Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001229

Physical Location & Seq

Genomic Coordinates Forward (+)

63914461 .. 63922004

Gene Structure 7544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG474000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

ATGGAAGAGTATGATCTCTTTGGCAGTGGCGGCGGAATGGAATTGGATTTTGAATTGCAAGATAGCCTTGGTATTGGTTTGTCAAAGCTAAGCATATCTGATGGGGTTAGTCCAAATGGTATTGGTCATTATGCTCTTCCAAATGGAGCGGGAACTGTGGCTGGAGAACATCCTTATGGGGAGCATCCTTCAAGGACCTTGTTCGTTAGAAATATCAATAGTAATGTTGAGGATTCCGAATTGAGATCTCTATTTGAGCAATATGGAGATATCAGAACTTTGTATACTGCGTGCAAGCATAGGGGATTTGTGATGATATCATACTATGATATCCGATCTGCTCGCACTGCAATGCGTGCATTACAGAACAAGCCCTTGAGACGTAGAAAACTTGACATTCATTTTTCAATTCCCAAGGATAACCCTTCAGAAAAGGATATCAACCAAGGAACTCTTGTGGTTTTCAATTTGGATGCATCAGTGTCAAATGATGACCTTCGACAGATATTTGGGGCTTATGGAGAAGTCAAGGAGATCCGAGAAACACCACACAAGAGACACCATAAATTCATAGAGTTTTATGACGTTAGAGCTGCAGAGGTAGCTTTAAGAGCACTAAATAGGAGCGACATAGCTGGGAAACGTATAAAGCTTGAACCCAGCCGCCCTGGTGGAGCTCGAAGAAACTTGATGCAGCAACTAAGTCAAGAGCTTGACCAAGATGAAACTCGGAGTTTCCGACATCAAGTGGGTTCACCAATGACCAACTCTCCTCCAGGTACCTGGGCACAAATTGGAAGCCCCATTGAACATAATCAGCTTGGTTTTAGTAAGTCCCCAGGTCTGGGAAGCCTGAGTCCTGTAGACAGCAACAATTTACCTGGGTTAGCTTCAATTCTTCCAACTCATGTTCCTAACTCCCCAAAGATTGCACCTATTGGTAAAGACCAAGGAAGGTTGAACAATACGAGTCAGATATTTAGTAGCTCCGTTTCAACGCCAGGAGCAGCCTATTCCTTTCCTGAGCAGAAATTAAGCACTAGTCCAGGTCCCATCTCATATGGTGAGTCAAATTCAAATTCATCAGGTATTGGAACTTTGTCAGGTCCTCAGTTTCTCTGGGGAAGCCCAACTCCTTATTCCGAGCCCAAGTCTTCTGCCTGGCCAACATCATCTGTGGGACATCCGTTTTCATCTGGTGGACAGGGACAGGGTTTTCCATTCACTAGCCGGCAGAGCTCTTTCCTCAGTTCACATAACCATCATGTGGGATCTGCTCCATCTGGTGTTCCTCTGGATAGGCATTTTGGCTACTTCCCCGAATCACCTGAAACATCCTTCATGAATCCAATGTTTGGGGGCATGGGTTTAAGCCGCAACAATAGTAATTACATGATGAACATGGGTGGTCGTGCAACTATGAATGCTGGTGTTGGTCTTCCAGGAAACATTAGTGAAAATGGCTCTCCTAGTTTTAGAATGATGTCAATGCCAAAGCATAGTCCTGTGTACCTTGGGAATGGTTCTTACACTGGACCTGCAGCAACCATCAGTGAGCTATTTGCTGATCGTGGTAGGAGTCGGCGGGTTGAGAATAGTGGGAATCAAGTAGATAGCAAAAAGCAGTATCAACTTGATTTAGATAAAATTCTCCGCGGGGAAGACAGTAGGACTACTTTAATGATCAAAAACATCCCCAATAAGTACACTTCTAAAATGCTGCTGGCTGCTATAGATGAAAATCACCGGGGTACATACGATTTCCTGTACTTGCCAATCGACTTTAAGAATAAGTGCAATGTGGGTTATGCCTTCATCAATATGGTGTCTCCTTCCCACATTATAGCCTTTTATGAGGTTGATTCCAGAATTTCAATCGTTTCGTTTACTGCTGGTCTATCTGTATTTTGTGTGGTTTATTTTCCAGGAAGAAAGGAAGAACTTAATACTGATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

