Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001229

Physical Location & Seq

Genomic Coordinates Reverse (-)

11981401 .. 11988402

Gene Structure 7002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1151600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2547 bp

ATGATATTGCATGTGGAAAGCGATTCAATGGAGAAACATTTAGGGGATATACTATTTGGTCGTTCTGAAGGGGCCTTCAAGATTCCATCTGCTAATAATCACCATGCATCAAGTGATACTAGCTTGTTTTTGAGCTCATTACCTGTCCTTCCACATGGAAAGTTGAAATTTCCTGTTTCGGAGCATTTTGGTCAGTCTGTTGATGATAGTTTACCCAAATTAAACAATGTTGAACAAGAAAATGAGACTAAGGATTCACTTGAAAGCGATGAATCAAAGGCATTCGGGGTCATGCTTCCTGATGATGAAGATGATCTCTTAGCAGGCATAACAGATGATTTTGATCTAAGTCGATTGCCTAATCAGCTGGAGGAGATGGAAGAGTATGATCTGTTTGGAAGTGGAGGTGGTATGGAGTTGGATTTTGAATCCCAGGATAGCCTCGGTATTGGCATGTCAAAACTAGGCATATCTGATGGGGTTGTTCCAAATGGGATTGGTCATTATGCTCTTCCAAATGGTGTTGGAGCTGTGGCTGGGGAGCACCCGTATGGAGAGCATCCATCTAGAACCTTGTTTGTTAGAAATATCAACAGTAACGTCGAGGACTCTGAATTGAGAACTCTATTTGAGCAATTTGGGGATATCAGAACTTTATACACTGCATGCAAGCACAGGGGCTTTGTGATGATATCTTACTACGACATCCGAGCCGCTCGCACTGCAATGCGTGCGTTACAGAACAAGCCCTTGAGACGGAGGAAACTCGACATTCATTTTTCTATTCCCAAGGACAACCCGTCAGAAAAGGATATCAACCAAGGAACTCTTGTGGTGTTCAACTTGGATGCATCAGTGTCAAATGATGACCTTCGACAGATATTTGGGGCTTATGGGGAAGTCAAAGAGATCCGGGAAACCCCACACAAGAGACACCATAAATTCATAGAGTTCTATGATGTTAGAGCTGCAGAGGCAGCTTTAAGGGCATTAAATAGGAGTGACATAGCTGGGAAACGCATAAAGCTCGAACCCAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTTACTCAAGAGCTTGAACAAGATGAAACTTGGAGTTTCCGACATCAAGTGGGTTCACCTGTGACCAACTCTCCTCCAGGTACCTGGGCGCATATTGGAAGCCCCATTGAGCATAACCAGTATGCTTTTAGTAAATCCCCGGGTCTGGGAAGCCTCAGTCCAGACAGCAACCATTTGCCTGGGTTAGCTTCAATTCTCCCAGCTCATTTGTCTAACTCTCCTAAGATTGCACCTATTGGTAAGGACCAAGGAAGGGCAAACCATATAAATCCGATGTATAGCAACTCTCCATCAACACAAGGAGCAGCGTATCAGCATTCTCATTCCTATCCAGAGCAGAAATTAAGTGCAAGTCCAGGTCCCATCTCATTGGGCGAGTCAAATTCAACTTCATCTGGGATTGGAACATTGTCAGGTCCTCAGTTTCTCTGGGGCAGTCCATCTCCATCTCCTTATGCTGACCCTAGTTCTTCTGCCTGGCCAACCTTGTCTGCGGGGCATCCATTTTCATCTAGTGGACAGGGGCAAGGCTTTTCATCGACGAGCCGGCATGGCTCTTTGCTCAGTTCACACAACCATCATGTGGGATCTGCTCCATCCGGTGGTGTTCCTCTAGAGAGGCATTTTGGCTTTTTCCCAGAGTCACCAGAAACATCCTTCATGAATCCAGTGTTTGGGGGCATGGGTTTAAGTCGCAACAGTGGGAATTACATGATGAACATGGGTGGTCGTGCAACTTTGAGTGTTGGTGTTGGTCTTCCAGGAAACGTTACTGAAAATGGCTCACCTAATTTCAGAATGATGTCAATGCCAAAGCATGGTCCTGTGTACCTTGGGAATGGTTCATATACTGGACCGGCAGCAACCATCAGTGAGATGTTGGCTGATCATGGTAGAAGTCGGCGAATAGAGAATCCTGGGAATCAGATGGATAGTAAAAAGCAGTATCAACTTGATATAGATAAAATTATCAGTGGGGAGGATACTAGGACTACTTTAATGATTAAAAACATCCCGAATAAGTACACTTCCAAAATGCTGCTGGCTGCTATCGATGAAAACCACCGTGGTACATACGACTTTCTCTACCTGCCAATTGACTTTAAGAATAAGTGCAATGTGGGTTATGCCTTCATCAATATGGTGTCTCCTACCCACATTATAGCCTTCTATGAGGCATTAAATGGGAAGAAGTGGGAGAAATTTAACAGTGAAAAAGTTGCTTCATTGGCATATGCACGAATCCAGGGCAAAGCTGCGCTTGTGACTCATTTTCAGAATTCAAGCCTAATGAATGAGGACAAGCGTTGCCGGCCCATTCTCTTCCACTCAGAGGGCCAAGAGACTACTGACCAGGAAAATTACCTTTCCAGAAATTTGAACATATGTATCCGGCAGCCAGATGGCTCTTACTCAGGCGACTCATTGGACAGCCCAAAGGGGGATCTGGATGAGAAGCCAGATAACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

849

Amino Acids

92.94

Weight (kDa)

5.94

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	192 - 256	1.8e-10	RNA recognition motif
RRM_5	PF13893	274 - 367	3.2e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	277 - 342	3e-11	RNA recognition motif
RRM_2	PF04059	688 - 784	2.8e-54	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29400 AT1G29400 AT1G29400
fragaria_vesca	FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250
malus_domestica	MD05G1291700.v1.1 MD09G1151600.v1.1 MD10G1267700.v1.1 MD17G1139300.v1.1
prunus_persica	Prupe.3G172900_v2.0.a1 Prupe.4G073800_v2.0.a1
pyrus_communis	pycom05g26820 pycom09g07120 pycom10g22380 pycom17g13240
rosa_chinensis	RchiOBHm_Chr2g0151511 RchiOBHm_Chr5g0012911
rosa_laevigata	RLG00000020556 RLG00000031968
rosa_multiflora	Rmu_sc0000940.1_g000021 Rmu_sc0016318.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063670 Rroxscaffold_2G00096390
rosa_rugosa	Rorug02G0426600 Rorug02G0426700 Rorug02G0426800 Rorug05G0005100 Rorug05G0005100 Rorug05G0005100
rosa_samantha	Rh2AG487500 Rh2BG499900 Rh2CG474000 Rh2DG511100 Rh5AG099400 Rh5BG096000 Rh5CG108300 Rh5DG094700
rosa_wichuraiana	Rw2G039960 Rw5G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2172
Acc65I	GGTACC	1 cut(s)	1154
AccB1I	GGYRCC	1 cut(s)	1154
AccB7I	CCANNNNNTGG	4 cut(s)	1657, 1676, 1748, 1892
AccBSI	CCGCTC	1 cut(s)	716
AciI	CCGC	3 cut(s)	714, 1039, 1568
AclI	AACGTT	1 cut(s)	1842
AclWI	GGATC	3 cut(s)	904, 1669, 2526
AcoI	YGGCCR	1 cut(s)	1553
AcsI	RAATTY	6 cut(s)	167, 941, 1456, 2276, 2353, 2449
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	4 cut(s)	1156, 1904, 2099, 2146
AhdI	GACNNNNNGTC	1 cut(s)	799
Alw21I	GWGCWC	3 cut(s)	137, 546, 1054
Alw26I	GTCTC	5 cut(s)	239, 748, 925, 2226, 2411
AlwI	GGATC	3 cut(s)	904, 1669, 2526
