Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001229

Physical Location & Seq

Genomic Coordinates Forward (+)

70607035 .. 70614603

Gene Structure 7569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG499900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGGAAGAGTATGATCTCTTTGGCAGTGGTGGCGGAATGGAATTGGATTTTGAATTGCAAGATAGCCTTGGTATTGGTTTGTCAAAGCTAAGCATATCTGATGGGGTTAGTCCAAATGGTATTGGTCATTATGCTCTTCCAAATGGAGCGGGAACTGTGGCTGGAGAACATCCTTATGGGGAGCATCCTTCAAGGACCTTGTTCGTTAGAAATATCAATAGTAATGTTGAGGATTCCGAATTGAGATCTCTATTTGAGCAATATGGAGATATCAGAACTTTATATACTGCGTGCAAGCATAGGGGATTTGTGATGATATCATACTATGATATCCGATCTGCTCGCACTGCAATGCGTGCATTACAGAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCCAAGGATAATCCTTCAGAAAAGGATATCAACCAAGGAACTCTTGTGGTTTTCAATTTGGATGCATCAGTGTCAAATGATGACCTTCGACAGATATTTGGGGCTTATGGAGAAGTCAAGGAGATCCGAGAAACACCACACAAGAGACACCATAAATTCATAGAGTTTTATGATGTTAGAGCTGCAGAGGTAGCTTTAAGAGCACTAAATAGGAGCGACATAGCTGGGAAACGTATAAAGCTTGAACCCAGCCGCCCTGGTGGAGCTCGAAGAAACTTGATGCAGCAACTAAGTCAAGAGCTTGACCAAGATGAAACTCGGAGTTTCCGACATCAAGTGGGTTCACCAATGACCAACTCTCCTCCAGGTACCTGGGCACAAATTGGAAGCCCCATTGAACATAATCAGCTTGGTTTTAGTAAGTCCCCAGGTCTGGGAAGCCTGAGTCCTGTAGACAGCAACAATTTACCTGGGTTAGCTTCAATTCTTCCAACTCATGTTCCTAACTCCCCAAAGATTGCACCTATTGGTAAAGACCAAGGAAGGTTGAACAATACGAGTCAGATATTTAGTAGCTCCGTTTCAACGCCAGGAGCAGCCTATTCCTTTCCTGAGCAGAAATTAAGCACTAGTCCAGGTCCCATGTCATATGGTGAGTCAAATTCAAATTCATCAGGTATTGGAACTTTGTCAGGTCCTCAGTTTCTCTGGGGAAGCCCAACTCCTTATTCCGAGCCCAAGTCTTCTGCCTGGCCAACATCATCTGTGGGACATCCGTTTTCATCTGGTGGACAGGGACAGGGTTTTCCATTCACTAGCCGGCAGAGCTCTTTCCTCAGTTCACATAACCATCATGTGGGATCTGCTCCATCTGGTGTTCCTCTGGATAGGCATTTTGGCTACTTCCCCGAATCACCTGAAACATCCTTCATGAATCCAATGTTTGGGGGCATGGGTTTAAGCCGCAACAATAGTAATTACATGATGAACATGGGTGGTCGAGCAACTATGAATGCTGGTGTTGGTCTTCCAGGAAACATTAGTGAAAATGGCTCTCCTAGTTTTAGAATGATGTCAATGCCAAAGCATAGTCCTGTGTACCTTGGGAATGGTTCTTACACTGGACCTGCAGCAACCATCAGTGAGCTATTTGCTGATCGTGGTAGGAGTCGGCGGGTTGAGAATAGTGGGAATCAAGTAGATAGCAAAAAGCAGTATCAACTTGATTTAGATAAAATTCTCCGCGGGGAAGACAGTAGGACTACTTTAATGATCAAAAACATCCCCAATAAGTACACTTCTAAAATGCTGCTGGCTGCTATAGATGAAAATCACCGGGGTACATACGATTTCCTGTACTTGCCAATCGACTTTAAGAATAAGTGCAATGTGGGTTATGCCTTCATCAATATGGTGTCTCCTTCCCACATTATAGCCTTTTATGAGGCATTTAATGGCAAGAAGTGGGAGAAGTTTAACAGTGAAAAGGTTGCTTCACTGGCTTATGCACGTATCCAGGGTAAAGCTGCCCTTGTGACTCATTTTCAGAATTCAAGCCTTATGAATGAGGACAAGCGTTGCCGGCCTATCCTCTTCCACTCGGAGGGCCAGGAGACTGGTGACGAGGAAACTTTCCTCTCCAGAAATTTGAACATATGCATACGGCAGCCAGATGGCTCTTATTTGGGTGATTCATTGGACAGCCCAAAGGGGAATCTGGATGAGAATCCAGAGAACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

