Mei2-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 743 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 253 |
| AccII | CGCG | 1 cut(s) | 1573 |
| AciI | CCGC | 5 cut(s) | 935, 1355, 1571, 1686, 1990 |
| AclI | AACGTT | 2 cut(s) | 1499, 2401 |
| AcoI | YGGCCR | 1 cut(s) | 1568 |
| AcsI | RAATTY | 4 cut(s) | 90, 953, 1801, 2374 |
| AcuI | CTGAAG | 1 cut(s) | 1545 |
| AcyI | GRCGYC | 1 cut(s) | 1277 |
| AfaI | GTAC | 3 cut(s) | 671, 1206, 2167 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 53, 253, 1342, 1631, 1796, 1946, 2347 |
| AflII | CTTAAG | 1 cut(s) | 995 |
| AflIII | ACRYGT | 1 cut(s) | 1863 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1242 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2451, 2483 |
| Alw21I | GWGCWC | 1 cut(s) | 1066 |
| Alw26I | GTCTC | 2 cut(s) | 937, 2247 |
| Ama87I | CYCGRG | 1 cut(s) | 1730 |
| AoxI | GGCC | 8 cut(s) | 31, 244, 1507, 1568, 1786, 1899, 1936, 2361 |
| ApaI | GGGCCC | 1 cut(s) | 1790 |
| ApeKI | GCWGC | 6 cut(s) | 725, 980, 989, 1829, 2141, 2351 |
| ApoI | RAATTY | 4 cut(s) | 90, 953, 1801, 2374 |
| AseI | ATTAAT | 3 cut(s) | 828, 1812, 2093 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2466 |
| AspLEI | GCGC | 1 cut(s) | 744 |
| AspS9I | GGNCC | 8 cut(s) | 32, 1236, 1466, 1508, 1786, 1787, 1937, 2362 |
| AsuHPI | GGTGA | 5 cut(s) | 326, 1658, 1728, 1896, 2456 |
| AvaI | CYCGRG | 1 cut(s) | 1730 |
| AvaII | GGWCC | 2 cut(s) | 1236, 1466 |
| BaeGI | GKGCMC | 2 cut(s) | 1177, 1790 |
| BamHI | GGATCC | 2 cut(s) | 859, 1682 |
| BanII | GRGCYC | 2 cut(s) | 1066, 1790 |
| BbsI | GAAGAC | 3 cut(s) | 390, 885, 2400 |
| Bbv12I | GWGCWC | 1 cut(s) | 1066 |
| BbvI | GCAGC | 6 cut(s) | 712, 967, 1001, 1816, 2128, 2363 |
| BccI | CCATC | 9 cut(s) | 120, 482, 820, 871, 1671, 1677, 1699, 1891, 1964 |
| BciVI | GTATCC | 2 cut(s) | 68, 2348 |
| BclI | TGATCA | 1 cut(s) | 2446 |
| BcoDI | GTCTC | 2 cut(s) | 937, 2247 |
| BfaI | CTAG | 4 cut(s) | 579, 1833, 2082, 2537 |
| BfmI | CTRYAG | 1 cut(s) | 981 |
| BfrI | CTTAAG | 1 cut(s) | 995 |
| BfuI | GTATCC | 2 cut(s) | 68, 2348 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2324 |
| BisI | GCNGC | 7 cut(s) | 726, 981, 990, 1571, 1830, 2142, 2352 |
| BlpI | GCTNAGC | 1 cut(s) | 1913 |
| BlsI | GCNGC | 7 cut(s) | 727, 982, 991, 1572, 1831, 2143, 2353 |
| Bme18I | GGWCC | 2 cut(s) | 1236, 1466 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1242 |
| BmeT110I | CYCGRG | 1 cut(s) | 1730 |
| BmgT120I | GGNCC | 8 cut(s) | 32, 1236, 1466, 1508, 1786, 1787, 1937, 2362 |
| BmiI | GGNNCC | 9 cut(s) | 376, 838, 861, 1238, 1468, 1684, 1788, 1789, 2018 |
| BmrI | ACTGGG | 2 cut(s) | 507, 1041 |
| BmsI | GCATC | 3 cut(s) | 118, 580, 1297 |
| BmuI | ACTGGG | 2 cut(s) | 507, 1041 |
| BoxI | GACNNNNGTC | 1 cut(s) | 885 |
| BpiI | GAAGAC | 3 cut(s) | 390, 885, 2400 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1519, 1551, 2501, 2533, 2531, 2563 |
| BpmI | CTGGAG | 1 cut(s) | 570 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1652 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1913 |
| BpuEI | CTTGAG | 3 cut(s) | 106, 1462, 1867 |
| BsaBI | GATNNNNATC | 2 cut(s) | 828, 2154 |
| BsaHI | GRCGYC | 1 cut(s) | 1277 |
| BsaJI | CCNNGG | 9 cut(s) | 378, 840, 1054, 1336, 1386, 1387, 1444, 2322, 2341 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1141, 1171 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 53, 253, 1342, 1631, 1796, 1946, 2347 |
| Bse1I | ACTGG | 4 cut(s) | 232, 502, 1047, 1261 |
| Bse3DI | GCAATG | 2 cut(s) | 268, 2218 |
| Bse8I | GATNNNNATC | 2 cut(s) | 828, 2154 |
| BseDI | CCNNGG | 9 cut(s) | 378, 840, 1054, 1336, 1386, 1387, 1444, 2322, 2341 |
| BseGI | GGATG | 6 cut(s) | 556, 571, 1129, 1288, 1382, 2256 |
| BseJI | GATNNNNATC | 2 cut(s) | 828, 2154 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 53, 253, 1342, 1631, 1796, 1946, 2347 |
| BseMI | GCAATG | 2 cut(s) | 268, 2218 |
| BseMII | CTCAG | 6 cut(s) | 373, 1232, 1557, 1644, 2427, 2439 |
| BseNI | ACTGG | 4 cut(s) | 232, 502, 1047, 1261 |
| BseRI | GAGGAG | 3 cut(s) | 93, 335, 338 |
| BseSI | GKGCMC | 2 cut(s) | 1177, 1790 |
| BseXI | GCAGC | 6 cut(s) | 712, 967, 1001, 1816, 2128, 2363 |
| BseYI | CCCAGC | 1 cut(s) | 1170 |
| Bsh1236I | CGCG | 1 cut(s) | 1573 |
| BshFI | GGCC | 8 cut(s) | 33, 246, 1509, 1570, 1788, 1901, 1938, 2363 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1066 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1730 |
| BslFI | GGGAC | 3 cut(s) | 1452, 1599, 2087 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 53, 253, 1342, 1631, 1796, 1946, 2347 |
| BsmAI | GTCTC | 2 cut(s) | 937, 2247 |
| BsmFI | GGGAC | 3 cut(s) | 1452, 1599, 2087 |
| BsmI | GAATGC | 1 cut(s) | 2273 |
| BsnI | GGCC | 8 cut(s) | 33, 246, 1509, 1570, 1788, 1901, 1938, 2363 |
| BsoBI | CYCGRG | 1 cut(s) | 1730 |
| Bsp120I | GGGCCC | 1 cut(s) | 1786 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1066, 1177, 1790 |
| Bsp1407I | TGTACA | 2 cut(s) | 669, 1204 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1913 |
| Bsp19I | CCATGG | 1 cut(s) | 1444 |
| BspACI | CCGC | 5 cut(s) | 935, 1355, 1571, 1686, 1990 |