Ama87I	CYCGRG	1 cut(s)	1213
AoxI	GGCC	4 cut(s)	72, 1553, 2387, 2410
ApeKI	GCWGC	8 cut(s)	968, 977, 1379, 1934, 2113, 2120, 2330, 2470
ApoI	RAATTY	6 cut(s)	167, 941, 1456, 2276, 2353, 2449
Asp718I	GGTACC	1 cut(s)	1154
AspLEI	GCGC	2 cut(s)	1165, 2335
AspS9I	GGNCC	8 cut(s)	72, 1318, 1433, 1490, 1895, 1928, 2388, 2410
AsuC2I	CCSGG	3 cut(s)	914, 1214, 1215
AsuHPI	GGTGA	4 cut(s)	92, 1122, 1710, 1851
AvaI	CYCGRG	1 cut(s)	1213
AvaII	GGWCC	5 cut(s)	1318, 1433, 1490, 1895, 1928
BaeI	ACNNNNGTAYC	2 cut(s)	2446, 2479
BalI	TGGCCA	1 cut(s)	1555
BanI	GGYRCC	1 cut(s)	1154
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	1823
Bbv12I	GWGCWC	3 cut(s)	137, 546, 1054
BbvI	GCAGC	8 cut(s)	955, 989, 1391, 1946, 2100, 2107, 2317, 2482
BcgI	CGANNNNNNTGC	2 cut(s)	1009, 1043
BciVI	GTATCC	2 cut(s)	2050, 2474
BclI	TGATCA	1 cut(s)	1960
BcnI	CCSGG	3 cut(s)	914, 1214, 1215
BcoDI	GTCTC	5 cut(s)	239, 748, 925, 2226, 2411
BfaI	CTAG	7 cut(s)	120, 464, 567, 1539, 1587, 1688, 2061
BfmI	CTRYAG	1 cut(s)	969
BfuAI	ACCTGC	1 cut(s)	2172
BfuI	GTATCC	2 cut(s)	2050, 2474
BglI	GCCNNNNNGGC	1 cut(s)	1626
Bme18I	GGWCC	5 cut(s)	1318, 1433, 1490, 1895, 1928
BmeRI	GACNNNNNGTC	1 cut(s)	799
BmeT110I	CYCGRG	1 cut(s)	1213
BmgT120I	GGNCC	8 cut(s)	72, 1318, 1433, 1490, 1895, 1928, 2388, 2410
BmiI	GGNNCC	3 cut(s)	73, 1156, 1435
BmsI	GCATC	6 cut(s)	116, 568, 838, 860, 1056, 1582
BpiI	GAAGAC	1 cut(s)	1823
BpmI	CTGGAG	2 cut(s)	389, 1134
BpuEI	CTTGAG	2 cut(s)	772, 1065
BpuMI	CCSGG	3 cut(s)	914, 1214, 1215
Bsa29I	ATCGAT	1 cut(s)	2127
BsaAI	YACGTR	1 cut(s)	1055
BsaBI	GATNNNNATC	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	1673
BsaXI	ACNNNNNCTCC	4 cut(s)	533, 563, 1129, 1159
Bse118I	RCCGGY	3 cut(s)	1620, 1930, 2385
Bse1I	ACTGG	3 cut(s)	1192, 1742, 1930
Bse3DI	GCAATG	2 cut(s)	732, 2197
Bse8I	GATNNNNATC	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	2127
BseGI	GGATG	8 cut(s)	559, 705, 853, 1573, 1670, 1727, 2085, 2530
BseJI	GATNNNNATC	1 cut(s)	342
BseMI	GCAATG	2 cut(s)	732, 2197
BseMII	CTCAG	5 cut(s)	1243, 1508, 1651, 2418, 2502
BseNI	ACTGG	3 cut(s)	1192, 1742, 1930
BseRI	GAGGAG	2 cut(s)	386, 1137
BseXI	GCAGC	8 cut(s)	955, 989, 1391, 1946, 2100, 2107, 2317, 2482
BseYI	CCCAGC	4 cut(s)	536, 1010, 1034, 1273
BshFI	GGCC	4 cut(s)	74, 1555, 2389, 2412
BshNI	GGYRCC	1 cut(s)	1154
BshVI	ATCGAT	1 cut(s)	2127
BsiHKAI	GWGCWC	3 cut(s)	137, 546, 1054
BsiHKCI	CYCGRG	1 cut(s)	1213