717

Amino Acids

78.84

Weight (kDa)

7.08

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	67 - 131	1.1e-10	RNA recognition motif
RRM_5	PF13893	149 - 242	2.1e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	152 - 217	1.7e-10	RNA recognition motif
RRM_2	PF04059	557 - 653	4.8e-55	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29400 AT1G29400 AT1G29400
fragaria_vesca	FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250
malus_domestica	MD05G1291700.v1.1 MD09G1151600.v1.1 MD10G1267700.v1.1 MD17G1139300.v1.1
prunus_persica	Prupe.3G172900_v2.0.a1 Prupe.4G073800_v2.0.a1
pyrus_communis	pycom05g26820 pycom09g07120 pycom10g22380 pycom17g13240
rosa_chinensis	RchiOBHm_Chr2g0151511 RchiOBHm_Chr5g0012911
rosa_laevigata	RLG00000020556 RLG00000031968
rosa_multiflora	Rmu_sc0000940.1_g000021 Rmu_sc0016318.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063670 Rroxscaffold_2G00096390
rosa_rugosa	Rorug02G0426600 Rorug02G0426700 Rorug02G0426800 Rorug05G0005100 Rorug05G0005100 Rorug05G0005100
rosa_samantha	Rh2AG487500 Rh2BG499900 Rh2CG474000 Rh2DG511100 Rh5AG099400 Rh5BG096000 Rh5CG108300 Rh5DG094700
rosa_wichuraiana	Rw2G039960 Rw5G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1546
Acc65I	GGTACC	1 cut(s)	779
AccB1I	GGYRCC	1 cut(s)	779
AccB7I	CCANNNNNTGG	2 cut(s)	1267, 1355
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	864
AccII	CGCG	1 cut(s)	1656
AciI	CCGC	7 cut(s)	33, 149, 664, 1375, 1585, 1654, 1656
AclWI	GGATC	2 cut(s)	529, 1279
AcoI	YGGCCR	1 cut(s)	1163
AcsI	RAATTY	6 cut(s)	566, 1072, 1078, 1647, 1960, 2056
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	5 cut(s)	781, 1511, 1706, 1753, 1769
AfiI	CCNNNNNNNGG	5 cut(s)	844, 845, 1267, 1355, 2014
AhlI	ACTAGT	1 cut(s)	1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	1123, 1155
Alw21I	GWGCWC	3 cut(s)	616, 679, 1241
Alw26I	GTCTC	4 cut(s)	373, 550, 1833, 2018
AlwI	GGATC	2 cut(s)	529, 1279
AoxI	GGCC	3 cut(s)	1163, 1994, 2017
ApeKI	GCWGC	8 cut(s)	593, 694, 1007, 1541, 1720, 1727, 1937, 2077
