Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001229

Physical Location & Seq

Genomic Coordinates Reverse (-)

17640964 .. 17648287

Gene Structure 7324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00096390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2565 bp

ATGGAGAAGCATTTAGAAGATATTAAAATGGGTCGTTCTGAAGGGGCTTTTAAGATTCCATCGCTCAATATTCCTAGAAAATTAGAGAATACTGCATGGGGAATCCTTCGTACAACTGAGGCATATCATGCATCAAGTGATACTAGCTTGTTTTCGAGCTCATTACCCGTCCTTCCACATGAAAAGTTGAATTTTGCCGATTCGGAGCATTTGCGTCAGTCTGTTGGTGATAGCTTGCCCAATCTAGTTAAAGTTGACCAGGACATTGAGATTAAAGATCCACTTGAAAATGCTGAATCAAATTCGTTCAGAATTACACTTCCTGATGATGAAGACGAGCTGTTAGCAGGCTTAACAGATGATTTTGATCTAAGTCGGCTGCCTAGTCATCTAGAGGAGATGGAAGAGTATGATCTCTTTGGCAGTGGCGGCGGAATGGAATTGGATTTTGAATCGCAAGATAGCCTTGGTATTGGTTTGTCAAAGCTAAGCATATCTGATGGGGTTAGTCCAAATGGTATTGGTCATTATGCTCTTCCAAATGGAGCAGGAACTGTGGCTGGGGAACATCCTTATGGGGAGCATCCTTCAAGGACCTTGTTCGTTAGAAATATCAATAGTAATGTTGAGGATTCCGAATTGAGATCTCTATTTGAGCAATATGGAGATATCAGAACTTTATATACTGCGTGCAAGCATAGGGGATTTGTGATGATATCTTACTATGATATCCGATCTGCTCGCACTGCAATGCGTGCATTACAGAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCCAAGGATAACCCTTCAGAAAAGGATATCAACCAAGGAACTCTTGTGGTTTTCAATTTGGATGCATCAGTGTCAAATGATGACCTTCGACAGATATTTGGGGCTTATGGAGAAGTCAAGGAGATCCGAGAAACACCACACAAGAGACACCATAAATTCATAGAGTTTTATGACGTTAGAGCTGCAGAGGCAGCTTTAAGAGCACTAAATAGGAGCGACATAGCTGGGAAACGCATAAAGCTTGAACCCAGCCGCCCTGGTGGAGCTCGAAGAAACTTGATGCAGCAATTAAGTCAAGAGCTTGACCAAGATGAAACTCGGAGTTTCCGACATCAAGTGGGTTCACCAATGACCAACTCTCCTCCAGGTACCTGGGCACAAATTGGAAGCCCCATTGAACATAATCAGCTTGGTTTTAGTAAGTCCCCAGGTCTGGGAAGCCTGAGTCCTGTGGACAGCAACAATTTACCTGGGTTAGCTTCAATTCTTCCAACTCATGTTCCTAACTCTCCAAAGATTGCACCTATTGGTAAAGACCAAGGAAGGTTGAACCATACAAGTCAGATATTTAGTAACTCTGTTTCAACACCAGGAGCAGCCTATCAGCATTCTCATTCCTTTCCTGAGCAGAAATTAAGCACTAGTCCAGGTCCCATCTCATATGGTGAGTCAAATTCGAATTCATCAGGTATTGGAACTTTGTCAGGTCCTCAGTTTCTCTGGGGAAGCCCAACTCCTTATTCTGAGCCCAAGTCTTCTGCCTGGCCAACATCATCTGTGGGACATCCGTTTTCATCTGGTGGACAGGGACAGGGTTTTTCATTCACTAGCCGGCAGAGCTCTTTCCTCAGTTCACATAACCATCATGTGGGATCTGCTCCATCTGGTGTTCCTCTGGATATGCATTTTGGCTACTTCCCCGAATCACCTGAAACATCCTTCATGAATCCAATGTTTGGGGGCATGGGTTTAAGCTGCAACAATAGTAATTACATGATGAACATGGGTGGTCGTGCAACTATGAATGCTGGCGTTGGTCTTCCAGGAAACATTACTGAAAACGGCTCTCCTAGTTTTAGAATGATGTCAATGCCAAAGCATAGTCCTGTGTACCTTGGGAATGGTTCTTACACTGGACCTGCAGCAACCATCAGTGAGCTATTTGCTGATCGTGGTAGGAGTCGGCGGGTTGAGAATAGTGGGAATCAAGTAGATAGCAAAAAGCAGTATCAACTTGATTTAGATAAAATACTCCGCGGGGAAGACAGTAGGACTACTTTAATGATCAAAAACATCCCCAATAAGTACACTTCTAAAATGCTGCTGGCTGCTATAGATGAAAATCACCGGGGTACATACGATTTCCTGTACTTGCCAATTGACTTTAAGAATAAGTGCAATGTGGGTTATGCCTTCATCAATATGGTGTCTCCTTCCCACATTATAGCCTTTTATGAGGCATTTAATGGCAAGAAGTGGGAGAAGTTTAACAGTGAAAAGGTTGCTTCACTGGCTTATGCACGTATCCAGGGTAAAGCTGCCCTTGTGACTCATTTTCAGAATTCAAGCCTTATGAATGAGGACAAGCGTTGCCGGCCTATCCTCTTCCACTCGGAGGGCCAAGAGACTGGTGACGAGGAAACTTTCCTCTCCCGAAATTTGAACATATGCATACGGCAGCCAGATGGCTCTTATTTGGGTGATTCATTGGACAGCCCAAAGGGGAATCTGGATGAGAATCCAGAGAACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

854

Amino Acids

94.16

Weight (kDa)

5.96

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	200 - 264	1.4e-10	RNA recognition motif
RRM_5	PF13893	282 - 375	2.7e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	285 - 350	3e-11	RNA recognition motif
RRM_2	PF04059	694 - 790	6.2e-55	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29400 AT1G29400 AT1G29400
fragaria_vesca	FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250
malus_domestica	MD05G1291700.v1.1 MD09G1151600.v1.1 MD10G1267700.v1.1 MD17G1139300.v1.1
prunus_persica	Prupe.3G172900_v2.0.a1 Prupe.4G073800_v2.0.a1
pyrus_communis	pycom05g26820 pycom09g07120 pycom10g22380 pycom17g13240
rosa_chinensis	RchiOBHm_Chr2g0151511 RchiOBHm_Chr5g0012911
rosa_laevigata	RLG00000020556 RLG00000031968
rosa_multiflora	Rmu_sc0000940.1_g000021 Rmu_sc0016318.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063670 Rroxscaffold_2G00096390
rosa_rugosa	Rorug02G0426600 Rorug02G0426700 Rorug02G0426800 Rorug05G0005100 Rorug05G0005100 Rorug05G0005100
rosa_samantha	Rh2AG487500 Rh2BG499900 Rh2CG474000 Rh2DG511100 Rh5AG099400 Rh5BG096000 Rh5CG108300 Rh5DG094700
rosa_wichuraiana	Rw2G039960 Rw5G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1957
Acc65I	GGTACC	1 cut(s)	1178
AccB1I	GGYRCC	1 cut(s)	1178
AccB7I	CCANNNNNTGG	2 cut(s)	1678, 1766
AccII	CGCG	1 cut(s)	2067
AciI	CCGC	6 cut(s)	429, 432, 1063, 1996, 2065, 2067
AclWI	GGATC	3 cut(s)	272, 928, 1690
AcoI	YGGCCR	1 cut(s)	1574
AcsI	RAATTY	7 cut(s)	190, 301, 965, 1483, 1489, 2371, 2467
AcuI	CTGAAG	2 cut(s)	60, 810
AfaI	GTAC	6 cut(s)	112, 1180, 1922, 2117, 2164, 2180
AfiI	CCNNNNNNNGG	5 cut(s)	1243, 1244, 1678, 1766, 2425
AhlI	ACTAGT	1 cut(s)	1451
AjuI	GAANNNNNNNTTGG	2 cut(s)	1534, 1566