BsiSI	CCGG	7 cut(s)	913, 1214, 1621, 1674, 1931, 2386, 2467
BslFI	GGGAC	1 cut(s)	1419
BsmAI	GTCTC	5 cut(s)	239, 748, 925, 2226, 2411
BsmBI	CGTCTC	1 cut(s)	748
BsmFI	GGGAC	1 cut(s)	1419
BsmI	GAATGC	2 cut(s)	281, 1390
BsnI	GGCC	4 cut(s)	74, 1555, 2389, 2412
BsoBI	CYCGRG	1 cut(s)	1213
Bsp1286I	GDGCHC	3 cut(s)	137, 546, 1054
Bsp143I	GATC	7 cut(s)	313, 343, 388, 909, 1661, 1960, 2518
BspACI	CCGC	3 cut(s)	714, 1039, 1568
BspANI	GGCC	4 cut(s)	74, 1555, 2389, 2412
BspCNI	CTCAG	5 cut(s)	1242, 1507, 1650, 2417, 2501
BspDI	ATCGAT	1 cut(s)	2127
BspHI	TCATGA	1 cut(s)	1734
BspLI	GGNNCC	3 cut(s)	73, 1156, 1435
BspMAI	CTGCAG	1 cut(s)	973
BspMI	ACCTGC	1 cut(s)	2172
BspPI	GGATC	3 cut(s)	904, 1669, 2526
BspQI	GCTCTTC	1 cut(s)	516
BspT107I	GGYRCC	1 cut(s)	1154
BsrBI	CCGCTC	1 cut(s)	716
BsrDI	GCAATG	2 cut(s)	732, 2197
BsrFI	RCCGGY	3 cut(s)	1620, 1930, 2385
BsrI	ACTGG	3 cut(s)	1192, 1742, 1930
BssAI	RCCGGY	3 cut(s)	1620, 1930, 2385
BssMI	GATC	7 cut(s)	313, 343, 388, 909, 1661, 1960, 2518
BssT1I	CCWWGG	4 cut(s)	789, 820, 1321, 1906
Bst4CI	ACNGT	5 cut(s)	596, 1775, 2141, 2285, 2543
Bst6I	CTCTTC	3 cut(s)	375, 516, 2402
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstBAI	YACGTR	1 cut(s)	1055
BstC8I	GCNNGC	8 cut(s)	325, 667, 671, 718, 732, 1622, 2118, 2387
BstDEI	CTNAG	9 cut(s)	249, 319, 347, 1229, 1296, 1494, 1637, 2404, 2488
BstDSI	CCRYGG	1 cut(s)	2140
BstF5I	GGATG	8 cut(s)	559, 705, 853, 1573, 1670, 1727, 2085, 2530
BstHHI	GCGC	2 cut(s)	1165, 2335
BstKTI	GATC	7 cut(s)	316, 346, 391, 912, 1664, 1963, 2521
BstMAI	GTCTC	5 cut(s)	239, 748, 925, 2226, 2411
BstMBI	GATC	7 cut(s)	313, 343, 388, 909, 1661, 1960, 2518
BstMWI	GCNNNNNNNGC	9 cut(s)	364, 722, 731, 974, 977, 986, 1626, 2303, 2386
BstNSI	RCATGY	3 cut(s)	14, 457, 669
BstSFI	CTRYAG	1 cut(s)	969
BstV1I	GCAGC	8 cut(s)	955, 989, 1391, 1946, 2100, 2107, 2317, 2482
BstV2I	GAAGAC	1 cut(s)	1823
BstX2I	RGATCY	3 cut(s)	909, 1661, 2518
BstXI	CCANNNNNNTGG	3 cut(s)	1158, 1253, 1444
BstYI	RGATCY	3 cut(s)	909, 1661, 2518
Bsu15I	ATCGAT	1 cut(s)	2127
BsuI	GTATCC	2 cut(s)	2050, 2474
BsuRI	GGCC	4 cut(s)	74, 1555, 2389, 2412
BsuTUI	ATCGAT	1 cut(s)	2127
BtgI	CCRYGG	1 cut(s)	2140
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	8 cut(s)	559, 705, 853, 1573, 1670, 1727, 2085, 2530
BtsI	GCAGTG	2 cut(s)	660, 720
BtsIMutI	CAGTG	8 cut(s)	660, 720, 861, 1749, 1780, 1951, 2053, 2290