652

Amino Acids

71.45

Weight (kDa)

8.2

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	67 - 131	1e-10	RNA recognition motif
RRM_5	PF13893	149 - 242	1.8e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	152 - 217	1.5e-10	RNA recognition motif
RRM_2	PF04059	557 - 620	2.2e-34	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29400 AT1G29400 AT1G29400
fragaria_vesca	FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250
malus_domestica	MD05G1291700.v1.1 MD09G1151600.v1.1 MD10G1267700.v1.1 MD17G1139300.v1.1
prunus_persica	Prupe.3G172900_v2.0.a1 Prupe.4G073800_v2.0.a1
pyrus_communis	pycom05g26820 pycom09g07120 pycom10g22380 pycom17g13240
rosa_chinensis	RchiOBHm_Chr2g0151511 RchiOBHm_Chr5g0012911
rosa_laevigata	RLG00000020556 RLG00000031968
rosa_multiflora	Rmu_sc0000940.1_g000021 Rmu_sc0016318.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063670 Rroxscaffold_2G00096390
rosa_rugosa	Rorug02G0426600 Rorug02G0426700 Rorug02G0426800 Rorug05G0005100 Rorug05G0005100 Rorug05G0005100
rosa_samantha	Rh2AG487500 Rh2BG499900 Rh2CG474000 Rh2DG511100 Rh5AG099400 Rh5BG096000 Rh5CG108300 Rh5DG094700
rosa_wichuraiana	Rw2G039960 Rw5G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1546
Acc65I	GGTACC	1 cut(s)	779
AccB1I	GGYRCC	1 cut(s)	779
AccB7I	CCANNNNNTGG	2 cut(s)	1267, 1355
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	2 cut(s)	284, 864
AccII	CGCG	1 cut(s)	1656
AciI	CCGC	8 cut(s)	30, 33, 149, 664, 1375, 1585, 1654, 1656
AclWI	GGATC	2 cut(s)	529, 1279
AcoI	YGGCCR	1 cut(s)	1163
AcsI	RAATTY	5 cut(s)	566, 1072, 1078, 1647, 1869
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	5 cut(s)	781, 1511, 1706, 1753, 1769
AfiI	CCNNNNNNNGG	4 cut(s)	844, 845, 1267, 1355
AhlI	ACTAGT	1 cut(s)	1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	1123, 1155
Alw21I	GWGCWC	3 cut(s)	616, 679, 1241
Alw26I	GTCTC	3 cut(s)	373, 550, 1833
AlwI	GGATC	2 cut(s)	529, 1279
AoxI	GGCC	1 cut(s)	1163
ApeKI	GCWGC	6 cut(s)	593, 694, 1007, 1541, 1720, 1727
ApoI	RAATTY	5 cut(s)	566, 1072, 1078, 1647, 1869
Asp718I	GGTACC	1 cut(s)	779
AspS9I	GGNCC	4 cut(s)	195, 1049, 1106, 1535
AsuC2I	CCSGG	1 cut(s)	1748
AsuHPI	GGTGA	4 cut(s)	747, 1076, 1317, 1736
AvaII	GGWCC	4 cut(s)	195, 1049, 1106, 1535
BaeGI	GKGCMC	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	1165
BanI	GGYRCC	1 cut(s)	779
BanII	GRGCYC	3 cut(s)	679, 1149, 1241
BbsI	GAAGAC	3 cut(s)	1146, 1430, 1668
Bbv12I	GWGCWC	3 cut(s)	616, 679, 1241
BbvI	GCAGC	6 cut(s)	580, 706, 1019, 1553, 1707, 1714
BccI	CCATC	5 cut(s)	95, 1061, 1269, 1288, 1556
BclI	TGATCA	1 cut(s)	1683
BcnI	CCSGG	1 cut(s)	1748
BcoDI	GTCTC	3 cut(s)	373, 550, 1833