Alw21I	GWGCWC	4 cut(s)	161, 1015, 1078, 1652
Alw26I	GTCTC	4 cut(s)	772, 949, 2244, 2429
AlwI	GGATC	3 cut(s)	272, 928, 1690
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	3 cut(s)	1574, 2405, 2428
ApoI	RAATTY	7 cut(s)	190, 301, 965, 1483, 1489, 2371, 2467
Asp718I	GGTACC	1 cut(s)	1178
AspS9I	GGNCC	5 cut(s)	594, 1460, 1517, 1946, 2428
AsuC2I	CCSGG	1 cut(s)	2159
AsuHPI	GGTGA	7 cut(s)	239, 1146, 1487, 1728, 2147, 2453, 2522
AsuII	TTCGAA	1 cut(s)	1487
AvaII	GGWCC	4 cut(s)	594, 1460, 1517, 1946
BaeGI	GKGCMC	1 cut(s)	1189
BalI	TGGCCA	1 cut(s)	1576
BanI	GGYRCC	1 cut(s)	1178
BanII	GRGCYC	4 cut(s)	161, 1078, 1560, 1652
BbsI	GAAGAC	4 cut(s)	339, 1557, 1841, 2079
Bbv12I	GWGCWC	4 cut(s)	161, 1015, 1078, 1652
BccI	CCATC	8 cut(s)	67, 394, 494, 1472, 1680, 1699, 1967, 2489
BceAI	ACGGC	2 cut(s)	1888, 2501
BciVI	GTATCC	1 cut(s)	2345
BclI	TGATCA	1 cut(s)	2094
BcnI	CCSGG	1 cut(s)	2159
BcoDI	GTCTC	4 cut(s)	772, 949, 2244, 2429
BcuI	ACTAGT	1 cut(s)	1451
BfaI	CTAG	8 cut(s)	75, 144, 245, 384, 392, 1452, 1638, 1881
BfmI	CTRYAG	3 cut(s)	993, 1950, 2142
BfuAI	ACCTGC	1 cut(s)	1957
BfuI	GTATCC	1 cut(s)	2345
BglII	AGATCT	1 cut(s)	644
BlpI	GCTNAGC	1 cut(s)	488
Bme18I	GGWCC	4 cut(s)	594, 1460, 1517, 1946
BmgT120I	GGNCC	5 cut(s)	594, 1460, 1517, 1946, 2428
BmiI	GGNNCC	2 cut(s)	1180, 1462
BmsI	GCATC	5 cut(s)	140, 592, 862, 884, 1080
BpiI	GAAGAC	4 cut(s)	339, 1557, 1841, 2079
BpmI	CTGGAG	1 cut(s)	1158
Bpu10I	CCTNAGC	1 cut(s)	1434
Bpu1102I	GCTNAGC	1 cut(s)	488
Bpu14I	TTCGAA	1 cut(s)	1487
BpuEI	CTTGAG	1 cut(s)	796
BpuMI	CCSGG	1 cut(s)	2159
BsaAI	YACGTR	1 cut(s)	2333
BsaBI	GATNNNNATC	3 cut(s)	366, 2151, 2547
BsaXI	ACNNNNNCTCC	2 cut(s)	1153, 1183
Bsc4I	CCNNNNNNNGG	5 cut(s)	1243, 1244, 1678, 1766, 2425
Bse118I	RCCGGY	2 cut(s)	1641, 2403
Bse1I	ACTGG	3 cut(s)	1948, 2325, 2443
Bse3DI	GCAATG	2 cut(s)	756, 2215
Bse8I	GATNNNNATC	3 cut(s)	366, 2151, 2547
BseGI	GGATG	7 cut(s)	568, 583, 877, 1594, 1745, 2103, 2548
BseJI	GATNNNNATC	3 cut(s)	366, 2151, 2547
BseLI	CCNNNNNNNGG	5 cut(s)	1243, 1244, 1678, 1766, 2425
BseMI	GCAATG	2 cut(s)	756, 2215
BseMII	CTCAG	6 cut(s)	108, 1244, 1425, 1535, 1545, 1672
BseNI	ACTGG	3 cut(s)	1948, 2325, 2443
BseRI	GAGGAG	2 cut(s)	410, 1161
BseSI	GKGCMC	1 cut(s)	1189
BseYI	CCCAGC	3 cut(s)	560, 1034, 1058
Bsh1236I	CGCG	1 cut(s)	2067
BshFI	GGCC	3 cut(s)	1576, 2407, 2430
