Tru9I	TTAA	5 cut(s)	168, 186, 261, 576, 632
TscAI	CASTG	2 cut(s)	73, 239
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	1 cut(s)	896
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	6 cut(s)	107, 120, 286, 479, 842, 870
TspRI	CASTG	2 cut(s)	73, 239
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	1 cut(s)	594
XbaI	TCTAGA	1 cut(s)	199
XmnI	GAANNNNTTC	3 cut(s)	111, 161, 470
XspI	CTAG	5 cut(s)	200, 495, 861, 933, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.