Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001229

Physical Location & Seq

Genomic Coordinates Reverse (-)

12515847 .. 12522848

Gene Structure 7002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1139300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2541 bp

ATGGAAGCATTGCGGGCCTTCAAGGTTCCATCTGCTAACAATCCTAGAAAATCTGAAAGTAAAGCATGGGGGACCCTTCGTGCAACTGAGGCATACCATGAATCAAGTAATACTAGCTTGTTTTCGAGTTTGTTACCTGTCCTTCCACATGAAAAGTTGAACTTTTCTGTTTCGGAGCATTTTGGTCAGCCTGTTGATGATAGTTTACCCAAATTAAACAATGTCAAGCATGAAAATGAGGCTAAGGATCCACTTGAAAATGATGAATCAAATGCATTCGGGGTCATGCTTCCTGATGATGAAGATGATCTCTTAGCAGGCATAACAGATGATTTTGATCTAAGACGATTGCCTAATCAGCTGGAGGAGATGGAAGAGTACGATCTGTTTGGAAGTGGAGGTGGAATGGAATTGGATTATGAGTCCCAGGATAGCCTTGGTATTGGCATGTCAAAACTAGGCATATCTGATGGGGTTGTTCCAAATGGGATTGGTCTTTATGCCCTTCCAAACGGTGTGGGAGCCGTGGCTGGGGAGCACCCGTATGGAGAGCATCCATCTAGAACCTTGTTTGTTAGAAATATCAACAGTAATGTTGAGGACTCTGAATTGAGAACTCTATTTGAGCAATATGGGGATATCAGAACTTTATACACTGCATGCAAGCATAGGGGCTTCGTGATGATATCTTACTACGACATCCGAGCCTCTCGCACTGCAATGCGTGCGTTACAGAACAAGCCCTTGAGACGGAGGAAACTCGACATTCATTTTTCAATTCCCAAGGACAACCCGTCAGAAAAGGATATCAACCAAGGAACTCTTGTGGTGTTTAATTTGGATGCATCAGTGTCAAATGATGACCTTCGACAGATATTTGGGGCTTACGGGGAAGTCAAAGAGATCCGGGAAACCCCACACAAGAGACATCATAAATTCATTGAGTTTTATGATGTTAGAGCTGCAGAGGCAGCTTTAAGGGCATTAAATAGGAGTGACATAGCTGGGAAACGCATAAAACTCGAACACAGCCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTTACTCAAGAGCTTGAACAAGAAGAAACTCGGAGTTTCAGGCATCAAGTGGGTTCACCTGTGACCAACTCTCCTCCAGGTACCTGGGCACATATTGGAAGCCCCATTGAGCATAATCAGTATGCTTTTAGTAAGTCTCCGGGTCTGGGAAGCCTCAGTCCAGACAGTAACCATTTGCCTGGGTTAGCTTCGATTCTCCCAGCTCATTTTTCTAACTCTCCAAAGATTGCGCCTATTGGTAAGGACCAAGGAAGGGCAAACCATATAAATCAGATGTATAGCAACTCTCCATCAACACAAGGAGCAGCGTATCAGCATTCTCATTCGTATCCAGAGCAGAAATTAAGTGCAAGTCCAGGTCCCATCTCATTGGGTGAGTCAAATTCAACTTCATCAGGGATTGGAACTTTGTCAGGTCCTCAGTTTCTCTGGGGCAGTCCATCTCCATCTCCTTATGCTGAGCCTAATTCTTCTGCCTGCCCAACCTCGTCTGCGGGGCATCCATTTTCATCCAGTGGACAGGGGCAAGGCTTTCCATTGACCAGCCGGCATGGCTCTTTCCTCAGTTCACACAACCATCATGTGGGATCTGCTCCATCCGGTGGTGTTCCTCTAGAGAGGCATTTTGGCTTTTTCCCAGAGTCACCAGAAACATCCTTCATGAATCCAGCGTTTGGGGGCATGGGTTTAAGTCGCAACAGTGGGAATTACATGATGAACATGGGTGGTCGTGCAACTTTGAGTGCTGGTGTTGGTCTTCCTGGAAACATTACTGAAAATGGCTCACCTAGTTTCAGAATGATGTCAATGCCAATGCATGGTCCTTTGTACCTTGGGAATGGTTCATATACTGGACCTGCAGCAACCATTAATGAGATGTTGGCTGATCGTGGTAGAAGTCGGCGAATAGAGAATCCTGGGAATCAGATGGATAGCAAAAAGCAGTATCAACTTGATATAGATAAAATTGTCAGTGGGGAAGATACTAGGACTACTTTAATGATAAAAAACATCCCGAACAAGTACACTTCCAAAATGTTGCTGGCTGCTATTGATGAAAACCATCGTGGTACATACGACTTTCTCTACTTGCCAATTGACTTTAAGAATAAGTGCAATGTGGGTTATGCTTTCATAAATATGGTGTCTCCTACCCACATTATAGCCTTTTATGAGGCATTTAATGGGAAGAAGTGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCATTGGCATATGCACGAATCCAGGGCAAAACTGCCCTTGTGACTCATTTTCAGAATTCAAGCCTAATGAATGAGGACAAGCGTTGCCGGCCCATTCTCTTCCACTCGGAGGGCCAAGAGACTACTGACCAGGAAAATTACCTTTCCAGAAATTTGAACATATGTATTCGGCAGCCAGATGGATCTTACTCAGGAGACTCATTGGACAGCCCAAAGGGGGATCTGGATGAGAAGCCAGAGAACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