BshNI	GGYRCC	1 cut(s)	1178
BsiHKAI	GWGCWC	4 cut(s)	161, 1015, 1078, 1652
BsiSI	CCGG	3 cut(s)	1642, 2158, 2404
BslFI	GGGAC	4 cut(s)	1219, 1446, 1605, 1632
BslI	CCNNNNNNNGG	5 cut(s)	1243, 1244, 1678, 1766, 2425
BsmAI	GTCTC	4 cut(s)	772, 949, 2244, 2429
BsmBI	CGTCTC	1 cut(s)	772
BsmFI	GGGAC	4 cut(s)	1219, 1446, 1605, 1632
BsmI	GAATGC	2 cut(s)	1417, 1840
BsnI	GGCC	3 cut(s)	1576, 2407, 2430
Bsp119I	TTCGAA	1 cut(s)	1487
Bsp1286I	GDGCHC	6 cut(s)	161, 1015, 1078, 1189, 1560, 1652
Bsp143I	GATC	9 cut(s)	277, 367, 412, 644, 734, 933, 1682, 1978, 2094
Bsp1720I	GCTNAGC	1 cut(s)	488
BspACI	CCGC	6 cut(s)	429, 432, 1063, 1996, 2065, 2067
BspANI	GGCC	3 cut(s)	1576, 2407, 2430
BspCNI	CTCAG	6 cut(s)	109, 1245, 1426, 1534, 1546, 1671
BspFNI	CGCG	1 cut(s)	2067
BspHI	TCATGA	1 cut(s)	1752
BspLI	GGNNCC	2 cut(s)	1180, 1462
BspMAI	CTGCAG	2 cut(s)	997, 1954
BspMI	ACCTGC	1 cut(s)	1957
BspPI	GGATC	3 cut(s)	272, 928, 1690
BspQI	GCTCTTC	1 cut(s)	540
BspT104I	TTCGAA	1 cut(s)	1487
BspT107I	GGYRCC	1 cut(s)	1178
BsrDI	GCAATG	2 cut(s)	756, 2215
BsrFI	RCCGGY	2 cut(s)	1641, 2403
BsrI	ACTGG	3 cut(s)	1948, 2325, 2443
BssAI	RCCGGY	2 cut(s)	1641, 2403
BssMI	GATC	9 cut(s)	277, 367, 412, 644, 734, 933, 1682, 1978, 2094
BssT1I	CCWWGG	5 cut(s)	466, 813, 844, 1348, 1924
Bst4CI	ACNGT	3 cut(s)	556, 2078, 2303
Bst6I	CTCTTC	3 cut(s)	399, 540, 2420
BstAPI	GCANNNNNTGC	2 cut(s)	128, 755
BstBAI	YACGTR	1 cut(s)	2333
BstBI	TTCGAA	1 cut(s)	1487
BstDEI	CTNAG	8 cut(s)	117, 371, 488, 1253, 1434, 1521, 1554, 1658
BstDSI	CCRYGG	1 cut(s)	2065
BstF5I	GGATG	7 cut(s)	568, 583, 877, 1594, 1745, 2103, 2548
BstFNI	CGCG	1 cut(s)	2067
BstKTI	GATC	9 cut(s)	280, 370, 415, 647, 737, 936, 1685, 1981, 2097
BstMAI	GTCTC	4 cut(s)	772, 949, 2244, 2429
BstMBI	GATC	9 cut(s)	277, 367, 412, 644, 734, 933, 1682, 1978, 2094
BstSFI	CTRYAG	3 cut(s)	993, 1950, 2142
BstSLI	GKGCMC	1 cut(s)	1189
BstUI	CGCG	1 cut(s)	2067
BstV2I	GAAGAC	4 cut(s)	339, 1557, 1841, 2079
BstX2I	RGATCY	4 cut(s)	277, 644, 933, 1682
BstXI	CCANNNNNNTGG	2 cut(s)	1182, 2438
BstYI	RGATCY	4 cut(s)	277, 644, 933, 1682
BsuI	GTATCC	1 cut(s)	2345
BsuRI	GGCC	3 cut(s)	1576, 2407, 2430
BtgI	CCRYGG	1 cut(s)	2065
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	7 cut(s)	568, 583, 877, 1594, 1745, 2103, 2548
BtsI	GCAGTG	2 cut(s)	430, 744
BtsIMutI	CAGTG	7 cut(s)	430, 744, 885, 1941, 1969, 2308, 2318
