Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001229

Physical Location & Seq

Genomic Coordinates Forward (+)

8936357 .. 8942366

Gene Structure 6010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG108300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGAGTCAGCCTTGGAACTTTTCATCTTCTGGTTCTACTAAAACTCAGATGGTCGGTAGAGGAGCATGGGGGATTTTATCTGGATCTGATGCCCATCATACCTCAAGTGATGCTACCCTTTTCTCAAGCTCATTACCCGTACTTCCTCATCCAAAGTTGAACTTGAATGATGTGGAAAATGACCGCCAATCTATTGATGATCTCTCGTCTGGCTTAAAGAAACTCCATCAAAATTTGGAGGGTAATGATCCAATTGATGATATTGAAACTCATGCAATTGGTAGCTTGCTTCCTGGGGACGAGGAGGAGCTTTTAGCTGGCATAGCGGATGATCTTGACCTCAGTGGGTTGCCTGGGTCCCTGGAAGACTTGGAGGAGTATGATCTCTTTGGCAGTGGAGGTGGCATGGAATTGGAAAGCGATCCACAGGATAGTCTGAGAATTGGCATTTCAAAAGTAAGTTTATCTGATGGTTCTATGGGGAATGGGATGCTTAATTCTGCCCTTTCAAACGGTGTGGGAACTGTTGCCGGAGAACATCCATATGGCGAGCATCCCTCCAGAACACTATTTGTGCGAAATATCAACAGTAATGTTGAGGATTCAGAACTAAGAGCACTTTTTGAGCAATATGGTGATATCAGAACACTGTACACTGCATGTAAACATAGGGGCTTTGTGATGATATCTTATTATGATATTCGTGCTGCTCGAACTGCTATGCGTTTGTTACAAAACAAGCCACTGCGACGGAGGAAACTTGATATTCATTTTTCAATACCGAAGGATAACCCATCAGAGAAGGACGTTAATCAAGGGACCTTGGTAGTTTTTAATTTGGATCCATCAGTTTCAAATGAAGACCTCCTTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGATAAGGGAAACGCCGCATAAGAGACACCATAAGTTTATTGAGTACTATGATGTCAGAGCTGCAGAAGCAGCACTTAAGTCATTAAATAGGAGTGACATAGCTGGTAAACGCATAAAGTTGGAACCCAGTCGCCCTGGAGGAGCTCGTCGAAACTTGATGTTGCAACTGAATCAAGACCCTGAACAAGATGAATCTCGGAATTATCTACATCCAGTGGGTTCACCCGTAACCAACTCTCCACCAGGTAGCTGGGTGCAGTTCAACAGCCCCACTGAACATAGTCCTATGTACAGTATTAGTAAATCTCCTGGTTTCAGGACCATGAGTCCGACAAACAGCAACTATTTGCCTGGACTAGCGTCAATTCTGCATCCCCAAGTATCAAACACTCTGAAAGTGGCACCTATTGGTAGCCCAGGAAGGGGGGGTATTTCAAATCAGATCTTTACAAATACAAACTCAGCACATGGATCTGCATTTCAACAATCACATTCAGTTCCAGAGCCACAGTTAAGCCATTTCCATGGCACATTGCACTCCTCTGGACCTTCAACTTCAAGTGGATCATCAGCTGTGGAAACATTATCAGGTCCACAATTTCTTTGGGGAAGTCCAACTGTTGAAAAAACCAATTCTTCTGTTTGGCCTCAGAAAGCAGTGGGACATCAACTTGCATCAAATGGGAAGGGGCATACCCATCCATTCTCAGGTCCTCATAGCTCTTTCCTCAGCTCATCCCCTCACCATCATCATGTTGGATCTGCTCCATCTGGCATTCCATTCGACAGGCACTTTAGTTATGTCCCAGAGTCGGCGGAAACTTCATATTTGAGTCCTGTTGCCTATGGAGGCATGGGATTAGGCCCCAGTGGTGGAAATTTTAGGATTAATAGGGGCACTCATACCGCTACAAATGTTGGCTTTTCCATACCAGGAAGTGTGCCTGAAAGTAGTTCCTCCAGTTTTAAAATGATGTCCTCACCGAAGCTTAGCCCCGTGTTTTTAGGTAATGGGCCATACATGGGACTGCCTCCTATAAGCATTGATGGTTTGACCGAGCGTGGGAGGAGCAGACGAGTTGAGAATAATGGGAACCAGATTGATAGCAAGAAACAGTTTCAACTTGATTTGGATAAGATTGTCAGCGGGGAAGATACCCGAACAACATTAATGATAAAAAATATCCCAAATAAGTACACCTCAAAAATGCTACTTGCTGCAATAGATGAAAATCACAAGGGTACTTATGATTTTCTCTATCTTCCAATTGATTTTAAGAATAAGTGCAACGTGGGCTATGCATTTATCAATATGCTGTCTCCTTCACACATCATCCCATTTTATGAGGCATTCAATGGAAAGAAATGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCTTATGGGCGAATCCAGGGGAAGGCAGCTCTTGTGACCCATTTTCAAAATTCAAGCCTAATGAATGAAGACAAACGCTGTCGCCCGATTCTCTTTATCTCAGAGAGTTCAGAGGCTGGTGATCAGGTAGCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

813

Amino Acids

88.59

Weight (kDa)

6.37

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	190 - 254	1.9e-09	RNA recognition motif
RRM_5	PF13893	271 - 347	9.3e-07	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	275 - 340	2.7e-11	RNA recognition motif
RRM_2	PF04059	688 - 784	3.2e-54	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29400 AT1G29400 AT1G29400
fragaria_vesca	FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250
malus_domestica	MD05G1291700.v1.1 MD09G1151600.v1.1 MD10G1267700.v1.1 MD17G1139300.v1.1
prunus_persica	Prupe.3G172900_v2.0.a1 Prupe.4G073800_v2.0.a1
pyrus_communis	pycom05g26820 pycom09g07120 pycom10g22380 pycom17g13240
rosa_chinensis	RchiOBHm_Chr2g0151511 RchiOBHm_Chr5g0012911
rosa_laevigata	RLG00000020556 RLG00000031968
rosa_multiflora	Rmu_sc0000940.1_g000021 Rmu_sc0016318.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063670 Rroxscaffold_2G00096390
rosa_rugosa	Rorug02G0426600 Rorug02G0426700 Rorug02G0426800 Rorug05G0005100 Rorug05G0005100 Rorug05G0005100
rosa_samantha	Rh2AG487500 Rh2BG499900 Rh2CG474000 Rh2DG511100 Rh5AG099400 Rh5BG096000 Rh5CG108300 Rh5DG094700
rosa_wichuraiana	Rw2G039960 Rw5G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1303
AciI	CCGC	6 cut(s)	184, 326, 917, 1718, 1809, 2049
AclWI	GGATC	8 cut(s)	91, 242, 416, 836, 849, 1381, 1474, 1669
AcsI	RAATTY	3 cut(s)	232, 1780, 2353
AfaI	GTAC	6 cut(s)	141, 653, 947, 1193, 2099, 2146
AfiI	CCNNNNNNNGG	8 cut(s)	1324, 1325, 1610, 1714, 1775, 1925, 1965, 2326
AflII	CTTAAG	1 cut(s)	977
AhdI	GACNNNNNGTC	1 cut(s)	1227
Alw21I	GWGCWC	2 cut(s)	619, 1048
Alw26I	GTCTC	2 cut(s)	919, 2226
AlwI	GGATC	8 cut(s)	91, 242, 416, 836, 849, 1381, 1474, 1669
AlwNI	CAGNNNCTG	1 cut(s)	2420
AoxI	GGCC	3 cut(s)	1547, 1765, 1916
ApeKI	GCWGC	5 cut(s)	707, 962, 971, 2120, 2330
ApoI	RAATTY	3 cut(s)	232, 1780, 2353
AseI	ATTAAT	2 cut(s)	1791, 2072
AspS9I	GGNCC	8 cut(s)	357, 819, 1221, 1448, 1493, 1613, 1766, 1916
AsuHPI	GGTGA	6 cut(s)	647, 902, 1116, 1637, 1875, 2435
AvaII	GGWCC	6 cut(s)	357, 819, 1221, 1448, 1493, 1613