ApoI	RAATTY	6 cut(s)	566, 1072, 1078, 1647, 1960, 2056
Asp718I	GGTACC	1 cut(s)	779
AspS9I	GGNCC	5 cut(s)	195, 1049, 1106, 1535, 2017
AsuC2I	CCSGG	1 cut(s)	1748
AsuHPI	GGTGA	6 cut(s)	747, 1076, 1317, 1736, 2042, 2111
AvaII	GGWCC	4 cut(s)	195, 1049, 1106, 1535
BaeGI	GKGCMC	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	1165
BanI	GGYRCC	1 cut(s)	779
BanII	GRGCYC	3 cut(s)	679, 1149, 1241
BbsI	GAAGAC	3 cut(s)	1146, 1430, 1668
Bbv12I	GWGCWC	3 cut(s)	616, 679, 1241
BbvI	GCAGC	8 cut(s)	580, 706, 1019, 1553, 1707, 1714, 1924, 2089
BccI	CCATC	5 cut(s)	95, 1269, 1288, 1556, 2078
BceAI	ACGGC	1 cut(s)	2090
BciVI	GTATCC	1 cut(s)	1934
BclI	TGATCA	1 cut(s)	1683
BcnI	CCSGG	1 cut(s)	1748
BcoDI	GTCTC	4 cut(s)	373, 550, 1833, 2018
BcuI	ACTAGT	1 cut(s)	1040
BfaI	CTAG	3 cut(s)	1041, 1227, 1470
BfmI	CTRYAG	4 cut(s)	594, 861, 1539, 1731
BfuAI	ACCTGC	1 cut(s)	1546
BfuI	GTATCC	1 cut(s)	1934
BglII	AGATCT	1 cut(s)	245
BlpI	GCTNAGC	1 cut(s)	89
Bme18I	GGWCC	4 cut(s)	195, 1049, 1106, 1535
BmgT120I	GGNCC	5 cut(s)	195, 1049, 1106, 1535, 2017
BmiI	GGNNCC	2 cut(s)	781, 1051
BmsI	GCATC	4 cut(s)	193, 463, 485, 681
BpiI	GAAGAC	3 cut(s)	1146, 1430, 1668
BpmI	CTGGAG	3 cut(s)	183, 759, 2035
Bpu10I	CCTNAGC	1 cut(s)	1023
Bpu1102I	GCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	1748
BsaAI	YACGTR	1 cut(s)	1922
BsaBI	GATNNNNATC	2 cut(s)	1740, 2136
BsaXI	ACNNNNNCTCC	2 cut(s)	754, 784
Bsc4I	CCNNNNNNNGG	5 cut(s)	844, 845, 1267, 1355, 2014
Bse118I	RCCGGY	2 cut(s)	1230, 1992
Bse1I	ACTGG	3 cut(s)	1537, 1914, 2032
Bse3DI	GCAATG	2 cut(s)	357, 1804
Bse8I	GATNNNNATC	2 cut(s)	1740, 2136
BseGI	GGATG	7 cut(s)	169, 184, 478, 1183, 1334, 1692, 2137
BseJI	GATNNNNATC	2 cut(s)	1740, 2136
BseLI	CCNNNNNNNGG	5 cut(s)	844, 845, 1267, 1355, 2014
BseMI	GCAATG	2 cut(s)	357, 1804
BseMII	CTCAG	4 cut(s)	845, 1014, 1124, 1261
BseNI	ACTGG	3 cut(s)	1537, 1914, 2032
BseRI	GAGGAG	1 cut(s)	762
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	8 cut(s)	580, 706, 1019, 1553, 1707, 1714, 1924, 2089
BseYI	CCCAGC	2 cut(s)	635, 659
Bsh1236I	CGCG	1 cut(s)	1656
BshFI	GGCC	3 cut(s)	1165, 1996, 2019
BshNI	GGYRCC	1 cut(s)	779
BsiHKAI	GWGCWC	3 cut(s)	616, 679, 1241
BsiSI	CCGG	3 cut(s)	1231, 1747, 1993
BslFI	GGGAC	4 cut(s)	820, 1035, 1194, 1221
BslI	CCNNNNNNNGG	5 cut(s)	844, 845, 1267, 1355, 2014