BcuI	ACTAGT	1 cut(s)	1040
BfaI	CTAG	3 cut(s)	1041, 1227, 1470
BfmI	CTRYAG	4 cut(s)	594, 861, 1539, 1731
BfuAI	ACCTGC	1 cut(s)	1546
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	9 cut(s)	31, 594, 664, 695, 1008, 1375, 1542, 1721, 1728
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	9 cut(s)	32, 595, 665, 696, 1009, 1376, 1543, 1722, 1729
Bme18I	GGWCC	4 cut(s)	195, 1049, 1106, 1535
BmgT120I	GGNCC	4 cut(s)	195, 1049, 1106, 1535
BmiI	GGNNCC	2 cut(s)	781, 1051
BmsI	GCATC	4 cut(s)	193, 463, 485, 681
BpiI	GAAGAC	3 cut(s)	1146, 1430, 1668
BpmI	CTGGAG	2 cut(s)	183, 759
Bpu10I	CCTNAGC	1 cut(s)	1023
Bpu1102I	GCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	1748
BsaBI	GATNNNNATC	1 cut(s)	1740
BsaXI	ACNNNNNCTCC	2 cut(s)	754, 784
Bsc4I	CCNNNNNNNGG	4 cut(s)	844, 845, 1267, 1355
Bse118I	RCCGGY	1 cut(s)	1230
Bse1I	ACTGG	1 cut(s)	1537
Bse3DI	GCAATG	2 cut(s)	357, 1804
Bse8I	GATNNNNATC	1 cut(s)	1740
BseGI	GGATG	6 cut(s)	169, 184, 478, 1183, 1334, 1692
BseJI	GATNNNNATC	1 cut(s)	1740
BseLI	CCNNNNNNNGG	4 cut(s)	844, 845, 1267, 1355
BseMI	GCAATG	2 cut(s)	357, 1804
BseMII	CTCAG	4 cut(s)	845, 1014, 1124, 1261
BseNI	ACTGG	1 cut(s)	1537
BseRI	GAGGAG	1 cut(s)	762
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	6 cut(s)	580, 706, 1019, 1553, 1707, 1714
BseYI	CCCAGC	2 cut(s)	635, 659
Bsh1236I	CGCG	1 cut(s)	1656
BshFI	GGCC	1 cut(s)	1165
BshNI	GGYRCC	1 cut(s)	779
BsiHKAI	GWGCWC	3 cut(s)	616, 679, 1241
BsiSI	CCGG	2 cut(s)	1231, 1747
BslFI	GGGAC	4 cut(s)	820, 1035, 1194, 1221
BslI	CCNNNNNNNGG	4 cut(s)	844, 845, 1267, 1355
BsmAI	GTCTC	3 cut(s)	373, 550, 1833
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	4 cut(s)	820, 1035, 1194, 1221
BsmI	GAATGC	1 cut(s)	1429
BsnI	GGCC	1 cut(s)	1165
Bsp1286I	GDGCHC	5 cut(s)	616, 679, 790, 1149, 1241
Bsp143I	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	8 cut(s)	30, 33, 149, 664, 1375, 1585, 1654, 1656
BspANI	GGCC	1 cut(s)	1165
BspCNI	CTCAG	4 cut(s)	846, 1015, 1123, 1260
BspFNI	CGCG	1 cut(s)	1656
BspHI	TCATGA	1 cut(s)	1341
BspLI	GGNNCC	2 cut(s)	781, 1051
BspMAI	CTGCAG	2 cut(s)	598, 1543
BspMI	ACCTGC	1 cut(s)	1546
BspPI	GGATC	2 cut(s)	529, 1279
BspQI	GCTCTTC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	779
BsrBI	CCGCTC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	357, 1804
BsrFI	RCCGGY	1 cut(s)	1230
BsrI	ACTGG	1 cut(s)	1537
BssAI	RCCGGY	1 cut(s)	1230
BssMI	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
BssNAI	GTATAC	1 cut(s)	285
BssT1I	CCWWGG	5 cut(s)	67, 414, 445, 949, 1513
Bst1107I	GTATAC	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	157, 1667