BaeGI	GKGCMC	1 cut(s)	1802
BamHI	GGATCC	1 cut(s)	841
BanI	GGYRCC	1 cut(s)	1303
BanII	GRGCYC	1 cut(s)	1048
BbsI	GAAGAC	3 cut(s)	372, 867, 2379
Bbv12I	GWGCWC	2 cut(s)	619, 1048
BbvCI	CCTCAGC	1 cut(s)	1631
BbvI	GCAGC	5 cut(s)	694, 949, 983, 2107, 2342
BcgI	CGANNNNNNTGC	2 cut(s)	1666, 1700
BclI	TGATCA	1 cut(s)	2425
BcoDI	GTCTC	2 cut(s)	919, 2226
BfaI	CTAG	1 cut(s)	1259
BfmI	CTRYAG	1 cut(s)	963
BfrI	CTTAAG	1 cut(s)	977
BglII	AGATCT	1 cut(s)	1344
BisI	GCNGC	6 cut(s)	708, 917, 963, 972, 2121, 2331
BlpI	GCTNAGC	1 cut(s)	1892
BlsI	GCNGC	6 cut(s)	709, 918, 964, 973, 2122, 2332
BmcAI	AGTACT	1 cut(s)	947
Bme18I	GGWCC	6 cut(s)	357, 819, 1221, 1448, 1493, 1613
BmeRI	GACNNNNNGTC	1 cut(s)	1227
BmgT120I	GGNCC	8 cut(s)	357, 819, 1221, 1448, 1493, 1613, 1766, 1916
BmiI	GGNNCC	8 cut(s)	358, 359, 820, 843, 1026, 1305, 1768, 1997
BmrI	ACTGGG	2 cut(s)	1023, 1764
BmsI	GCATC	6 cut(s)	79, 100, 480, 562, 1282, 1586
BmuI	ACTGGG	2 cut(s)	1023, 1764
BoxI	GACNNNNGTC	1 cut(s)	1261
BpiI	GAAGAC	3 cut(s)	372, 867, 2379
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
BpmI	CTGGAG	3 cut(s)	544, 1059, 1846
Bpu10I	CCTNAGC	1 cut(s)	1631
Bpu1102I	GCTNAGC	1 cut(s)	1892
BpuEI	CTTGAG	2 cut(s)	88, 109
BsaBI	GATNNNNATC	2 cut(s)	93, 2133
BsaJI	CCNNGG	9 cut(s)	11, 293, 353, 360, 822, 1036, 1318, 1426, 2320
BsaXI	ACNNNNNCTCC	2 cut(s)	1123, 1153
Bsc4I	CCNNNNNNNGG	8 cut(s)	1324, 1325, 1610, 1714, 1775, 1925, 1965, 2326
Bse1I	ACTGG	4 cut(s)	1029, 1115, 1770, 1863
Bse3DI	GCAATG	1 cut(s)	1433
Bse8I	GATNNNNATC	2 cut(s)	93, 2133
BseDI	CCNNGG	9 cut(s)	11, 293, 353, 360, 822, 1036, 1318, 1426, 2320
BseJI	GATNNNNATC	2 cut(s)	93, 2133
BseLI	CCNNNNNNNGG	8 cut(s)	1324, 1325, 1610, 1714, 1775, 1925, 1965, 2326
BseMI	GCAATG	1 cut(s)	1433
BseMII	CTCAG	8 cut(s)	59, 355, 428, 1377, 1565, 1623, 1645, 2418
BseNI	ACTGG	4 cut(s)	1029, 1115, 1770, 1863
BseRI	GAGGAG	7 cut(s)	75, 317, 320, 389, 1056, 1432, 1984
BseSI	GKGCMC	1 cut(s)	1802
BseXI	GCAGC	5 cut(s)	694, 949, 983, 2107, 2342
BseYI	CCCAGC	1 cut(s)	1152
BsgI	GTGCAG	1 cut(s)	1178
BshFI	GGCC	3 cut(s)	1549, 1767, 1918
BshNI	GGYRCC	1 cut(s)	1303
BsiHKAI	GWGCWC	2 cut(s)	619, 1048
BsiSI	CCGG	1 cut(s)	531
BslFI	GGGAC	6 cut(s)	311, 343, 832, 1578, 1691, 1941
BslI	CCNNNNNNNGG	8 cut(s)	1324, 1325, 1610, 1714, 1775, 1925, 1965, 2326
BsmAI	GTCTC	2 cut(s)	919, 2226
BsmFI	GGGAC	6 cut(s)	311, 343, 832, 1578, 1691, 1941
BsmI	GAATGC	2 cut(s)	1677, 2252
BsnI	GGCC	3 cut(s)	1549, 1767, 1918