BsmAI	GTCTC	4 cut(s)	373, 550, 1833, 2018
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	4 cut(s)	820, 1035, 1194, 1221
BsmI	GAATGC	1 cut(s)	1429
BsnI	GGCC	3 cut(s)	1165, 1996, 2019
Bsp1286I	GDGCHC	5 cut(s)	616, 679, 790, 1149, 1241
Bsp143I	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	7 cut(s)	33, 149, 664, 1375, 1585, 1654, 1656
BspANI	GGCC	3 cut(s)	1165, 1996, 2019
BspCNI	CTCAG	4 cut(s)	846, 1015, 1123, 1260
BspFNI	CGCG	1 cut(s)	1656
BspHI	TCATGA	1 cut(s)	1341
BspLI	GGNNCC	2 cut(s)	781, 1051
BspMAI	CTGCAG	2 cut(s)	598, 1543
BspMI	ACCTGC	1 cut(s)	1546
BspPI	GGATC	2 cut(s)	529, 1279
BspQI	GCTCTTC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	779
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	357, 1804
BsrFI	RCCGGY	2 cut(s)	1230, 1992
BsrI	ACTGG	3 cut(s)	1537, 1914, 2032
BssAI	RCCGGY	2 cut(s)	1230, 1992
BssMI	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
BssT1I	CCWWGG	5 cut(s)	67, 414, 445, 949, 1513
Bst4CI	ACNGT	3 cut(s)	157, 1667, 1892
Bst6I	CTCTTC	2 cut(s)	141, 2009
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	1922
BstC8I	GCNNGC	7 cut(s)	292, 296, 343, 357, 1232, 1725, 1994
BstDEI	CTNAG	6 cut(s)	89, 701, 854, 1023, 1110, 1247
BstDSI	CCRYGG	1 cut(s)	1654
BstF5I	GGATG	7 cut(s)	169, 184, 478, 1183, 1334, 1692, 2137
BstFNI	CGCG	1 cut(s)	1656
BstKTI	GATC	7 cut(s)	16, 248, 338, 537, 1274, 1570, 1686
BstMAI	GTCTC	4 cut(s)	373, 550, 1833, 2018
BstMBI	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 347, 356, 602, 611, 1236, 1910, 1993
BstSFI	CTRYAG	4 cut(s)	594, 861, 1539, 1731
BstSLI	GKGCMC	1 cut(s)	790
BstUI	CGCG	1 cut(s)	1656
BstV1I	GCAGC	8 cut(s)	580, 706, 1019, 1553, 1707, 1714, 1924, 2089
BstV2I	GAAGAC	3 cut(s)	1146, 1430, 1668
BstX2I	RGATCY	3 cut(s)	245, 534, 1271
BstXI	CCANNNNNNTGG	2 cut(s)	783, 2027
BstYI	RGATCY	3 cut(s)	245, 534, 1271
BsuI	GTATCC	1 cut(s)	1934
BsuRI	GGCC	3 cut(s)	1165, 1996, 2019
BtgI	CCRYGG	1 cut(s)	1654
BtsCI	GGATG	7 cut(s)	169, 184, 478, 1183, 1334, 1692, 2137
BtsI	GCAGTG	2 cut(s)	31, 345
BtsIMutI	CAGTG	7 cut(s)	31, 345, 486, 1530, 1558, 1897, 1907
BveI	ACCTGC	1 cut(s)	1546
Cac8I	GCNNGC	7 cut(s)	292, 296, 343, 357, 1232, 1725, 1994
CciI	TCATGA	1 cut(s)	1341
Cfr10I	RCCGGY	2 cut(s)	1230, 1992