BveI	ACCTGC	1 cut(s)	1957
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	1 cut(s)	1752
Cfr10I	RCCGGY	2 cut(s)	1641, 2403
Cfr13I	GGNCC	5 cut(s)	594, 1460, 1517, 1946, 2428
Cfr42I	CCGCGG	1 cut(s)	2068
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	6 cut(s)	111, 1179, 1921, 2116, 2163, 2179
CviAII	CATG	9 cut(s)	96, 128, 179, 1307, 1676, 1753, 1774, 1804, 1813
CviQI	GTAC	6 cut(s)	111, 1179, 1921, 2116, 2163, 2179
DdeI	CTNAG	8 cut(s)	117, 371, 488, 1253, 1434, 1521, 1554, 1658
DpnI	GATC	9 cut(s)	279, 369, 414, 646, 736, 935, 1684, 1980, 2096
DpnII	GATC	9 cut(s)	277, 367, 412, 644, 734, 933, 1682, 1978, 2094
EaeI	YGGCCR	1 cut(s)	1574
Eam1104I	CTCTTC	3 cut(s)	399, 540, 2420
EarI	CTCTTC	3 cut(s)	399, 540, 2420
EciI	GGCGGA	1 cut(s)	447
Ecl136II	GAGCTC	3 cut(s)	159, 1076, 1650
Eco130I	CCWWGG	5 cut(s)	466, 813, 844, 1348, 1924
Eco24I	GRGCYC	4 cut(s)	161, 1078, 1560, 1652
Eco32I	GATATC	4 cut(s)	670, 717, 730, 838
Eco47I	GGWCC	4 cut(s)	594, 1460, 1517, 1946
Eco53kI	GAGCTC	3 cut(s)	159, 1076, 1650
Eco57I	CTGAAG	2 cut(s)	60, 810
EcoICRI	GAGCTC	3 cut(s)	159, 1076, 1650
EcoO109I	RGGNCCY	3 cut(s)	594, 1460, 1517
EcoRI	GAATTC	2 cut(s)	1489, 2371
EcoRV	GATATC	4 cut(s)	670, 717, 730, 838
EcoT14I	CCWWGG	5 cut(s)	466, 813, 844, 1348, 1924
EcoT22I	ATGCAT	4 cut(s)	133, 877, 1716, 2483
EcoT38I	GRGCYC	4 cut(s)	161, 1078, 1560, 1652
ErhI	CCWWGG	5 cut(s)	466, 813, 844, 1348, 1924
Esp3I	CGTCTC	1 cut(s)	772
FaeI	CATG	9 cut(s)	99, 131, 182, 1310, 1679, 1756, 1777, 1807, 1816
FalI	AAGNNNNNCTT	8 cut(s)	267, 299, 450, 482, 837, 869, 2337, 2369
FaqI	GGGAC	4 cut(s)	1219, 1446, 1605, 1632
FatI	CATG	9 cut(s)	95, 127, 178, 1306, 1675, 1752, 1773, 1803, 1812
FauI	CCCGC	2 cut(s)	1989, 2060
FauNDI	CATATG	2 cut(s)	1471, 2477
FbaI	TGATCA	1 cut(s)	2094
FokI	GGATG	7 cut(s)	555, 570, 884, 1581, 1732, 2090, 2555
FriOI	GRGCYC	4 cut(s)	161, 1078, 1560, 1652
FspBI	CTAG	8 cut(s)	75, 144, 245, 384, 392, 1452, 1638, 1881
GsaI	CCCAGC	3 cut(s)	564, 1038, 1062
GsuI	CTGGAG	1 cut(s)	1158
HaeIII	GGCC	3 cut(s)	1576, 2407, 2430
HapII	CCGG	3 cut(s)	1642, 2158, 2404
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	9 cut(s)	99, 131, 182, 1310, 1679, 1756, 1777, 1807, 1816
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	1049
HpaII	CCGG	3 cut(s)	1642, 2158, 2404