BveI	ACCTGC	1 cut(s)	2172
Cac8I	GCNNGC	8 cut(s)	325, 667, 671, 718, 732, 1622, 2118, 2387
CciI	TCATGA	1 cut(s)	1734
CfoI	GCGC	2 cut(s)	1165, 2335
Cfr10I	RCCGGY	3 cut(s)	1620, 1930, 2385
Cfr13I	GGNCC	8 cut(s)	72, 1318, 1433, 1490, 1895, 1928, 2388, 2410
Cfr9I	CCCGGG	1 cut(s)	1213
ClaI	ATCGAT	1 cut(s)	2127
Csp6I	GTAC	4 cut(s)	1155, 1903, 2098, 2145
CviQI	GTAC	4 cut(s)	1155, 1903, 2098, 2145
DdeI	CTNAG	9 cut(s)	249, 319, 347, 1229, 1296, 1494, 1637, 2404, 2488
DpnI	GATC	7 cut(s)	315, 345, 390, 911, 1663, 1962, 2520
DpnII	GATC	7 cut(s)	313, 343, 388, 909, 1661, 1960, 2518
DriI	GACNNNNNGTC	1 cut(s)	799
EaeI	YGGCCR	1 cut(s)	1553
Eam1104I	CTCTTC	3 cut(s)	375, 516, 2402
Eam1105I	GACNNNNNGTC	1 cut(s)	799
EarI	CTCTTC	3 cut(s)	375, 516, 2402
Ecl136II	GAGCTC	1 cut(s)	135
Eco130I	CCWWGG	4 cut(s)	789, 820, 1321, 1906
Eco24I	GRGCYC	1 cut(s)	137
Eco32I	GATATC	3 cut(s)	646, 693, 814
Eco47I	GGWCC	5 cut(s)	1318, 1433, 1490, 1895, 1928
Eco53kI	GAGCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	1213
EcoICRI	GAGCTC	1 cut(s)	135
EcoO109I	RGGNCCY	3 cut(s)	72, 1433, 1490
EcoRI	GAATTC	1 cut(s)	2353
EcoRV	GATATC	3 cut(s)	646, 693, 814
EcoT14I	CCWWGG	4 cut(s)	789, 820, 1321, 1906
EcoT22I	ATGCAT	2 cut(s)	109, 853
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	4 cut(s)	789, 820, 1321, 1906
Esp3I	CGTCTC	1 cut(s)	748
FalI	AAGNNNNNCTT	4 cut(s)	813, 845, 2319, 2351
FaqI	GGGAC	1 cut(s)	1419
FauI	CCCGC	1 cut(s)	1561
FauNDI	CATATG	2 cut(s)	2308, 2459
FbaI	TGATCA	1 cut(s)	1960
FokI	GGATG	8 cut(s)	546, 692, 860, 1560, 1657, 1714, 2072, 2537
FriOI	GRGCYC	1 cut(s)	137
FspBI	CTAG	7 cut(s)	120, 464, 567, 1539, 1587, 1688, 2061
GlaI	GCGC	2 cut(s)	1164, 2334
GsaI	CCCAGC	4 cut(s)	540, 1014, 1038, 1277
GsuI	CTGGAG	2 cut(s)	389, 1134
HaeIII	GGCC	4 cut(s)	74, 1555, 2389, 2412
HapII	CCGG	7 cut(s)	913, 1214, 1621, 1674, 1931, 2386, 2467
HhaI	GCGC	2 cut(s)	1165, 2335
Hin6I	GCGC	2 cut(s)	1163, 2333
HinP1I	GCGC	2 cut(s)	1163, 2333
HpaII	CCGG	7 cut(s)	913, 1214, 1621, 1674, 1931, 2386, 2467
HphI	GGTGA	4 cut(s)	92, 1122, 1710, 1851
Hpy166II	GTNNAC	6 cut(s)	212, 1130, 1592, 1643, 1903, 2100
Hpy8I	GTNNAC	6 cut(s)	212, 1130, 1592, 1643, 1903, 2100
Hpy99I	CGWCG	2 cut(s)	605, 1618
HpyAV	CCTTC	8 cut(s)	62, 85, 158, 881, 1320, 1741, 2215, 2251
HpyCH4III	ACNGT	5 cut(s)	596, 1775, 2141, 2285, 2543
HpyCH4IV	ACGT	3 cut(s)	600, 1054, 1842