Bsp1286I	GDGCHC	3 cut(s)	619, 1048, 1802
Bsp1407I	TGTACA	2 cut(s)	651, 1191
Bsp1720I	GCTNAGC	1 cut(s)	1892
Bsp19I	CCATGG	1 cut(s)	1426
BspACI	CCGC	6 cut(s)	184, 326, 917, 1718, 1809, 2049
BspANI	GGCC	3 cut(s)	1549, 1767, 1918
BspCNI	CTCAG	8 cut(s)	58, 354, 429, 1376, 1564, 1622, 1644, 2417
BspLI	GGNNCC	8 cut(s)	358, 359, 820, 843, 1026, 1305, 1768, 1997
BspMAI	CTGCAG	1 cut(s)	967
BspPI	GGATC	8 cut(s)	91, 242, 416, 836, 849, 1381, 1474, 1669
BspT107I	GGYRCC	1 cut(s)	1303
BspTI	CTTAAG	1 cut(s)	977
BsrDI	GCAATG	1 cut(s)	1433
BsrGI	TGTACA	2 cut(s)	651, 1191
BsrI	ACTGG	4 cut(s)	1029, 1115, 1770, 1863
BssECI	CCNNGG	9 cut(s)	11, 293, 353, 360, 822, 1036, 1318, 1426, 2320
BssT1I	CCWWGG	3 cut(s)	11, 822, 1426
Bst4CI	ACNGT	8 cut(s)	515, 526, 590, 651, 1196, 1413, 1522, 2019
BstAFI	CTTAAG	1 cut(s)	977
BstAUI	TGTACA	2 cut(s)	651, 1191
BstC8I	GCNNGC	3 cut(s)	287, 319, 551
BstDSI	CCRYGG	1 cut(s)	1426
BstMAI	GTCTC	2 cut(s)	919, 2226
BstMWI	GCNNNNNNNGC	6 cut(s)	323, 716, 968, 971, 2196, 2303
BstNSI	RCATGY	1 cut(s)	663
BstPAI	GACNNNNGTC	1 cut(s)	1261
BstSFI	CTRYAG	1 cut(s)	963
BstSLI	GKGCMC	1 cut(s)	1802
BstV1I	GCAGC	5 cut(s)	694, 949, 983, 2107, 2342
BstV2I	GAAGAC	3 cut(s)	372, 867, 2379
BstX2I	RGATCY	5 cut(s)	83, 841, 1344, 1373, 1661
BstXI	CCANNNNNNTGG	2 cut(s)	1152, 1427
BstYI	RGATCY	5 cut(s)	83, 841, 1344, 1373, 1661
BsuRI	GGCC	3 cut(s)	1549, 1767, 1918
BtgI	CCRYGG	1 cut(s)	1426
BtsI	GCAGTG	4 cut(s)	400, 654, 743, 1566
BtsIMutI	CAGTG	9 cut(s)	349, 400, 647, 654, 743, 1122, 1173, 1566, 1777
Cac8I	GCNNGC	3 cut(s)	287, 319, 551
CaiI	CAGNNNCTG	1 cut(s)	2420
Cfr13I	GGNCC	8 cut(s)	357, 819, 1221, 1448, 1493, 1613, 1766, 1916
CseI	GACGC	1 cut(s)	1251
CsiI	ACCWGGT	1 cut(s)	1144
Csp6I	GTAC	6 cut(s)	140, 652, 946, 1192, 2098, 2145
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviQI	GTAC	6 cut(s)	140, 652, 946, 1192, 2098, 2145
DraI	TTTAAA	1 cut(s)	1870
DriI	GACNNNNNGTC	1 cut(s)	1227
Eam1105I	GACNNNNNGTC	1 cut(s)	1227
EciI	GGCGGA	1 cut(s)	1733
Ecl136II	GAGCTC	1 cut(s)	1046
Eco130I	CCWWGG	3 cut(s)	11, 822, 1426
Eco24I	GRGCYC	1 cut(s)	1048
Eco32I	GATATC	2 cut(s)	640, 687
Eco47I	GGWCC	6 cut(s)	357, 819, 1221, 1448, 1493, 1613
Eco53kI	GAGCTC	1 cut(s)	1046
EcoICRI	GAGCTC	1 cut(s)	1046
EcoO109I	RGGNCCY	4 cut(s)	357, 819, 1613, 1766
EcoRV	GATATC	2 cut(s)	640, 687
EcoT14I	CCWWGG	3 cut(s)	11, 822, 1426
EcoT22I	ATGCAT	1 cut(s)	2206
EcoT38I	GRGCYC	1 cut(s)	1048
ErhI	CCWWGG	3 cut(s)	11, 822, 1426