HphI	GGTGA	7 cut(s)	239, 1146, 1487, 1728, 2147, 2453, 2522
Hpy166II	GTNNAC	7 cut(s)	256, 1154, 1264, 1613, 1664, 1921, 2118
Hpy188III	TCNNGA	9 cut(s)	323, 392, 1106, 1433, 1706, 1753, 2463, 2540, 2552
Hpy8I	GTNNAC	7 cut(s)	256, 1154, 1264, 1613, 1664, 1921, 2118
HpyCH4III	ACNGT	3 cut(s)	556, 2078, 2303
HpyCH4IV	ACGT	2 cut(s)	984, 2332
HpyF3I	CTNAG	8 cut(s)	117, 371, 488, 1253, 1434, 1521, 1554, 1658
HpySE526I	ACGT	2 cut(s)	984, 2332
Hsp92II	CATG	9 cut(s)	99, 131, 182, 1310, 1679, 1756, 1777, 1807, 1816
KpnI	GGTACC	1 cut(s)	1182
KroI	GCCGGC	2 cut(s)	1641, 2403
KroNI	GCCGGC	2 cut(s)	1643, 2405
Ksp22I	TGATCA	1 cut(s)	2094
KspI	CCGCGG	1 cut(s)	2068
Kzo9I	GATC	9 cut(s)	277, 367, 412, 644, 734, 933, 1682, 1978, 2094
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	7 cut(s)	205, 545, 580, 1023, 1073, 1403, 1693
LweI	GCATC	5 cut(s)	140, 592, 862, 884, 1080
MaeI	CTAG	8 cut(s)	75, 144, 245, 384, 392, 1452, 1638, 1881
MaeII	ACGT	2 cut(s)	984, 2332
MaeIII	GTNAC	3 cut(s)	1382, 2356, 2441
MalI	GATC	9 cut(s)	279, 369, 414, 646, 736, 935, 1684, 1980, 2096
MboI	GATC	9 cut(s)	277, 367, 412, 644, 734, 933, 1682, 1978, 2094
MfeI	CAATTG	1 cut(s)	2187
MflI	RGATCY	4 cut(s)	277, 644, 933, 1682
MhlI	GDGCHC	6 cut(s)	161, 1015, 1078, 1189, 1560, 1652
MlsI	TGGCCA	1 cut(s)	1576
MluNI	TGGCCA	1 cut(s)	1576
MlyI	GAGTC	4 cut(s)	1264, 1487, 1999, 2353
MmeI	TCCRAC	2 cut(s)	1162, 1325
Mox20I	TGGCCA	1 cut(s)	1576
Mph1103I	ATGCAT	4 cut(s)	133, 877, 1716, 2483
MroNI	GCCGGC	2 cut(s)	1641, 2403
MscI	TGGCCA	1 cut(s)	1576
MslI	CAYNNNNRTG	3 cut(s)	573, 749, 2231
Msp20I	TGGCCA	1 cut(s)	1576
MspA1I	CMGCKG	1 cut(s)	2067
MspI	CCGG	3 cut(s)	1642, 2158, 2404
MunI	CAATTG	1 cut(s)	2187
Mva1269I	GAATGC	2 cut(s)	1417, 1840
MvnI	CGCG	1 cut(s)	2067
NaeI	GCCGGC	2 cut(s)	1643, 2405
NciI	CCSGG	1 cut(s)	2159
NdeI	CATATG	2 cut(s)	1471, 2477
NdeII	GATC	9 cut(s)	277, 367, 412, 644, 734, 933, 1682, 1978, 2094
NgoMIV	GCCGGC	2 cut(s)	1641, 2403
NlaIII	CATG	9 cut(s)	99, 131, 182, 1310, 1679, 1756, 1777, 1807, 1816
NlaIV	GGNNCC	2 cut(s)	1180, 1462
NmuCI	GTSAC	2 cut(s)	2356, 2441
NsiI	ATGCAT	4 cut(s)	133, 877, 1716, 2483
NspV	TTCGAA	1 cut(s)	1487
PagI	TCATGA	1 cut(s)	1752
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	1135
PctI	GAATGC	2 cut(s)	1417, 1840
PdiI	GCCGGC	2 cut(s)	1643, 2405
PflMI	CCANNNNNTGG	2 cut(s)	1678, 1766