| BspANI | GGCC | 8 cut(s) | 33, 246, 1509, 1570, 1788, 1901, 1938, 2363 |
| BspCNI | CTCAG | 6 cut(s) | 372, 1233, 1556, 1643, 2428, 2438 |
| BspFNI | CGCG | 1 cut(s) | 1573 |
| BspLI | GGNNCC | 9 cut(s) | 376, 838, 861, 1238, 1468, 1684, 1788, 1789, 2018 |
| BspMAI | CTGCAG | 1 cut(s) | 985 |
| BspQI | GCTCTTC | 1 cut(s) | 528 |
| BspTI | CTTAAG | 1 cut(s) | 995 |
| BsrDI | GCAATG | 2 cut(s) | 268, 2218 |
| BsrGI | TGTACA | 2 cut(s) | 669, 1204 |
| BsrI | ACTGG | 4 cut(s) | 232, 502, 1047, 1261 |
| BssECI | CCNNGG | 9 cut(s) | 378, 840, 1054, 1336, 1386, 1387, 1444, 2322, 2341 |
| BssNI | GRCGYC | 1 cut(s) | 1277 |
| BssT1I | CCWWGG | 4 cut(s) | 840, 1336, 1444, 2322 |
| Bst4CI | ACNGT | 5 cut(s) | 1179, 1211, 1578, 1796, 2040 |
| Bst6I | CTCTTC | 2 cut(s) | 387, 528 |
| BstACI | GRCGYC | 1 cut(s) | 1277 |
| BstAFI | CTTAAG | 1 cut(s) | 995 |
| BstAUI | TGTACA | 2 cut(s) | 669, 1204 |
| BstC8I | GCNNGC | 3 cut(s) | 305, 337, 455 |
| BstDEI | CTNAG | 8 cut(s) | 359, 1241, 1543, 1630, 1652, 1913, 2425, 2436 |
| BstDSI | CCRYGG | 1 cut(s) | 1444 |
| BstF5I | GGATG | 6 cut(s) | 556, 571, 1129, 1288, 1382, 2256 |
| BstFNI | CGCG | 1 cut(s) | 1573 |
| BstHHI | GCGC | 1 cut(s) | 744 |
| BstMAI | GTCTC | 2 cut(s) | 937, 2247 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 341, 518, 734, 986, 989, 1829, 2217, 2324, 2360 |
| BstNSI | RCATGY | 2 cut(s) | 681, 1867 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 885 |
| BstSFI | CTRYAG | 1 cut(s) | 981 |
| BstSLI | GKGCMC | 2 cut(s) | 1177, 1790 |
| BstUI | CGCG | 1 cut(s) | 1573 |
| BstV1I | GCAGC | 6 cut(s) | 712, 967, 1001, 1816, 2128, 2363 |
| BstV2I | GAAGAC | 3 cut(s) | 390, 885, 2400 |
| BstX2I | RGATCY | 5 cut(s) | 101, 859, 1391, 1484, 1682 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 70, 1170, 1268, 1445 |
| BstYI | RGATCY | 5 cut(s) | 101, 859, 1391, 1484, 1682 |
| BsuI | GTATCC | 2 cut(s) | 68, 2348 |
| BsuRI | GGCC | 8 cut(s) | 33, 246, 1509, 1570, 1788, 1901, 1938, 2363 |
| BtgI | CCRYGG | 1 cut(s) | 1444 |
| BtsCI | GGATG | 6 cut(s) | 556, 571, 1129, 1288, 1382, 2256 |
| BtsI | GCAGTG | 2 cut(s) | 672, 1761 |
| BtsIMutI | CAGTG | 5 cut(s) | 367, 672, 1587, 1761, 2074 |
| Cac8I | GCNNGC | 3 cut(s) | 305, 337, 455 |
| CfoI | GCGC | 1 cut(s) | 744 |
| Cfr13I | GGNCC | 8 cut(s) | 32, 1236, 1466, 1508, 1786, 1787, 1937, 2362 |
| CseI | GACGC | 1 cut(s) | 1266 |
| CsiI | ACCWGGT | 1 cut(s) | 1162 |
| Csp6I | GTAC | 3 cut(s) | 670, 1205, 2166 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 516, 551 |
| CviQI | GTAC | 3 cut(s) | 670, 1205, 2166 |