HpyF10VI	GCNNNNNNNGC	9 cut(s)	364, 722, 731, 974, 977, 986, 1626, 2303, 2386
HpyF3I	CTNAG	9 cut(s)	249, 319, 347, 1229, 1296, 1494, 1637, 2404, 2488
HpySE526I	ACGT	3 cut(s)	600, 1054, 1842
HspAI	GCGC	2 cut(s)	1163, 2333
KpnI	GGTACC	1 cut(s)	1158
KroI	GCCGGC	2 cut(s)	1620, 2385
KroNI	GCCGGC	2 cut(s)	1622, 2387
Ksp22I	TGATCA	1 cut(s)	1960
Kzo9I	GATC	7 cut(s)	313, 343, 388, 909, 1661, 1960, 2518
LguI	GCTCTTC	1 cut(s)	516
LmnI	GCTCC	6 cut(s)	181, 527, 541, 1049, 1376, 1672
Lsp1109I	GCAGC	8 cut(s)	955, 989, 1391, 1946, 2100, 2107, 2317, 2482
LweI	GCATC	6 cut(s)	116, 568, 838, 860, 1056, 1582
MaeI	CTAG	7 cut(s)	120, 464, 567, 1539, 1587, 1688, 2061
MaeII	ACGT	3 cut(s)	600, 1054, 1842
MaeIII	GTNAC	7 cut(s)	596, 735, 1001, 1135, 1716, 1843, 2338
MalI	GATC	7 cut(s)	315, 345, 390, 911, 1663, 1962, 2520
MbiI	CCGCTC	1 cut(s)	716
MboI	GATC	7 cut(s)	313, 343, 388, 909, 1661, 1960, 2518
MboII	GAAGA	7 cut(s)	320, 392, 503, 1536, 1823, 2275, 2389
MfeI	CAATTG	1 cut(s)	2169
MflI	RGATCY	3 cut(s)	909, 1661, 2518
MhlI	GDGCHC	3 cut(s)	137, 546, 1054
MlsI	TGGCCA	1 cut(s)	1555
MluNI	TGGCCA	1 cut(s)	1555
MlyI	GAGTC	5 cut(s)	602, 1460, 1724, 2335, 2489
MmeI	TCCRAC	3 cut(s)	399, 505, 1138
Mox20I	TGGCCA	1 cut(s)	1555
Mph1103I	ATGCAT	2 cut(s)	109, 853
MroNI	GCCGGC	2 cut(s)	1620, 2385
MscI	TGGCCA	1 cut(s)	1555
MslI	CAYNNNNRTG	3 cut(s)	549, 725, 2213
Msp20I	TGGCCA	1 cut(s)	1555
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	7 cut(s)	913, 1214, 1621, 1674, 1931, 2386, 2467
MunI	CAATTG	1 cut(s)	2169
Mva1269I	GAATGC	2 cut(s)	281, 1390
MwoI	GCNNNNNNNGC	9 cut(s)	364, 722, 731, 974, 977, 986, 1626, 2303, 2386
NaeI	GCCGGC	2 cut(s)	1622, 2387
NciI	CCSGG	3 cut(s)	914, 1214, 1215
NdeI	CATATG	2 cut(s)	2308, 2459
NdeII	GATC	7 cut(s)	313, 343, 388, 909, 1661, 1960, 2518
NgoMIV	GCCGGC	2 cut(s)	1620, 2385
NlaIV	GGNNCC	3 cut(s)	73, 1156, 1435
NmuCI	GTSAC	4 cut(s)	1001, 1135, 1716, 2338
NsiI	ATGCAT	2 cut(s)	109, 853
NspI	RCATGY	3 cut(s)	14, 457, 669
PaeI	GCATGC	1 cut(s)	669
PagI	TCATGA	1 cut(s)	1734
PciSI	GCTCTTC	1 cut(s)	516
PctI	GAATGC	2 cut(s)	281, 1390
PdiI	GCCGGC	2 cut(s)	1622, 2387
PfeI	GAWTC	9 cut(s)	23, 82, 254, 272, 428, 1738, 1987, 1996, 2316
PflMI	CCANNNNNTGG	4 cut(s)	1657, 1676, 1748, 1892
PfoI	TCCNGGA	2 cut(s)	912, 1834
PleI	GAGTC	5 cut(s)	602, 1459, 1723, 2335, 2489
PpsI	GAGTC	5 cut(s)	602, 1459, 1723, 2335, 2489