Cfr13I	GGNCC	5 cut(s)	195, 1049, 1106, 1535, 2017
Cfr42I	CCGCGG	1 cut(s)	1657
Csp6I	GTAC	5 cut(s)	780, 1510, 1705, 1752, 1768
CviAII	CATG	7 cut(s)	908, 1054, 1265, 1342, 1363, 1393, 1402
CviQI	GTAC	5 cut(s)	780, 1510, 1705, 1752, 1768
DdeI	CTNAG	6 cut(s)	89, 701, 854, 1023, 1110, 1247
DpnI	GATC	7 cut(s)	15, 247, 337, 536, 1273, 1569, 1685
DpnII	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
EaeI	YGGCCR	1 cut(s)	1163
Eam1104I	CTCTTC	2 cut(s)	141, 2009
EarI	CTCTTC	2 cut(s)	141, 2009
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	2 cut(s)	677, 1239
Eco130I	CCWWGG	5 cut(s)	67, 414, 445, 949, 1513
Eco24I	GRGCYC	3 cut(s)	679, 1149, 1241
Eco32I	GATATC	4 cut(s)	271, 318, 331, 439
Eco47I	GGWCC	4 cut(s)	195, 1049, 1106, 1535
Eco53kI	GAGCTC	2 cut(s)	677, 1239
Eco57I	CTGAAG	1 cut(s)	411
EcoICRI	GAGCTC	2 cut(s)	677, 1239
EcoO109I	RGGNCCY	3 cut(s)	195, 1049, 1106
EcoRI	GAATTC	1 cut(s)	1960
EcoRV	GATATC	4 cut(s)	271, 318, 331, 439
EcoT14I	CCWWGG	5 cut(s)	67, 414, 445, 949, 1513
EcoT22I	ATGCAT	2 cut(s)	478, 2072
EcoT38I	GRGCYC	3 cut(s)	679, 1149, 1241
ErhI	CCWWGG	5 cut(s)	67, 414, 445, 949, 1513
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	7 cut(s)	911, 1057, 1268, 1345, 1366, 1396, 1405
FalI	AAGNNNNNCTT	6 cut(s)	51, 83, 438, 470, 1926, 1958
FaqI	GGGAC	4 cut(s)	820, 1035, 1194, 1221
FatI	CATG	7 cut(s)	907, 1053, 1264, 1341, 1362, 1392, 1401
FauI	CCCGC	3 cut(s)	142, 1578, 1649
FauNDI	CATATG	2 cut(s)	1060, 2066
FbaI	TGATCA	1 cut(s)	1683
FblI	GTMKAC	1 cut(s)	864
FokI	GGATG	7 cut(s)	156, 171, 485, 1170, 1321, 1679, 2144
FriOI	GRGCYC	3 cut(s)	679, 1149, 1241
FspBI	CTAG	3 cut(s)	1041, 1227, 1470
GsaI	CCCAGC	2 cut(s)	639, 663
GsuI	CTGGAG	3 cut(s)	183, 759, 2035
HaeIII	GGCC	3 cut(s)	1165, 1996, 2019
HapII	CCGG	3 cut(s)	1231, 1747, 1993
Hin1II	CATG	7 cut(s)	911, 1057, 1268, 1345, 1366, 1396, 1405
HindIII	AAGCTT	1 cut(s)	650
HpaII	CCGG	3 cut(s)	1231, 1747, 1993
HphI	GGTGA	6 cut(s)	747, 1076, 1317, 1736, 2042, 2111
Hpy166II	GTNNAC	6 cut(s)	755, 865, 1202, 1253, 1510, 1707
Hpy188III	TCNNGA	7 cut(s)	707, 1022, 1295, 1342, 2052, 2129, 2141
Hpy8I	GTNNAC	6 cut(s)	755, 865, 1202, 1253, 1510, 1707
HpyAV	CCTTC	7 cut(s)	198, 435, 506, 948, 1348, 1822, 1842
HpyCH4III	ACNGT	3 cut(s)	157, 1667, 1892
HpyCH4IV	ACGT	2 cut(s)	643, 1921