| DdeI | CTNAG | 8 cut(s) | 359, 1241, 1543, 1630, 1652, 1913, 2425, 2436 |
| DraI | TTTAAA | 1 cut(s) | 1891 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1242 |
| EaeI | YGGCCR | 1 cut(s) | 1568 |
| Eam1104I | CTCTTC | 2 cut(s) | 387, 528 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1242 |
| EarI | CTCTTC | 2 cut(s) | 387, 528 |
| EciI | GGCGGA | 2 cut(s) | 1675, 2005 |
| Ecl136II | GAGCTC | 1 cut(s) | 1064 |
| Eco130I | CCWWGG | 4 cut(s) | 840, 1336, 1444, 2322 |
| Eco24I | GRGCYC | 2 cut(s) | 1066, 1790 |
| Eco32I | GATATC | 1 cut(s) | 705 |
| Eco47I | GGWCC | 2 cut(s) | 1236, 1466 |
| Eco53kI | GAGCTC | 1 cut(s) | 1064 |
| Eco57I | CTGAAG | 1 cut(s) | 1545 |
| Eco88I | CYCGRG | 1 cut(s) | 1730 |
| EcoICRI | GAGCTC | 1 cut(s) | 1064 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1236, 1787 |
| EcoRV | GATATC | 1 cut(s) | 705 |
| EcoT14I | CCWWGG | 4 cut(s) | 840, 1336, 1444, 2322 |
| EcoT22I | ATGCAT | 1 cut(s) | 2227 |
| EcoT38I | GRGCYC | 2 cut(s) | 1066, 1790 |
| ErhI | CCWWGG | 4 cut(s) | 840, 1336, 1444, 2322 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 164, 196, 978, 1010, 2451, 2483 |
| FaqI | GGGAC | 3 cut(s) | 1452, 1599, 2087 |
| FauNDI | CATATG | 1 cut(s) | 562 |
| FbaI | TGATCA | 1 cut(s) | 2446 |
| Fnu4HI | GCNGC | 7 cut(s) | 726, 981, 990, 1571, 1830, 2142, 2352 |
| FokI | GGATG | 6 cut(s) | 543, 558, 1116, 1275, 1369, 2243 |
| FriOI | GRGCYC | 2 cut(s) | 1066, 1790 |
| Fsp4HI | GCNGC | 7 cut(s) | 726, 981, 990, 1571, 1830, 2142, 2352 |
| FspAI | RTGCGCAY | 1 cut(s) | 743 |
| FspBI | CTAG | 4 cut(s) | 579, 1833, 2082, 2537 |
| FspI | TGCGCA | 1 cut(s) | 743 |
| GlaI | GCGC | 1 cut(s) | 743 |
| GluI | GCNGC | 7 cut(s) | 726, 981, 990, 1571, 1830, 2142, 2352 |
| GsaI | CCCAGC | 1 cut(s) | 1174 |
| GsuI | CTGGAG | 1 cut(s) | 570 |
| HaeIII | GGCC | 8 cut(s) | 33, 246, 1509, 1570, 1788, 1901, 1938, 2363 |
| HgaI | GACGC | 1 cut(s) | 1266 |
| HhaI | GCGC | 1 cut(s) | 744 |
| Hin1I | GRCGYC | 1 cut(s) | 1277 |
| Hin6I | GCGC | 1 cut(s) | 742 |
| HinP1I | GCGC | 1 cut(s) | 742 |
| HindIII | AAGCTT | 4 cut(s) | 301, 1037, 1885, 1910 |
| HphI | GGTGA | 5 cut(s) | 326, 1658, 1728, 1896, 2456 |
| Hpy166II | GTNNAC | 4 cut(s) | 672, 683, 1028, 1207 |
| Hpy188III | TCNNGA | 7 cut(s) | 99, 353, 579, 1094, 1234, 1421, 2529 |
| Hpy8I | GTNNAC | 4 cut(s) | 672, 683, 1028, 1207 |
| Hpy99I | CGWCG | 2 cut(s) | 771, 1071 |
| HpyAV | CCTTC | 8 cut(s) | 585, 1306, 1335, 1603, 1668, 2256, 2341, 2481 |
| HpyCH4III | ACNGT | 5 cut(s) | 1179, 1211, 1578, 1796, 2040 |