Bst6I	CTCTTC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	6 cut(s)	292, 296, 343, 357, 1232, 1725
BstDEI	CTNAG	6 cut(s)	89, 701, 854, 1023, 1110, 1247
BstDSI	CCRYGG	1 cut(s)	1654
BstF5I	GGATG	6 cut(s)	169, 184, 478, 1183, 1334, 1692
BstFNI	CGCG	1 cut(s)	1656
BstKTI	GATC	7 cut(s)	16, 248, 338, 537, 1274, 1570, 1686
BstMAI	GTCTC	3 cut(s)	373, 550, 1833
BstMBI	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 347, 356, 602, 611, 1236
BstSFI	CTRYAG	4 cut(s)	594, 861, 1539, 1731
BstSLI	GKGCMC	1 cut(s)	790
BstUI	CGCG	1 cut(s)	1656
BstV1I	GCAGC	6 cut(s)	580, 706, 1019, 1553, 1707, 1714
BstV2I	GAAGAC	3 cut(s)	1146, 1430, 1668
BstX2I	RGATCY	3 cut(s)	245, 534, 1271
BstXI	CCANNNNNNTGG	1 cut(s)	783
BstYI	RGATCY	3 cut(s)	245, 534, 1271
BstZ17I	GTATAC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	1165
BtgI	CCRYGG	1 cut(s)	1654
BtsCI	GGATG	6 cut(s)	169, 184, 478, 1183, 1334, 1692
BtsI	GCAGTG	2 cut(s)	31, 345
BtsIMutI	CAGTG	5 cut(s)	31, 345, 486, 1530, 1558
BveI	ACCTGC	1 cut(s)	1546
Cac8I	GCNNGC	6 cut(s)	292, 296, 343, 357, 1232, 1725
CciI	TCATGA	1 cut(s)	1341
Cfr10I	RCCGGY	1 cut(s)	1230
Cfr13I	GGNCC	4 cut(s)	195, 1049, 1106, 1535
Cfr42I	CCGCGG	1 cut(s)	1657
Csp6I	GTAC	5 cut(s)	780, 1510, 1705, 1752, 1768
CviAII	CATG	6 cut(s)	908, 1265, 1342, 1363, 1393, 1402
CviQI	GTAC	5 cut(s)	780, 1510, 1705, 1752, 1768
DdeI	CTNAG	6 cut(s)	89, 701, 854, 1023, 1110, 1247
DpnI	GATC	7 cut(s)	15, 247, 337, 536, 1273, 1569, 1685
DpnII	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
EaeI	YGGCCR	1 cut(s)	1163
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	2 cut(s)	677, 1239
Eco130I	CCWWGG	5 cut(s)	67, 414, 445, 949, 1513
Eco24I	GRGCYC	3 cut(s)	679, 1149, 1241
Eco32I	GATATC	4 cut(s)	271, 318, 331, 439
Eco47I	GGWCC	4 cut(s)	195, 1049, 1106, 1535
Eco53kI	GAGCTC	2 cut(s)	677, 1239
Eco57I	CTGAAG	1 cut(s)	411
EcoICRI	GAGCTC	2 cut(s)	677, 1239
EcoO109I	RGGNCCY	3 cut(s)	195, 1049, 1106
EcoRV	GATATC	4 cut(s)	271, 318, 331, 439
EcoT14I	CCWWGG	5 cut(s)	67, 414, 445, 949, 1513
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	3 cut(s)	679, 1149, 1241
ErhI	CCWWGG	5 cut(s)	67, 414, 445, 949, 1513
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	6 cut(s)	911, 1268, 1345, 1366, 1396, 1405
FalI	AAGNNNNNCTT	4 cut(s)	51, 83, 438, 470
FaqI	GGGAC	4 cut(s)	820, 1035, 1194, 1221
FatI	CATG	6 cut(s)	907, 1264, 1341, 1362, 1392, 1401
FauI	CCCGC	3 cut(s)	142, 1578, 1649
FauNDI	CATATG	1 cut(s)	1060
FbaI	TGATCA	1 cut(s)	1683
FblI	GTMKAC	2 cut(s)	284, 864
Fnu4HI	GCNGC	9 cut(s)	31, 594, 664, 695, 1008, 1375, 1542, 1721, 1728
FokI	GGATG	6 cut(s)	156, 171, 485, 1170, 1321, 1679