Ppu21I	YACGTR	1 cut(s)	1055
PpuMI	RGGWCCY	2 cut(s)	1433, 1490
Psp124BI	GAGCTC	1 cut(s)	137
Psp1406I	AACGTT	1 cut(s)	1842
Psp5II	RGGWCCY	2 cut(s)	1433, 1490
PspFI	CCCAGC	4 cut(s)	536, 1010, 1034, 1273
PspN4I	GGNNCC	3 cut(s)	73, 1156, 1435
PspPI	GGNCC	8 cut(s)	72, 1318, 1433, 1490, 1895, 1928, 2388, 2410
PspPPI	RGGWCCY	2 cut(s)	1433, 1490
PstI	CTGCAG	1 cut(s)	973
PsuI	RGATCY	3 cut(s)	909, 1661, 2518
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	4 cut(s)	1156, 1904, 2099, 2146
RsaNI	GTAC	4 cut(s)	1155, 1903, 2098, 2145
RseI	CAYNNNNRTG	3 cut(s)	549, 725, 2213
SacI	GAGCTC	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	516
Sau3AI	GATC	7 cut(s)	313, 343, 388, 909, 1661, 1960, 2518
Sau96I	GGNCC	8 cut(s)	72, 1318, 1433, 1490, 1895, 1928, 2388, 2410
SchI	GAGTC	5 cut(s)	602, 1460, 1724, 2335, 2489
SduI	GDGCHC	3 cut(s)	137, 546, 1054
SfaNI	GCATC	6 cut(s)	116, 568, 838, 860, 1056, 1582
SfcI	CTRYAG	1 cut(s)	969
SinI	GGWCC	5 cut(s)	1318, 1433, 1490, 1895, 1928
SmaI	CCCGGG	1 cut(s)	1215
SmiMI	CAYNNNNRTG	3 cut(s)	549, 725, 2213
SmlI	CTYRAG	2 cut(s)	751, 1080
SmoI	CTYRAG	2 cut(s)	751, 1080
SphI	GCATGC	1 cut(s)	669
SsiI	CCGC	3 cut(s)	714, 1039, 1568
SspMI	CTAG	7 cut(s)	120, 464, 567, 1539, 1587, 1688, 2061
SstI	GAGCTC	1 cut(s)	137
StyI	CCWWGG	4 cut(s)	789, 820, 1321, 1906
TaaI	ACNGT	5 cut(s)	596, 1775, 2141, 2285, 2543
TaiI	ACGT	3 cut(s)	603, 1057, 1845
TaqI	TCGA	7 cut(s)	352, 603, 768, 874, 1029, 1613, 2127
TatI	WGTACW	1 cut(s)	2097
TauI	GCSGC	2 cut(s)	716, 1041
TfiI	GAWTC	9 cut(s)	23, 82, 254, 272, 428, 1738, 1987, 1996, 2316
TscAI	CASTG	8 cut(s)	667, 727, 861, 1749, 1780, 1951, 2053, 2290
TseFI	GTSAC	4 cut(s)	1001, 1135, 1716, 2338
TseI	GCWGC	8 cut(s)	968, 977, 1379, 1934, 2113, 2120, 2330, 2470
Tsp45I	GTSAC	4 cut(s)	1001, 1135, 1716, 2338
TspGWI	ACGGA	1 cut(s)	772
TspMI	CCCGGG	1 cut(s)	1213
TspRI	CASTG	8 cut(s)	667, 727, 861, 1749, 1780, 1951, 2053, 2290
Van91I	CCANNNNNTGG	4 cut(s)	1657, 1676, 1748, 1892
VpaK11BI	GGWCC	5 cut(s)	1318, 1433, 1490, 1895, 1928
XapI	RAATTY	6 cut(s)	167, 941, 1456, 2276, 2353, 2449
XbaI	TCTAGA	2 cut(s)	566, 1687
XceI	RCATGY	3 cut(s)	14, 457, 669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2113
XmaI	CCCGGG	1 cut(s)	1213
XspI	CTAG	7 cut(s)	120, 464, 567, 1539, 1587, 1688, 2061
Zsp2I	ATGCAT	2 cut(s)	109, 853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.