Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001229

Physical Location & Seq

Genomic Coordinates Reverse (-)

42317348 .. 42323682

Gene Structure 6335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1291700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGCTGAACGTGAATGGTACTGAACATGACTTTCAATCTATTGATGATCTTTCGTCTGGCTTAGATAAACTCCACCAAACTTTGGAGGGTAATGATCTGCTTGAAGAAATTGAAACTCATGCAATCGGAAGCTTGCTTCCTGGCGATGAGGAGGAGCTATTAGCTGGCATAGCGGATGATCTTGACCTCAGTGGGTTGCCTGGTTCACTGGAAGACTTGGAAGATTATGATCTATTTGGTAGTGGAGGCGGCATGGAATTGGAAACTGATGCACAGGAGAGCCTGAGAATAGGCATGTCAAAAGTAAGTTTAGCTGACAGTTCTACTGGGAATGGGATGGCTCAATTTGCCCTTCCAAATGGTGTGGGAGCTGTTGCTGGAGAGCATCCATATGGAGAGCATCCTTCCAGAACATTGTTTGTGCGAAATATCAATAGTAATGTTGAGGATTCAGAACTGAGAACACTTTTTGAGCAATACGGTGATATTAGAACGCTGTACACTGCGTGTAAACATAGGGGCTTTGTGATGATATCTTATTATGATATTCGTGCTGCTCGAACTGCTATGCGCACATTACAAAACAAGCCTCTGCGACGTAGGAAACTTGATATTCACTTCTCAATTCCAAAGGATAATCCATCAGAGAAGGATATTAATCAAGGAACTTTGGTAGTTTTCAATTTGGATCCATCAGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACACCACACAAGAGGCATCATAAATTTATTGAGTATTATGATGTTAGAGCTGCAGAAGCAGCCCTTAAGTCGTTAAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCCAGTCGACCTGGTGGAGCTCGTCGAAACTTGATGCTGCAACTGAATCAAGACCCTGAACAAGATGAATCTCAGAGTTTTCGACATCCAGTGGGTTCCCCGATAACCATCTCTCCACCAGGTAACTGGGCTCAGTTTCACAACCCAATGGAACATAGTCCTGTACGGAGTATTAGTAAATCTCCTGGTTTTGGGACAATTAGTCCAACAAACAGCAACCATTTGTCTGGATTAGCATCAATTCTGCATCCCCAGACATCAAACACTGTGAAGGTTGCACCCATTGGCAATAACCATGGAAGGGGGAGTCATGCTGATCATATACTTTCCAATACAAACTCATCCCACGGATCTGCATTTCAACAATCCCACTCATTTCCAGAGAACTCAACCCATTTCCAAGGATCCATGCCCTCGTTCAGTCCTTCAACCTCAAGTGGATCTCATGTGGAAACATTATCAGGCCCGCAATTCCTTTGGGGGAGTCCGACTCCTTACTCAGAAAACACCAACTCTTCAGCTTGGCATCACCAATCAGTGGGACATCAACTTACATCCAATGGGAAGGGGCATGCCTTTCCATTCTCGGGTCATAATGGCTCTTTGCTCAGCTCTTCCCATCATCATCATCATCATCATCATCATCATCATCATGTTGGATCTGCCCCATCTGGTGTTCATTTAGACAGCCGCTTTAATTACTTTCCAGAGTCACCAGAAACATCTTTTTTGGGTCCCGCTGCCTATGGAGGCATGAGTTTGGGCCCCAGTCGTGGAAATTTTATGATTAACATGGGTGCTCGTGCTTCAAGAAATAGTGGCATATCCATACTGGGAAACATGTCTGAAAGTAGTTTGTCAAGCTTTAAAATGGTGGGCTCACCGAAGCTTAGCCCTGTATTTTTAGGGAATGGCCCGTACGCAGGACTGCCACCTACAAGCATAGATGGTTTGATTGAGCGTGGGAGGAGCAGACGAATGGAGAATAATGGGACCCAGATTGATAGCAAGAAGCAGTTTCAGCTTGATTTGGATAAGATTGTCTCCGGGGAAGATACTCGAACAACATTAATGATTAAAAATATTCCAAACAAGTACACCTCGAAAATGTTACTTGCGGCAATAGATGAAAATCACAGGGGTACTTTTGATTTTCTCTATCTGCCAATTGATTTTAAGAACAAATGCAATGTGGGCTATGCATTTATCAATATGCTGTCTCCTTCACACATCATCCCATTTTATGAGGCGTTTAATGGAAAGAAGTGGGAGAAGTTCAATAGTGAGAAAGTTGCCTCCTTGGCTTATGCTCGAATCCAGGGGAAGGTGGCTCTTGTAGCCCACTTTCAAAATTCAAGCCTAATGAATGAAGACAAACGTTGTCGTCCGATTCTCTTTCACTCAGAGGGTTCTGAGGCTGGTGATCAGATCATCCAAGAGCATCTTCCTTCCAACAATTTGGACATCCAGGTTGGTCAGGAAAAGGAGTCGGACTCTGATTCATCAGGAAGCCCAAAGCGTGGCTTTGACGAGAAGCCAGATAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:0097159 GO:1901363 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

808

Amino Acids

88.68

Weight (kDa)

6.2

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	139 - 203	3.9e-10	RNA recognition motif
RRM_5	PF13893	221 - 297	4.1e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	224 - 289	7e-12	RNA recognition motif
RRM_2	PF04059	645 - 741	8.5e-54	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29400 AT1G29400 AT1G29400
fragaria_vesca	FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250
malus_domestica	MD05G1291700.v1.1 MD09G1151600.v1.1 MD10G1267700.v1.1 MD17G1139300.v1.1
prunus_persica	Prupe.3G172900_v2.0.a1 Prupe.4G073800_v2.0.a1
pyrus_communis	pycom05g26820 pycom09g07120 pycom10g22380 pycom17g13240
rosa_chinensis	RchiOBHm_Chr2g0151511 RchiOBHm_Chr5g0012911
rosa_laevigata	RLG00000020556 RLG00000031968
rosa_multiflora	Rmu_sc0000940.1_g000021 Rmu_sc0016318.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063670 Rroxscaffold_2G00096390
rosa_rugosa	Rorug02G0426600 Rorug02G0426700 Rorug02G0426800 Rorug05G0005100 Rorug05G0005100 Rorug05G0005100
rosa_samantha	Rh2AG487500 Rh2BG499900 Rh2CG474000 Rh2DG511100 Rh5AG099400 Rh5BG096000 Rh5CG108300 Rh5DG094700
rosa_wichuraiana	Rw2G039960 Rw5G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	572
AccB7I	CCANNNNNTGG	3 cut(s)	82, 1411, 2393
AccI	GTMKAC	1 cut(s)	880
AciI	CCGC	6 cut(s)	173, 249, 1340, 1564, 1611, 1991
AclI	AACGTT	1 cut(s)	2251
AclWI	GGATC	7 cut(s)	683, 696, 1231, 1272, 1285, 1321, 1540
AcsI	RAATTY	3 cut(s)	782, 1651, 2224
AcuI	CTGAAG	1 cut(s)	1374
AdeI	CACNNNGTG	1 cut(s)	507
AfaI	GTAC	6 cut(s)	19, 500, 1038, 1793, 1970, 2017
AfiI	CCNNNNNNNGG	9 cut(s)	82, 1064, 1174, 1411, 1460, 1646, 1796, 2197, 2393
AflII	CTTAAG	1 cut(s)	824
AflIII	ACRYGT	1 cut(s)	1713
AhdI	GACNNNNNGTC	1 cut(s)	1074
AjnI	CCWGG	7 cut(s)	139, 199, 883, 991, 1057, 2190, 2340
AjuI	GAANNNNNNNTTGG	2 cut(s)	2301, 2333
Alw21I	GWGCWC	2 cut(s)	895, 1675
Alw26I	GTCTC	2 cut(s)	1921, 2097
AlwI	GGATC	7 cut(s)	683, 696, 1231, 1272, 1285, 1321, 1540