FriOI	GRGCYC	3 cut(s)	679, 1149, 1241
Fsp4HI	GCNGC	9 cut(s)	31, 594, 664, 695, 1008, 1375, 1542, 1721, 1728
FspBI	CTAG	3 cut(s)	1041, 1227, 1470
GluI	GCNGC	9 cut(s)	31, 594, 664, 695, 1008, 1375, 1542, 1721, 1728
GsaI	CCCAGC	2 cut(s)	639, 663
GsuI	CTGGAG	2 cut(s)	183, 759
HaeIII	GGCC	1 cut(s)	1165
HapII	CCGG	2 cut(s)	1231, 1747
Hin1II	CATG	6 cut(s)	911, 1268, 1345, 1366, 1396, 1405
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	9 cut(s)	233, 856, 970, 1067, 1322, 1345, 1579, 1603, 1862
HpaII	CCGG	2 cut(s)	1231, 1747
HphI	GGTGA	4 cut(s)	747, 1076, 1317, 1736
Hpy166II	GTNNAC	8 cut(s)	285, 755, 865, 1202, 1253, 1510, 1707, 1887
Hpy188III	TCNNGA	5 cut(s)	707, 1022, 1295, 1342, 1866
Hpy8I	GTNNAC	8 cut(s)	285, 755, 865, 1202, 1253, 1510, 1707, 1887
HpyAV	CCTTC	7 cut(s)	198, 435, 506, 948, 1348, 1822, 1842
HpyCH4III	ACNGT	2 cut(s)	157, 1667
HpyCH4IV	ACGT	3 cut(s)	382, 585, 643
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 347, 356, 602, 611, 1236
HpyF3I	CTNAG	6 cut(s)	89, 701, 854, 1023, 1110, 1247
HpySE526I	ACGT	3 cut(s)	382, 585, 643
Hsp92II	CATG	6 cut(s)	911, 1268, 1345, 1366, 1396, 1405
KpnI	GGTACC	1 cut(s)	783
KroI	GCCGGC	1 cut(s)	1230
KroNI	GCCGGC	1 cut(s)	1232
Ksp22I	TGATCA	1 cut(s)	1683
KspI	CCGCGG	1 cut(s)	1657
Kzo9I	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	7 cut(s)	146, 181, 624, 674, 992, 1004, 1282
Lsp1109I	GCAGC	6 cut(s)	580, 706, 1019, 1553, 1707, 1714
LweI	GCATC	4 cut(s)	193, 463, 485, 681
MaeI	CTAG	3 cut(s)	1041, 1227, 1470
MaeII	ACGT	3 cut(s)	382, 585, 643
MalI	GATC	7 cut(s)	15, 247, 337, 536, 1273, 1569, 1685
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
MboII	GAAGA	9 cut(s)	17, 128, 693, 890, 1146, 1430, 1673, 1941, 1949
MflI	RGATCY	3 cut(s)	245, 534, 1271
MhlI	GDGCHC	5 cut(s)	616, 679, 790, 1149, 1241
MlsI	TGGCCA	1 cut(s)	1165
MluNI	TGGCCA	1 cut(s)	1165
MlyI	GAGTC	4 cut(s)	865, 979, 1076, 1588
MmeI	TCCRAC	2 cut(s)	763, 926
MnlI	CCTC	7 cut(s)	223, 592, 783, 1119, 1256, 1302, 1849
Mox20I	TGGCCA	1 cut(s)	1165
Mph1103I	ATGCAT	1 cut(s)	478
MroNI	GCCGGC	1 cut(s)	1230
MscI	TGGCCA	1 cut(s)	1165
MseI	TTAA	7 cut(s)	608, 1034, 1370, 1679, 1785, 1944, 1957
MslI	CAYNNNNRTG	3 cut(s)	174, 350, 1820
Msp20I	TGGCCA	1 cut(s)	1165
MspA1I	CMGCKG	1 cut(s)	1656
MspI	CCGG	2 cut(s)	1231, 1747
Mva1269I	GAATGC	1 cut(s)	1429
MvnI	CGCG	1 cut(s)	1656
MwoI	GCNNNNNNNGC	6 cut(s)	30, 347, 356, 602, 611, 1236
NaeI	GCCGGC	1 cut(s)	1232
NciI	CCSGG	1 cut(s)	1748
NdeI	CATATG	1 cut(s)	1060
NdeII	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
NgoMIV	GCCGGC	1 cut(s)	1230
NlaIII	CATG	6 cut(s)	911, 1268, 1345, 1366, 1396, 1405
NlaIV	GGNNCC	2 cut(s)	781, 1051