FalI	AAGNNNNNCTT	6 cut(s)	146, 178, 852, 884, 960, 992
FaqI	GGGAC	6 cut(s)	311, 343, 832, 1578, 1691, 1941
FauI	CCCGC	1 cut(s)	2042
FauNDI	CATATG	1 cut(s)	544
FbaI	TGATCA	1 cut(s)	2425
Fnu4HI	GCNGC	6 cut(s)	708, 917, 963, 972, 2121, 2331
FriOI	GRGCYC	1 cut(s)	1048
Fsp4HI	GCNGC	6 cut(s)	708, 917, 963, 972, 2121, 2331
FspBI	CTAG	1 cut(s)	1259
GluI	GCNGC	6 cut(s)	708, 917, 963, 972, 2121, 2331
GsaI	CCCAGC	1 cut(s)	1156
GsuI	CTGGAG	3 cut(s)	544, 1059, 1846
HaeIII	GGCC	3 cut(s)	1549, 1767, 1918
HapII	CCGG	1 cut(s)	531
HgaI	GACGC	1 cut(s)	1251
HindIII	AAGCTT	1 cut(s)	1889
HinfI	GANTC	9 cut(s)	4, 602, 1072, 1094, 1228, 1712, 1735, 2316, 2392
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	6 cut(s)	647, 902, 1116, 1637, 1875, 2435
Hpy166II	GTNNAC	6 cut(s)	654, 665, 1010, 1124, 1496, 2100
Hpy188III	TCNNGA	7 cut(s)	81, 335, 561, 1076, 1219, 1403, 1446
Hpy8I	GTNNAC	6 cut(s)	654, 665, 1010, 1124, 1496, 2100
Hpy99I	CGWCG	2 cut(s)	753, 1053
HpyAV	CCTTC	8 cut(s)	778, 796, 878, 1317, 1461, 1582, 2235, 2320
HpyCH4III	ACNGT	8 cut(s)	515, 526, 590, 651, 1196, 1413, 1522, 2019
HpyCH4IV	ACGT	2 cut(s)	807, 2193
HpyF10VI	GCNNNNNNNGC	6 cut(s)	323, 716, 968, 971, 2196, 2303
HpySE526I	ACGT	2 cut(s)	807, 2193
KflI	GGGWCCC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	2425
LmnI	GCTCC	5 cut(s)	62, 307, 1043, 1672, 1971
Lsp1109I	GCAGC	5 cut(s)	694, 949, 983, 2107, 2342
LweI	GCATC	6 cut(s)	79, 100, 480, 562, 1282, 1586
MabI	ACCWGGT	1 cut(s)	1144
MaeI	CTAG	1 cut(s)	1259
MaeII	ACGT	2 cut(s)	807, 2193
MaeIII	GTNAC	4 cut(s)	729, 995, 1129, 2338
MboII	GAAGA	7 cut(s)	18, 377, 872, 1530, 2066, 2156, 2384
MfeI	CAATTG	3 cut(s)	252, 276, 2169
MflI	RGATCY	5 cut(s)	83, 841, 1344, 1373, 1661
MhlI	GDGCHC	3 cut(s)	619, 1048, 1802
MlyI	GAGTC	4 cut(s)	13, 1237, 1721, 1744
MmeI	TCCRAC	4 cut(s)	1002, 1256, 1541, 1639
Mph1103I	ATGCAT	1 cut(s)	2206
MslI	CAYNNNNRTG	3 cut(s)	543, 1425, 1653
MspA1I	CMGCKG	2 cut(s)	1475, 2049
MspCI	CTTAAG	1 cut(s)	977
MspI	CCGG	1 cut(s)	531
MunI	CAATTG	3 cut(s)	252, 276, 2169
Mva1269I	GAATGC	2 cut(s)	1677, 2252
MwoI	GCNNNNNNNGC	6 cut(s)	323, 716, 968, 971, 2196, 2303
NcoI	CCATGG	1 cut(s)	1426
NdeI	CATATG	1 cut(s)	544
NlaIV	GGNNCC	8 cut(s)	358, 359, 820, 843, 1026, 1305, 1768, 1997
NmuCI	GTSAC	2 cut(s)	995, 2338
NsiI	ATGCAT	1 cut(s)	2206
NspI	RCATGY	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	1 cut(s)	709
PctI	GAATGC	2 cut(s)	1677, 2252
PfeI	GAWTC	5 cut(s)	602, 1072, 1094, 2316, 2392