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 347, 356, 602, 611, 1236, 1910, 1993
HpyF3I	CTNAG	6 cut(s)	89, 701, 854, 1023, 1110, 1247
HpySE526I	ACGT	2 cut(s)	643, 1921
Hsp92II	CATG	7 cut(s)	911, 1057, 1268, 1345, 1366, 1396, 1405
KpnI	GGTACC	1 cut(s)	783
KroI	GCCGGC	2 cut(s)	1230, 1992
KroNI	GCCGGC	2 cut(s)	1232, 1994
Ksp22I	TGATCA	1 cut(s)	1683
KspI	CCGCGG	1 cut(s)	1657
Kzo9I	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	7 cut(s)	146, 181, 624, 674, 992, 1004, 1282
Lsp1109I	GCAGC	8 cut(s)	580, 706, 1019, 1553, 1707, 1714, 1924, 2089
LweI	GCATC	4 cut(s)	193, 463, 485, 681
MaeI	CTAG	3 cut(s)	1041, 1227, 1470
MaeII	ACGT	2 cut(s)	643, 1921
MaeIII	GTNAC	2 cut(s)	1945, 2030
MalI	GATC	7 cut(s)	15, 247, 337, 536, 1273, 1569, 1685
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
MboII	GAAGA	9 cut(s)	17, 128, 396, 693, 890, 1146, 1430, 1673, 1996
MflI	RGATCY	3 cut(s)	245, 534, 1271
MhlI	GDGCHC	5 cut(s)	616, 679, 790, 1149, 1241
MlsI	TGGCCA	1 cut(s)	1165
MluNI	TGGCCA	1 cut(s)	1165
MlyI	GAGTC	5 cut(s)	865, 979, 1076, 1588, 1942
MmeI	TCCRAC	2 cut(s)	763, 926
Mox20I	TGGCCA	1 cut(s)	1165
Mph1103I	ATGCAT	2 cut(s)	478, 2072
MroNI	GCCGGC	2 cut(s)	1230, 1992
MscI	TGGCCA	1 cut(s)	1165
MseI	TTAA	7 cut(s)	608, 1034, 1370, 1679, 1785, 1863, 1887
MslI	CAYNNNNRTG	3 cut(s)	174, 350, 1820
Msp20I	TGGCCA	1 cut(s)	1165
MspA1I	CMGCKG	1 cut(s)	1656
MspI	CCGG	3 cut(s)	1231, 1747, 1993
Mva1269I	GAATGC	1 cut(s)	1429
MvnI	CGCG	1 cut(s)	1656
MwoI	GCNNNNNNNGC	8 cut(s)	30, 347, 356, 602, 611, 1236, 1910, 1993
NaeI	GCCGGC	2 cut(s)	1232, 1994
NciI	CCSGG	1 cut(s)	1748
NdeI	CATATG	2 cut(s)	1060, 2066
NdeII	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
NgoMIV	GCCGGC	2 cut(s)	1230, 1992
NlaIII	CATG	7 cut(s)	911, 1057, 1268, 1345, 1366, 1396, 1405
NlaIV	GGNNCC	2 cut(s)	781, 1051
NmuCI	GTSAC	2 cut(s)	1945, 2030
NsiI	ATGCAT	2 cut(s)	478, 2072
PagI	TCATGA	1 cut(s)	1341
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	736
PctI	GAATGC	1 cut(s)	1429
PdiI	GCCGGC	2 cut(s)	1232, 1994
PfeI	GAWTC	7 cut(s)	233, 1322, 1345, 1603, 2102, 2125, 2137
PflMI	CCANNNNNTGG	2 cut(s)	1267, 1355
PfoI	TCCNGGA	1 cut(s)	1441
PleI	GAGTC	5 cut(s)	864, 978, 1075, 1587, 1942
PpsI	GAGTC	5 cut(s)	864, 978, 1075, 1587, 1942
Ppu21I	YACGTR	1 cut(s)	1922