PfoI	TCCNGGA	1 cut(s)	1852
PleI	GAGTC	4 cut(s)	1263, 1486, 1998, 2353
PpsI	GAGTC	4 cut(s)	1263, 1486, 1998, 2353
Ppu21I	YACGTR	1 cut(s)	2333
PpuMI	RGGWCCY	3 cut(s)	594, 1460, 1517
Psp124BI	GAGCTC	3 cut(s)	161, 1078, 1652
Psp5II	RGGWCCY	3 cut(s)	594, 1460, 1517
PspFI	CCCAGC	3 cut(s)	560, 1034, 1058
PspN4I	GGNNCC	2 cut(s)	1180, 1462
PspPI	GGNCC	5 cut(s)	594, 1460, 1517, 1946, 2428
PspPPI	RGGWCCY	3 cut(s)	594, 1460, 1517
PsrI	GAACNNNNNNTAC	2 cut(s)	667, 699
PstI	CTGCAG	2 cut(s)	997, 1954
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	4 cut(s)	277, 644, 933, 1682
RsaI	GTAC	6 cut(s)	112, 1180, 1922, 2117, 2164, 2180
RsaNI	GTAC	6 cut(s)	111, 1179, 1921, 2116, 2163, 2179
RseI	CAYNNNNRTG	3 cut(s)	573, 749, 2231
SacI	GAGCTC	3 cut(s)	161, 1078, 1652
SacII	CCGCGG	1 cut(s)	2068
SapI	GCTCTTC	1 cut(s)	540
Sau3AI	GATC	9 cut(s)	277, 367, 412, 644, 734, 933, 1682, 1978, 2094
Sau96I	GGNCC	5 cut(s)	594, 1460, 1517, 1946, 2428
SchI	GAGTC	4 cut(s)	1264, 1487, 1999, 2353
SduI	GDGCHC	6 cut(s)	161, 1015, 1078, 1189, 1560, 1652
SfaNI	GCATC	5 cut(s)	140, 592, 862, 884, 1080
SfcI	CTRYAG	3 cut(s)	993, 1950, 2142
Sfr303I	CCGCGG	1 cut(s)	2068
SfuI	TTCGAA	1 cut(s)	1487
SgrBI	CCGCGG	1 cut(s)	2068
SinI	GGWCC	4 cut(s)	594, 1460, 1517, 1946
SmiMI	CAYNNNNRTG	3 cut(s)	573, 749, 2231
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
SpeI	ACTAGT	1 cut(s)	1451
SsiI	CCGC	6 cut(s)	429, 432, 1063, 1996, 2065, 2067
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	8 cut(s)	75, 144, 245, 384, 392, 1452, 1638, 1881
SstI	GAGCTC	3 cut(s)	161, 1078, 1652
StyI	CCWWGG	5 cut(s)	466, 813, 844, 1348, 1924
TaaI	ACNGT	3 cut(s)	556, 2078, 2303
TaiI	ACGT	2 cut(s)	987, 2335
TaqI	TCGA	4 cut(s)	155, 898, 1078, 1487
TatI	WGTACW	2 cut(s)	2115, 2178
TauI	GCSGC	2 cut(s)	432, 1065
TscAI	CASTG	7 cut(s)	430, 751, 885, 1948, 1969, 2308, 2325
TseFI	GTSAC	2 cut(s)	2356, 2441
Tsp45I	GTSAC	2 cut(s)	2356, 2441
TspGWI	ACGGA	1 cut(s)	1587
TspRI	CASTG	7 cut(s)	430, 751, 885, 1948, 1969, 2308, 2325
Van91I	CCANNNNNTGG	2 cut(s)	1678, 1766
VpaK11BI	GGWCC	4 cut(s)	594, 1460, 1517, 1946
XapI	RAATTY	7 cut(s)	190, 301, 965, 1483, 1489, 2371, 2467
XbaI	TCTAGA	1 cut(s)	391
XspI	CTAG	8 cut(s)	75, 144, 245, 384, 392, 1452, 1638, 1881
Zsp2I	ATGCAT	4 cut(s)	133, 877, 1716, 2483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.