| HpyCH4IV | ACGT | 2 cut(s) | 1499, 2401 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 341, 518, 734, 986, 989, 1829, 2217, 2324, 2360 |
| HpyF3I | CTNAG | 8 cut(s) | 359, 1241, 1543, 1630, 1652, 1913, 2425, 2436 |
| HpySE526I | ACGT | 2 cut(s) | 1499, 2401 |
| Hsp92I | GRCGYC | 1 cut(s) | 1277 |
| HspAI | GCGC | 1 cut(s) | 742 |
| Ksp22I | TGATCA | 1 cut(s) | 2446 |
| LguI | GCTCTTC | 1 cut(s) | 528 |
| LmnI | GCTCC | 6 cut(s) | 325, 539, 1011, 1061, 1992, 2016 |
| Lsp1109I | GCAGC | 6 cut(s) | 712, 967, 1001, 1816, 2128, 2363 |
| LweI | GCATC | 3 cut(s) | 118, 580, 1297 |
| MabI | ACCWGGT | 1 cut(s) | 1162 |
| MaeI | CTAG | 4 cut(s) | 579, 1833, 2082, 2537 |
| MaeII | ACGT | 2 cut(s) | 1499, 2401 |
| MaeIII | GTNAC | 4 cut(s) | 150, 314, 1734, 2133 |
| MfeI | CAATTG | 1 cut(s) | 294 |
| MflI | RGATCY | 5 cut(s) | 101, 859, 1391, 1484, 1682 |
| MhlI | GDGCHC | 3 cut(s) | 1066, 1177, 1790 |
| MlyI | GAGTC | 7 cut(s) | 1252, 1357, 1528, 1537, 1742, 2510, 2519 |
| MmeI | TCCRAC | 4 cut(s) | 1271, 1556, 1660, 2493 |
| Mph1103I | ATGCAT | 1 cut(s) | 2227 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2466 |
| MslI | CAYNNNNRTG | 3 cut(s) | 561, 1443, 1674 |
| MspCI | CTTAAG | 1 cut(s) | 995 |
| MunI | CAATTG | 1 cut(s) | 294 |
| Mva1269I | GAATGC | 1 cut(s) | 2273 |
| MvnI | CGCG | 1 cut(s) | 1573 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 341, 518, 734, 986, 989, 1829, 2217, 2324, 2360 |
| NcoI | CCATGG | 1 cut(s) | 1444 |
| NdeI | CATATG | 1 cut(s) | 562 |
| NlaIV | GGNNCC | 9 cut(s) | 376, 838, 861, 1238, 1468, 1684, 1788, 1789, 2018 |
| NmuCI | GTSAC | 2 cut(s) | 314, 1734 |
| NsbI | TGCGCA | 1 cut(s) | 743 |
| NsiI | ATGCAT | 1 cut(s) | 2227 |
| NspI | RCATGY | 2 cut(s) | 681, 1867 |
| PasI | CCCWGGG | 1 cut(s) | 1387 |
| PciI | ACATGT | 1 cut(s) | 1863 |
| PciSI | GCTCTTC | 1 cut(s) | 528 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 727, 1123 |
| PctI | GAATGC | 1 cut(s) | 2273 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2466 |
| PfeI | GAWTC | 7 cut(s) | 4, 43, 620, 1090, 1112, 2413, 2522 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 253 |
| PkrI | GCNGC | 7 cut(s) | 727, 982, 991, 1572, 1831, 2143, 2353 |
| PleI | GAGTC | 7 cut(s) | 1251, 1356, 1528, 1536, 1741, 2510, 2518 |
| PpsI | GAGTC | 7 cut(s) | 1251, 1356, 1528, 1536, 1741, 2510, 2518 |
| PpuMI | RGGWCCY | 1 cut(s) | 1236 |
| PscI | ACATGT | 1 cut(s) | 1863 |
| PshAI | GACNNNNGTC | 1 cut(s) | 885 |
| PshBI | ATTAAT | 3 cut(s) | 828, 1812, 2093 |
| Psp124BI | GAGCTC | 1 cut(s) | 1066 |
| Psp1406I | AACGTT | 2 cut(s) | 1499, 2401 |
| Psp5II | RGGWCCY | 1 cut(s) | 1236 |