PkrI	GCNGC	6 cut(s)	709, 918, 964, 973, 2122, 2332
PleI	GAGTC	4 cut(s)	12, 1236, 1720, 1743
PpsI	GAGTC	4 cut(s)	12, 1236, 1720, 1743
PpuMI	RGGWCCY	3 cut(s)	357, 819, 1613
PshAI	GACNNNNGTC	1 cut(s)	1261
PshBI	ATTAAT	2 cut(s)	1791, 2072
Psp124BI	GAGCTC	1 cut(s)	1048
Psp5II	RGGWCCY	3 cut(s)	357, 819, 1613
PspFI	CCCAGC	1 cut(s)	1152
PspN4I	GGNNCC	8 cut(s)	358, 359, 820, 843, 1026, 1305, 1768, 1997
PspPI	GGNCC	8 cut(s)	357, 819, 1221, 1448, 1493, 1613, 1766, 1916
PspPPI	RGGWCCY	3 cut(s)	357, 819, 1613
PstI	CTGCAG	1 cut(s)	967
PstNI	CAGNNNCTG	1 cut(s)	2420
PsuI	RGATCY	5 cut(s)	83, 841, 1344, 1373, 1661
PvuII	CAGCTG	1 cut(s)	1475
RsaI	GTAC	6 cut(s)	141, 653, 947, 1193, 2099, 2146
RsaNI	GTAC	6 cut(s)	140, 652, 946, 1192, 2098, 2145
RseI	CAYNNNNRTG	3 cut(s)	543, 1425, 1653
SacI	GAGCTC	1 cut(s)	1048
SatI	GCNGC	6 cut(s)	708, 917, 963, 972, 2121, 2331
Sau96I	GGNCC	8 cut(s)	357, 819, 1221, 1448, 1493, 1613, 1766, 1916
ScaI	AGTACT	1 cut(s)	947
SchI	GAGTC	4 cut(s)	13, 1237, 1721, 1744
SduI	GDGCHC	3 cut(s)	619, 1048, 1802
SexAI	ACCWGGT	1 cut(s)	1144
SfaNI	GCATC	6 cut(s)	79, 100, 480, 562, 1282, 1586
SfcI	CTRYAG	1 cut(s)	963
SinI	GGWCC	6 cut(s)	357, 819, 1221, 1448, 1493, 1613
SmiMI	CAYNNNNRTG	3 cut(s)	543, 1425, 1653
SmlI	CTYRAG	3 cut(s)	103, 124, 977
SmoI	CTYRAG	3 cut(s)	103, 124, 977
SsiI	CCGC	6 cut(s)	184, 326, 917, 1718, 1809, 2049
SspI	AATATT	1 cut(s)	876
SspMI	CTAG	1 cut(s)	1259
SstI	GAGCTC	1 cut(s)	1048
StyI	CCWWGG	3 cut(s)	11, 822, 1426
TaaI	ACNGT	8 cut(s)	515, 526, 590, 651, 1196, 1413, 1522, 2019
TaiI	ACGT	2 cut(s)	810, 2196
TaqI	TCGA	3 cut(s)	712, 1051, 1686
TaqII	GACCGA	1 cut(s)	1973
TatI	WGTACW	4 cut(s)	651, 945, 1191, 2097
TauI	GCSGC	1 cut(s)	919
TfiI	GAWTC	5 cut(s)	602, 1072, 1094, 2316, 2392
TscAI	CASTG	9 cut(s)	349, 400, 654, 661, 750, 1122, 1180, 1566, 1777
TseFI	GTSAC	2 cut(s)	995, 2338
TseI	GCWGC	5 cut(s)	707, 962, 971, 2120, 2330
Tsp45I	GTSAC	2 cut(s)	995, 2338
TspDTI	ATGAA	8 cut(s)	12, 758, 873, 1107, 1716, 2145, 2381, 2385
TspGWI	ACGGA	1 cut(s)	766
TspRI	CASTG	9 cut(s)	349, 400, 654, 661, 750, 1122, 1180, 1566, 1777
Vha464I	CTTAAG	1 cut(s)	977
VpaK11BI	GGWCC	6 cut(s)	357, 819, 1221, 1448, 1493, 1613
VspI	ATTAAT	2 cut(s)	1791, 2072
XapI	RAATTY	3 cut(s)	232, 1780, 2353
XceI	RCATGY	1 cut(s)	663
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1149, 1503, 1655
XspI	CTAG	1 cut(s)	1259
ZrmI	AGTACT	1 cut(s)	947
Zsp2I	ATGCAT	1 cut(s)	2206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.