Ama87I	CYCGRG	1 cut(s)	1459
AoxI	GGCC	3 cut(s)	1336, 1636, 1786
ApaI	GGGCCC	1 cut(s)	1640
ApeKI	GCWGC	5 cut(s)	554, 809, 818, 910, 1613
ApoI	RAATTY	3 cut(s)	782, 1651, 2224
AseI	ATTAAT	2 cut(s)	657, 1943
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	6 cut(s)	1337, 1607, 1636, 1637, 1787, 1866
AsuC2I	CCSGG	1 cut(s)	1921
AsuHPI	GGTGA	5 cut(s)	494, 1394, 1578, 1746, 2306
AvaI	CYCGRG	1 cut(s)	1459
AvaII	GGWCC	2 cut(s)	1607, 1866
BaeGI	GKGCMC	1 cut(s)	1640
BamHI	GGATCC	2 cut(s)	688, 1277
BanII	GRGCYC	4 cut(s)	895, 1006, 1640, 1754
BauI	CACGAG	1 cut(s)	1674
BbsI	GAAGAC	3 cut(s)	219, 714, 2250
Bbv12I	GWGCWC	2 cut(s)	895, 1675
BbvI	GCAGC	5 cut(s)	541, 796, 830, 897, 1600
BccI	CCATC	7 cut(s)	331, 649, 700, 989, 1500, 1549, 1814
BciT130I	CCWGG	7 cut(s)	141, 201, 885, 993, 1059, 2192, 2342
BclI	TGATCA	2 cut(s)	1189, 2296
BcnI	CCSGG	1 cut(s)	1921
BcoDI	GTCTC	2 cut(s)	1921, 2097
BfmI	CTRYAG	1 cut(s)	810
BfrI	CTTAAG	1 cut(s)	824
BglI	GCCNNNNNGGC	1 cut(s)	2174
BisI	GCNGC	8 cut(s)	250, 555, 810, 819, 911, 1564, 1614, 1992
BlpI	GCTNAGC	2 cut(s)	1481, 1763
BlsI	GCNGC	8 cut(s)	251, 556, 811, 820, 912, 1565, 1615, 1993
Bme1390I	CCNGG	8 cut(s)	141, 201, 885, 993, 1059, 1921, 2192, 2342
Bme18I	GGWCC	2 cut(s)	1607, 1866
BmeRI	GACNNNNNGTC	1 cut(s)	1074
BmeT110I	CYCGRG	1 cut(s)	1459
BmgT120I	GGNCC	6 cut(s)	1337, 1607, 1636, 1637, 1787, 1866
BmiI	GGNNCC	9 cut(s)	690, 970, 1279, 1608, 1609, 1638, 1639, 1867, 1868
BmrFI	CCNGG	8 cut(s)	141, 201, 885, 993, 1059, 1921, 2192, 2342
BmrI	ACTGGG	5 cut(s)	336, 870, 1009, 1635, 1715
BmsI	GCATC	9 cut(s)	259, 394, 409, 784, 897, 1118, 1129, 1408, 2323
BmuI	ACTGGG	5 cut(s)	336, 870, 1009, 1635, 1715
BoxI	GACNNNNGTC	1 cut(s)	714
BpiI	GAAGAC	3 cut(s)	219, 714, 2250
BplI	GAGNNNNNCTC	4 cut(s)	1348, 1380, 2351, 2383
BpmI	CTGGAG	1 cut(s)	399
Bpu1102I	GCTNAGC	2 cut(s)	1481, 1763
BpuEI	CTTGAG	1 cut(s)	1291
BpuMI	CCSGG	1 cut(s)	1921
BsaBI	GATNNNNATC	5 cut(s)	228, 657, 980, 1108, 2004
BsaJI	CCNNGG	6 cut(s)	1168, 1219, 1273, 1920, 2172, 2191
BsaXI	ACNNNNNCTCC	4 cut(s)	970, 1000, 1033, 1063
Bsc4I	CCNNNNNNNGG	9 cut(s)	82, 1064, 1174, 1411, 1460, 1646, 1796, 2197, 2393
Bse1I	ACTGG	7 cut(s)	213, 331, 876, 962, 1004, 1641, 1710
Bse3DI	GCAATG	1 cut(s)	2068
Bse8I	GATNNNNATC	5 cut(s)	228, 657, 980, 1108, 2004
BseBI	CCWGG	7 cut(s)	141, 201, 885, 993, 1059, 2192, 2342
BseDI	CCNNGG	6 cut(s)	1168, 1219, 1273, 1920, 2172, 2191