| PspFI | CCCAGC | 1 cut(s) | 1170 |
| PspN4I | GGNNCC | 9 cut(s) | 376, 838, 861, 1238, 1468, 1684, 1788, 1789, 2018 |
| PspOMI | GGGCCC | 1 cut(s) | 1786 |
| PspPI | GGNCC | 8 cut(s) | 32, 1236, 1466, 1508, 1786, 1787, 1937, 2362 |
| PspPPI | RGGWCCY | 1 cut(s) | 1236 |
| PstI | CTGCAG | 1 cut(s) | 985 |
| PsuI | RGATCY | 5 cut(s) | 101, 859, 1391, 1484, 1682 |
| RsaI | GTAC | 3 cut(s) | 671, 1206, 2167 |
| RsaNI | GTAC | 3 cut(s) | 670, 1205, 2166 |
| RseI | CAYNNNNRTG | 3 cut(s) | 561, 1443, 1674 |
| SacI | GAGCTC | 1 cut(s) | 1066 |
| SapI | GCTCTTC | 1 cut(s) | 528 |
| SatI | GCNGC | 7 cut(s) | 726, 981, 990, 1571, 1830, 2142, 2352 |
| Sau96I | GGNCC | 8 cut(s) | 32, 1236, 1466, 1508, 1786, 1787, 1937, 2362 |
| SchI | GAGTC | 7 cut(s) | 1252, 1357, 1528, 1537, 1742, 2510, 2519 |
| SduI | GDGCHC | 3 cut(s) | 1066, 1177, 1790 |
| SexAI | ACCWGGT | 1 cut(s) | 1162 |
| SfaNI | GCATC | 3 cut(s) | 118, 580, 1297 |
| SfcI | CTRYAG | 1 cut(s) | 981 |
| SinI | GGWCC | 2 cut(s) | 1236, 1466 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 561, 1443, 1674 |
| SmlI | CTYRAG | 4 cut(s) | 121, 995, 1477, 1882 |
| SmoI | CTYRAG | 4 cut(s) | 121, 995, 1477, 1882 |
| SsiI | CCGC | 5 cut(s) | 935, 1355, 1571, 1686, 1990 |
| SspI | AATATT | 2 cut(s) | 894, 2107 |
| SspMI | CTAG | 4 cut(s) | 579, 1833, 2082, 2537 |
| SstI | GAGCTC | 1 cut(s) | 1066 |
| StyI | CCWWGG | 4 cut(s) | 840, 1336, 1444, 2322 |
| TaaI | ACNGT | 5 cut(s) | 1179, 1211, 1578, 1796, 2040 |
| TaiI | ACGT | 2 cut(s) | 1502, 2404 |
| TaqI | TCGA | 4 cut(s) | 730, 1069, 1126, 2172 |
| TaqII | GACCGA | 1 cut(s) | 2486 |
| TatI | WGTACW | 2 cut(s) | 669, 1204 |
| TauI | GCSGC | 1 cut(s) | 1573 |
| TfiI | GAWTC | 7 cut(s) | 4, 43, 620, 1090, 1112, 2413, 2522 |
| TscAI | CASTG | 5 cut(s) | 367, 679, 1587, 1768, 2074 |
| TseFI | GTSAC | 2 cut(s) | 314, 1734 |
| TseI | GCWGC | 6 cut(s) | 725, 980, 989, 1829, 2141, 2351 |
| Tsp45I | GTSAC | 2 cut(s) | 314, 1734 |
| TspGWI | ACGGA | 3 cut(s) | 784, 875, 1692 |
| TspRI | CASTG | 5 cut(s) | 367, 679, 1587, 1768, 2074 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 253 |
| Vha464I | CTTAAG | 1 cut(s) | 995 |
| VpaK11BI | GGWCC | 2 cut(s) | 1236, 1466 |
| VspI | ATTAAT | 3 cut(s) | 828, 1812, 2093 |
| XapI | RAATTY | 4 cut(s) | 90, 953, 1801, 2374 |
| XbaI | TCTAGA | 1 cut(s) | 578 |
| XceI | RCATGY | 2 cut(s) | 681, 1867 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1167, 1518, 1676 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2466 |
| XspI | CTAG | 4 cut(s) | 579, 1833, 2082, 2537 |
| Zsp2I | ATGCAT | 1 cut(s) | 2227 |