NsiI	ATGCAT	1 cut(s)	478
PagI	TCATGA	1 cut(s)	1341
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	736
PctI	GAATGC	1 cut(s)	1429
PdiI	GCCGGC	1 cut(s)	1232
PfeI	GAWTC	5 cut(s)	233, 1322, 1345, 1603, 1862
PflMI	CCANNNNNTGG	2 cut(s)	1267, 1355
PfoI	TCCNGGA	2 cut(s)	1441, 1924
PkrI	GCNGC	9 cut(s)	32, 595, 665, 696, 1009, 1376, 1543, 1722, 1729
PleI	GAGTC	4 cut(s)	864, 978, 1075, 1587
PpsI	GAGTC	4 cut(s)	864, 978, 1075, 1587
PpuMI	RGGWCCY	3 cut(s)	195, 1049, 1106
Psp124BI	GAGCTC	2 cut(s)	679, 1241
Psp5II	RGGWCCY	3 cut(s)	195, 1049, 1106
PspFI	CCCAGC	2 cut(s)	635, 659
PspN4I	GGNNCC	2 cut(s)	781, 1051
PspPI	GGNCC	4 cut(s)	195, 1049, 1106, 1535
PspPPI	RGGWCCY	3 cut(s)	195, 1049, 1106
PsrI	GAACNNNNNNTAC	2 cut(s)	268, 300
PstI	CTGCAG	2 cut(s)	598, 1543
PsuI	RGATCY	3 cut(s)	245, 534, 1271
RsaI	GTAC	5 cut(s)	781, 1511, 1706, 1753, 1769
RsaNI	GTAC	5 cut(s)	780, 1510, 1705, 1752, 1768
RseI	CAYNNNNRTG	3 cut(s)	174, 350, 1820
SacI	GAGCTC	2 cut(s)	679, 1241
SacII	CCGCGG	1 cut(s)	1657
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	7 cut(s)	608, 1034, 1370, 1679, 1785, 1944, 1957
SatI	GCNGC	9 cut(s)	31, 594, 664, 695, 1008, 1375, 1542, 1721, 1728
Sau3AI	GATC	7 cut(s)	13, 245, 335, 534, 1271, 1567, 1683
Sau96I	GGNCC	4 cut(s)	195, 1049, 1106, 1535
SchI	GAGTC	4 cut(s)	865, 979, 1076, 1588
SduI	GDGCHC	5 cut(s)	616, 679, 790, 1149, 1241
SfaNI	GCATC	4 cut(s)	193, 463, 485, 681
SfcI	CTRYAG	4 cut(s)	594, 861, 1539, 1731
Sfr303I	CCGCGG	1 cut(s)	1657
SgrBI	CCGCGG	1 cut(s)	1657
SinI	GGWCC	4 cut(s)	195, 1049, 1106, 1535
SmiMI	CAYNNNNRTG	3 cut(s)	174, 350, 1820
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
SpeI	ACTAGT	1 cut(s)	1040
SsiI	CCGC	8 cut(s)	30, 33, 149, 664, 1375, 1585, 1654, 1656
SspMI	CTAG	3 cut(s)	1041, 1227, 1470
SstI	GAGCTC	2 cut(s)	679, 1241
StyI	CCWWGG	5 cut(s)	67, 414, 445, 949, 1513
TaaI	ACNGT	2 cut(s)	157, 1667
TaiI	ACGT	3 cut(s)	385, 588, 646
TaqI	TCGA	3 cut(s)	499, 679, 1779
TatI	WGTACW	2 cut(s)	1704, 1767
TauI	GCSGC	3 cut(s)	33, 666, 1377
TfiI	GAWTC	5 cut(s)	233, 1322, 1345, 1603, 1862
Tru1I	TTAA	7 cut(s)	608, 1034, 1370, 1679, 1785, 1944, 1957
Tru9I	TTAA	7 cut(s)	608, 1034, 1370, 1679, 1785, 1944, 1957
TscAI	CASTG	5 cut(s)	31, 352, 486, 1537, 1558
TseI	GCWGC	6 cut(s)	593, 694, 1007, 1541, 1720, 1727
TspGWI	ACGGA	2 cut(s)	979, 1176
TspRI	CASTG	5 cut(s)	31, 352, 486, 1537, 1558
Van91I	CCANNNNNTGG	2 cut(s)	1267, 1355
VpaK11BI	GGWCC	4 cut(s)	195, 1049, 1106, 1535
XapI	RAATTY	5 cut(s)	566, 1072, 1078, 1647, 1869
XmiI	GTMKAC	2 cut(s)	284, 864
XspI	CTAG	3 cut(s)	1041, 1227, 1470
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.