BseJI	GATNNNNATC	5 cut(s)	228, 657, 980, 1108, 2004
BseLI	CCNNNNNNNGG	9 cut(s)	82, 1064, 1174, 1411, 1460, 1646, 1796, 2197, 2393
BseMI	GCAATG	1 cut(s)	2068
BseMII	CTCAG	9 cut(s)	202, 275, 449, 959, 1019, 1386, 1495, 2277, 2289
BseNI	ACTGG	7 cut(s)	213, 331, 876, 962, 1004, 1641, 1710
BseRI	GAGGAG	3 cut(s)	164, 167, 1855
BseSI	GKGCMC	1 cut(s)	1640
BseXI	GCAGC	5 cut(s)	541, 796, 830, 897, 1600
BshFI	GGCC	3 cut(s)	1338, 1638, 1788
BsiHKAI	GWGCWC	2 cut(s)	895, 1675
BsiHKCI	CYCGRG	1 cut(s)	1459
BsiSI	CCGG	1 cut(s)	1920
BsiWI	CGTACG	1 cut(s)	1791
BslFI	GGGAC	4 cut(s)	1081, 1428, 1593, 1879
BslI	CCNNNNNNNGG	9 cut(s)	82, 1064, 1174, 1411, 1460, 1646, 1796, 2197, 2393
BsmAI	GTCTC	2 cut(s)	1921, 2097
BsmFI	GGGAC	4 cut(s)	1081, 1428, 1593, 1879
BsnI	GGCC	3 cut(s)	1338, 1638, 1788
BsoBI	CYCGRG	1 cut(s)	1459
Bsp120I	GGGCCC	1 cut(s)	1636
Bsp1286I	GDGCHC	5 cut(s)	895, 1006, 1640, 1675, 1754
Bsp1407I	TGTACA	1 cut(s)	498
Bsp1720I	GCTNAGC	2 cut(s)	1481, 1763
Bsp19I	CCATGG	1 cut(s)	1168
BspACI	CCGC	6 cut(s)	173, 249, 1340, 1564, 1611, 1991
BspANI	GGCC	3 cut(s)	1338, 1638, 1788
BspCNI	CTCAG	9 cut(s)	201, 276, 450, 958, 1018, 1385, 1494, 2278, 2288
BspLI	GGNNCC	9 cut(s)	690, 970, 1279, 1608, 1609, 1638, 1639, 1867, 1868
BspMAI	CTGCAG	1 cut(s)	814
BspPI	GGATC	7 cut(s)	683, 696, 1231, 1272, 1285, 1321, 1540
BspQI	GCTCTTC	1 cut(s)	1492
BspTI	CTTAAG	1 cut(s)	824
BsrDI	GCAATG	1 cut(s)	2068
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	7 cut(s)	213, 331, 876, 962, 1004, 1641, 1710
BssECI	CCNNGG	6 cut(s)	1168, 1219, 1273, 1920, 2172, 2191
BssSI	CACGAG	1 cut(s)	1674
BssT1I	CCWWGG	3 cut(s)	1168, 1273, 2172
Bst2BI	CACGAG	1 cut(s)	1674
Bst2UI	CCWGG	7 cut(s)	141, 201, 885, 993, 1059, 2192, 2342
Bst4CI	ACNGT	3 cut(s)	320, 482, 1141
Bst6I	CTCTTC	2 cut(s)	1393, 1492
BstAFI	CTTAAG	1 cut(s)	824
BstAUI	TGTACA	1 cut(s)	498
BstC8I	GCNNGC	4 cut(s)	134, 166, 1340, 1446
BstDSI	CCRYGG	2 cut(s)	1168, 1219
BstHHI	GCGC	1 cut(s)	573
BstMAI	GTCTC	2 cut(s)	1921, 2097
BstMWI	GCNNNNNNNGC	9 cut(s)	170, 347, 563, 815, 818, 1894, 2067, 2174, 2210
BstNI	CCWGG	7 cut(s)	141, 201, 885, 993, 1059, 2192, 2342
BstNSI	RCATGY	3 cut(s)	298, 1448, 1717
BstPAI	GACNNNNGTC	1 cut(s)	714
BstSCI	CCNGG	8 cut(s)	139, 199, 883, 991, 1057, 1919, 2190, 2340
BstSFI	CTRYAG	1 cut(s)	810
BstSLI	GKGCMC	1 cut(s)	1640
BstV1I	GCAGC	5 cut(s)	541, 796, 830, 897, 1600
BstV2I	GAAGAC	3 cut(s)	219, 714, 2250