PpuMI	RGGWCCY	3 cut(s)	195, 1049, 1106
Psp124BI	GAGCTC	2 cut(s)	679, 1241
Psp5II	RGGWCCY	3 cut(s)	195, 1049, 1106
PspFI	CCCAGC	2 cut(s)	635, 659
PspN4I	GGNNCC	2 cut(s)	781, 1051
PspPI	GGNCC	5 cut(s)	195, 1049, 1106, 1535, 2017
PspPPI	RGGWCCY	3 cut(s)	195, 1049, 1106
PsrI	GAACNNNNNNTAC	2 cut(s)	268, 300
PstI	CTGCAG	2 cut(s)	598, 1543
PsuI	RGATCY	3 cut(s)	245, 534, 1271
RsaI	GTAC	5 cut(s)	781, 1511, 1706, 1753, 1769
RsaNI	GTAC	5 cut(s)	780, 1510, 1705, 1752, 1768
RseI	CAYNNNNRTG	3 cut(s)	174, 350, 1820
SacI	GAGCTC	2 cut(s)	679, 1241
SacII	CCGCGG	1 cut(s)	1657
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	7 cut(s)	608, 1034, 1370, 1679, 1785, 1863, 1887
Sau3AI	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
Sau96I	GGNCC	5 cut(s)	195, 1049, 1106, 1535, 2017
SchI	GAGTC	5 cut(s)	865, 979, 1076, 1588, 1942
SduI	GDGCHC	5 cut(s)	616, 679, 790, 1149, 1241
SfaNI	GCATC	4 cut(s)	193, 463, 485, 681
SfcI	CTRYAG	4 cut(s)	594, 861, 1539, 1731
Sfr303I	CCGCGG	1 cut(s)	1657
SgrBI	CCGCGG	1 cut(s)	1657
SinI	GGWCC	4 cut(s)	195, 1049, 1106, 1535
SmiMI	CAYNNNNRTG	3 cut(s)	174, 350, 1820
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
SpeI	ACTAGT	1 cut(s)	1040
SsiI	CCGC	7 cut(s)	33, 149, 664, 1375, 1585, 1654, 1656
SspMI	CTAG	3 cut(s)	1041, 1227, 1470
SstI	GAGCTC	2 cut(s)	679, 1241
StyI	CCWWGG	5 cut(s)	67, 414, 445, 949, 1513
TaaI	ACNGT	3 cut(s)	157, 1667, 1892
TaiI	ACGT	2 cut(s)	646, 1924
TaqI	TCGA	4 cut(s)	499, 679, 1411, 1779
TatI	WGTACW	2 cut(s)	1704, 1767
TauI	GCSGC	2 cut(s)	666, 1377
TfiI	GAWTC	7 cut(s)	233, 1322, 1345, 1603, 2102, 2125, 2137
Tru1I	TTAA	7 cut(s)	608, 1034, 1370, 1679, 1785, 1863, 1887
Tru9I	TTAA	7 cut(s)	608, 1034, 1370, 1679, 1785, 1863, 1887
TscAI	CASTG	7 cut(s)	31, 352, 486, 1537, 1558, 1897, 1914
TseFI	GTSAC	2 cut(s)	1945, 2030
TseI	GCWGC	8 cut(s)	593, 694, 1007, 1541, 1720, 1727, 1937, 2077
Tsp45I	GTSAC	2 cut(s)	1945, 2030
TspGWI	ACGGA	2 cut(s)	979, 1176
TspRI	CASTG	7 cut(s)	31, 352, 486, 1537, 1558, 1897, 1914
Van91I	CCANNNNNTGG	2 cut(s)	1267, 1355
VpaK11BI	GGWCC	4 cut(s)	195, 1049, 1106, 1535
XapI	RAATTY	6 cut(s)	566, 1072, 1078, 1647, 1960, 2056
XmiI	GTMKAC	1 cut(s)	864
XspI	CTAG	3 cut(s)	1041, 1227, 1470
Zsp2I	ATGCAT	2 cut(s)	478, 2072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.