BstX2I	RGATCY	5 cut(s)	688, 1223, 1277, 1313, 1532
BstXI	CCANNNNNNTGG	3 cut(s)	999, 1100, 2332
BstYI	RGATCY	5 cut(s)	688, 1223, 1277, 1313, 1532
BsuRI	GGCC	3 cut(s)	1338, 1638, 1788
BtgI	CCRYGG	2 cut(s)	1168, 1219
BtgZI	GCGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	6 cut(s)	196, 206, 501, 969, 1137, 1416
Cac8I	GCNNGC	4 cut(s)	134, 166, 1340, 1446
CfoI	GCGC	1 cut(s)	573
Cfr13I	GGNCC	6 cut(s)	1337, 1607, 1636, 1637, 1787, 1866
CsiI	ACCWGGT	2 cut(s)	883, 991
Csp6I	GTAC	6 cut(s)	18, 499, 1037, 1792, 1969, 2016
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviQI	GTAC	6 cut(s)	18, 499, 1037, 1792, 1969, 2016
DraI	TTTAAA	1 cut(s)	1741
DraIII	CACNNNGTG	1 cut(s)	507
DriI	GACNNNNNGTC	1 cut(s)	1074
Eam1104I	CTCTTC	2 cut(s)	1393, 1492
Eam1105I	GACNNNNNGTC	1 cut(s)	1074
EarI	CTCTTC	2 cut(s)	1393, 1492
Ecl136II	GAGCTC	1 cut(s)	893
Eco130I	CCWWGG	3 cut(s)	1168, 1273, 2172
Eco24I	GRGCYC	4 cut(s)	895, 1006, 1640, 1754
Eco32I	GATATC	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	1607, 1866
Eco53kI	GAGCTC	1 cut(s)	893
Eco57I	CTGAAG	1 cut(s)	1374
Eco88I	CYCGRG	1 cut(s)	1459
EcoICRI	GAGCTC	1 cut(s)	893
EcoO109I	RGGNCCY	3 cut(s)	1607, 1637, 1866
EcoRII	CCWGG	7 cut(s)	139, 199, 883, 991, 1057, 2190, 2340
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	3 cut(s)	1168, 1273, 2172
EcoT22I	ATGCAT	1 cut(s)	2077
EcoT38I	GRGCYC	4 cut(s)	895, 1006, 1640, 1754
ErhI	CCWWGG	3 cut(s)	1168, 1273, 2172
FalI	AAGNNNNNCTT	6 cut(s)	807, 839, 2301, 2333, 2381, 2413
FaqI	GGGAC	4 cut(s)	1081, 1428, 1593, 1879
FauI	CCCGC	2 cut(s)	1347, 1618
FauNDI	CATATG	1 cut(s)	391
FbaI	TGATCA	2 cut(s)	1189, 2296
FblI	GTMKAC	1 cut(s)	880
Fnu4HI	GCNGC	8 cut(s)	250, 555, 810, 819, 911, 1564, 1614, 1992
FriOI	GRGCYC	4 cut(s)	895, 1006, 1640, 1754
Fsp4HI	GCNGC	8 cut(s)	250, 555, 810, 819, 911, 1564, 1614, 1992
FspAI	RTGCGCAY	1 cut(s)	572
FspI	TGCGCA	1 cut(s)	572
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	8 cut(s)	250, 555, 810, 819, 911, 1564, 1614, 1992
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	3 cut(s)	1338, 1638, 1788
HapII	CCGG	1 cut(s)	1920
HhaI	GCGC	1 cut(s)	573
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HincII	GTYRAC	1 cut(s)	881
HindII	GTYRAC	1 cut(s)	881
HindIII	AAGCTT	4 cut(s)	130, 866, 1735, 1760
HpaII	CCGG	1 cut(s)	1920
HphI	GGTGA	5 cut(s)	494, 1394, 1578, 1746, 2306
Hpy166II	GTNNAC	6 cut(s)	206, 501, 512, 857, 881, 1971
Hpy188III	TCNNGA	9 cut(s)	182, 408, 923, 1101, 1253, 1580, 1683, 2351, 2379
Hpy8I	GTNNAC	6 cut(s)	206, 501, 512, 857, 881, 1971
Hpy99I	CGWCG	2 cut(s)	600, 900
HpyCH4III	ACNGT	3 cut(s)	320, 482, 1141
HpyCH4IV	ACGT	3 cut(s)	9, 598, 2251
HpyCH4V	TGCA	9 cut(s)	122, 272, 812, 913, 1120, 1151, 1229, 2061, 2075
HpyF10VI	GCNNNNNNNGC	9 cut(s)	170, 347, 563, 815, 818, 1894, 2067, 2174, 2210
HpySE526I	ACGT	3 cut(s)	9, 598, 2251
HspAI	GCGC	1 cut(s)	571
KflI	GGGWCCC	2 cut(s)	1607, 1866
Ksp22I	TGATCA	2 cut(s)	1189, 2296
LguI	GCTCTTC	1 cut(s)	1492
LmnI	GCTCC	4 cut(s)	154, 368, 890, 1842
Lsp1109I	GCAGC	5 cut(s)	541, 796, 830, 897, 1600
LweI	GCATC	9 cut(s)	259, 394, 409, 784, 897, 1118, 1129, 1408, 2323
MabI	ACCWGGT	2 cut(s)	883, 991
MaeII	ACGT	3 cut(s)	9, 598, 2251
MaeIII	GTNAC	4 cut(s)	842, 995, 1584, 1983
MboII	GAAGA	9 cut(s)	116, 224, 233, 719, 1380, 1479, 1937, 2255, 2309
MfeI	CAATTG	1 cut(s)	2040
MflI	RGATCY	5 cut(s)	688, 1223, 1277, 1313, 1532
MhlI	GDGCHC	5 cut(s)	895, 1006, 1640, 1675, 1754
MlyI	GAGTC	6 cut(s)	1189, 1357, 1366, 1592, 2360, 2369
MmeI	TCCRAC	5 cut(s)	1103, 1385, 1510, 2343, 2349
Mph1103I	ATGCAT	1 cut(s)	2077
MslI	CAYNNNNRTG	2 cut(s)	390, 1524
MspA1I	CMGCKG	1 cut(s)	1613
MspCI	CTTAAG	1 cut(s)	824
MspI	CCGG	1 cut(s)	1920
MspR9I	CCNGG	8 cut(s)	141, 201, 885, 993, 1059, 1921, 2192, 2342
MunI	CAATTG	1 cut(s)	2040
MvaI	CCWGG	7 cut(s)	141, 201, 885, 993, 1059, 2192, 2342
MwoI	GCNNNNNNNGC	9 cut(s)	170, 347, 563, 815, 818, 1894, 2067, 2174, 2210
NciI	CCSGG	1 cut(s)	1921
NcoI	CCATGG	1 cut(s)	1168
NdeI	CATATG	1 cut(s)	391
NlaIV	GGNNCC	9 cut(s)	690, 970, 1279, 1608, 1609, 1638, 1639, 1867, 1868
NmuCI	GTSAC	2 cut(s)	842, 1584
NsbI	TGCGCA	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	2077
NspI	RCATGY	3 cut(s)	298, 1448, 1717
PaeI	GCATGC	1 cut(s)	1448
PciI	ACATGT	1 cut(s)	1713
PciSI	GCTCTTC	1 cut(s)	1492
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PfeI	GAWTC	6 cut(s)	449, 919, 941, 2187, 2263, 2372
Pfl23II	CGTACG	1 cut(s)	1791
PflMI	CCANNNNNTGG	3 cut(s)	82, 1411, 2393
PkrI	GCNGC	8 cut(s)	251, 556, 811, 820, 912, 1565, 1615, 1993
PleI	GAGTC	6 cut(s)	1188, 1357, 1365, 1591, 2360, 2368
PpsI	GAGTC	6 cut(s)	1188, 1357, 1365, 1591, 2360, 2368
PpuMI	RGGWCCY	2 cut(s)	1607, 1866
PscI	ACATGT	1 cut(s)	1713
PshAI	GACNNNNGTC	1 cut(s)	714
PshBI	ATTAAT	2 cut(s)	657, 1943
Psp124BI	GAGCTC	1 cut(s)	895
Psp1406I	AACGTT	1 cut(s)	2251
Psp5II	RGGWCCY	2 cut(s)	1607, 1866
Psp6I	CCWGG	7 cut(s)	139, 199, 883, 991, 1057, 2190, 2340
PspGI	CCWGG	7 cut(s)	139, 199, 883, 991, 1057, 2190, 2340
PspLI	CGTACG	1 cut(s)	1791
PspN4I	GGNNCC	9 cut(s)	690, 970, 1279, 1608, 1609, 1638, 1639, 1867, 1868
PspOMI	GGGCCC	1 cut(s)	1636
PspPI	GGNCC	6 cut(s)	1337, 1607, 1636, 1637, 1787, 1866
PspPPI	RGGWCCY	2 cut(s)	1607, 1866
PstI	CTGCAG	1 cut(s)	814
PsuI	RGATCY	5 cut(s)	688, 1223, 1277, 1313, 1532
RsaI	GTAC	6 cut(s)	19, 500, 1038, 1793, 1970, 2017
RsaNI	GTAC	6 cut(s)	18, 499, 1037, 1792, 1969, 2016
RseI	CAYNNNNRTG	2 cut(s)	390, 1524
SacI	GAGCTC	1 cut(s)	895
SalI	GTCGAC	1 cut(s)	879
SapI	GCTCTTC	1 cut(s)	1492
SatI	GCNGC	8 cut(s)	250, 555, 810, 819, 911, 1564, 1614, 1992
Sau96I	GGNCC	6 cut(s)	1337, 1607, 1636, 1637, 1787, 1866
SchI	GAGTC	6 cut(s)	1189, 1357, 1366, 1592, 2360, 2369
ScrFI	CCNGG	8 cut(s)	141, 201, 885, 993, 1059, 1921, 2192, 2342
SduI	GDGCHC	5 cut(s)	895, 1006, 1640, 1675, 1754
SexAI	ACCWGGT	2 cut(s)	883, 991
SfaNI	GCATC	9 cut(s)	259, 394, 409, 784, 897, 1118, 1129, 1408, 2323
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	2 cut(s)	1607, 1866
SmiMI	CAYNNNNRTG	2 cut(s)	390, 1524
SmlI	CTYRAG	2 cut(s)	824, 1306
SmoI	CTYRAG	2 cut(s)	824, 1306
SphI	GCATGC	1 cut(s)	1448
SsiI	CCGC	6 cut(s)	173, 249, 1340, 1564, 1611, 1991
SspI	AATATT	2 cut(s)	723, 1957
SstI	GAGCTC	1 cut(s)	895
StyD4I	CCNGG	8 cut(s)	139, 199, 883, 991, 1057, 1919, 2190, 2340
StyI	CCWWGG	3 cut(s)	1168, 1273, 2172
TaaI	ACNGT	3 cut(s)	320, 482, 1141
TaiI	ACGT	3 cut(s)	12, 601, 2254
TaqI	TCGA	7 cut(s)	559, 880, 898, 955, 1933, 1976, 2185
TatI	WGTACW	2 cut(s)	498, 1968
TauI	GCSGC	3 cut(s)	252, 1566, 1994
TfiI	GAWTC	6 cut(s)	449, 919, 941, 2187, 2263, 2372
TscAI	CASTG	6 cut(s)	196, 213, 508, 969, 1144, 1416
TseFI	GTSAC	2 cut(s)	842, 1584
TseI	GCWGC	5 cut(s)	554, 809, 818, 910, 1613
Tsp45I	GTSAC	2 cut(s)	842, 1584
TspDTI	ATGAA	7 cut(s)	720, 954, 1541, 2016, 2252, 2256, 2364
TspGWI	ACGGA	3 cut(s)	704, 1054, 1236
TspRI	CASTG	6 cut(s)	196, 213, 508, 969, 1144, 1416
Van91I	CCANNNNNTGG	3 cut(s)	82, 1411, 2393
Vha464I	CTTAAG	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	1607, 1866
VspI	ATTAAT	2 cut(s)	657, 1943
XapI	RAATTY	3 cut(s)	782, 1651, 2224
XceI	RCATGY	3 cut(s)	298, 1448, 1717
XcmI	CCANNNNNNNNNTGG	1 cut(s)	996
XmiI	GTMKAC	1 cut(s)	880
Zsp2I	ATGCAT	1 cut(s)	2077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.