847

Amino Acids

93.1

Weight (kDa)

6.14

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	190 - 254	1.8e-09	RNA recognition motif
RRM_5	PF13893	272 - 364	5.9e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	275 - 340	3e-11	RNA recognition motif
RRM_2	PF04059	686 - 782	5.7e-55	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29400 AT1G29400 AT1G29400
fragaria_vesca	FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250
malus_domestica	MD05G1291700.v1.1 MD09G1151600.v1.1 MD10G1267700.v1.1 MD17G1139300.v1.1
prunus_persica	Prupe.3G172900_v2.0.a1 Prupe.4G073800_v2.0.a1
pyrus_communis	pycom05g26820 pycom09g07120 pycom10g22380 pycom17g13240
rosa_chinensis	RchiOBHm_Chr2g0151511 RchiOBHm_Chr5g0012911
rosa_laevigata	RLG00000020556 RLG00000031968
rosa_multiflora	Rmu_sc0000940.1_g000021 Rmu_sc0016318.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063670 Rroxscaffold_2G00096390
rosa_rugosa	Rorug02G0426600 Rorug02G0426700 Rorug02G0426800 Rorug05G0005100 Rorug05G0005100 Rorug05G0005100
rosa_samantha	Rh2AG487500 Rh2BG499900 Rh2CG474000 Rh2DG511100 Rh5AG099400 Rh5BG096000 Rh5CG108300 Rh5DG094700
rosa_wichuraiana	Rw2G039960 Rw5G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1933
Acc65I	GGTACC	1 cut(s)	1148
AccB1I	GGYRCC	1 cut(s)	1148
AccB7I	CCANNNNNTGG	4 cut(s)	1651, 1670, 1742, 1886
AciI	CCGC	3 cut(s)	13, 1033, 1562
AclWI	GGATC	6 cut(s)	242, 255, 898, 1663, 2482, 2520
AcsI	RAATTY	4 cut(s)	935, 1450, 2347, 2443
AfaI	GTAC	5 cut(s)	380, 1150, 1898, 2093, 2140
AgsI	TTSAA	8 cut(s)	22, 160, 257, 777, 1085, 1455, 2352, 2449
AhdI	GACNNNNNGTC	1 cut(s)	793
AluBI	AGCT	8 cut(s)	117, 361, 962, 974, 1004, 1081, 1256, 1271
AluI	AGCT	8 cut(s)	117, 361, 962, 974, 1004, 1081, 1256, 1271
Alw21I	GWGCWC	2 cut(s)	540, 1048
Alw26I	GTCTC	6 cut(s)	742, 919, 1209, 2220, 2405, 2481
AlwI	GGATC	6 cut(s)	242, 255, 898, 1663, 2482, 2520
AoxI	GGCC	3 cut(s)	15, 2381, 2404
ApeKI	GCWGC	6 cut(s)	962, 971, 1373, 1928, 2114, 2464
ApoI	RAATTY	4 cut(s)	935, 1450, 2347, 2443
AseI	ATTAAT	1 cut(s)	1938
Asp718I	GGTACC	1 cut(s)	1148
AspLEI	GCGC	1 cut(s)	1300
AspS9I	GGNCC	9 cut(s)	15, 72, 1312, 1427, 1484, 1889, 1922, 2382, 2404
AsuC2I	CCSGG	2 cut(s)	908, 1209
AsuHPI	GGTGA	4 cut(s)	1116, 1454, 1704, 1845
AvaII	GGWCC	6 cut(s)	72, 1312, 1427, 1484, 1889, 1922
BaeGI	GKGCMC	1 cut(s)	1159
BamHI	GGATCC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	1148
BbsI	GAAGAC	1 cut(s)	1817
Bbv12I	GWGCWC	2 cut(s)	540, 1048
BbvI	GCAGC	6 cut(s)	949, 983, 1385, 1940, 2101, 2476
BceAI	ACGGC	1 cut(s)	509
BcgI	CGANNNNNNTGC	2 cut(s)	1003, 1037
BciVI	GTATCC	1 cut(s)	1407
BcnI	CCSGG	2 cut(s)	908, 1209
BcoDI	GTCTC	6 cut(s)	742, 919, 1209, 2220, 2405, 2481
BfaI	CTAG	7 cut(s)	45, 114, 458, 561, 1682, 1857, 2055
BfmI	CTRYAG	2 cut(s)	963, 1926
BfuAI	ACCTGC	1 cut(s)	1933
BfuI	GTATCC	1 cut(s)	1407
BglI	GCCNNNNNGGC	1 cut(s)	1620
BisI	GCNGC	7 cut(s)	963, 972, 1033, 1374, 1929, 2115, 2465
BlpI	GCTNAGC	1 cut(s)	1527
BlsI	GCNGC	7 cut(s)	964, 973, 1034, 1375, 1930, 2116, 2466
Bme18I	GGWCC	6 cut(s)	72, 1312, 1427, 1484, 1889, 1922
BmeRI	GACNNNNNGTC	1 cut(s)	793
BmgT120I	GGNCC	9 cut(s)	15, 72, 1312, 1427, 1484, 1889, 1922, 2382, 2404
BmiI	GGNNCC	7 cut(s)	27, 73, 74, 249, 523, 1150, 1429
BmsI	GCATC	6 cut(s)	562, 832, 854, 1050, 1120, 1576
BpiI	GAAGAC	1 cut(s)	1817
BpmI	CTGGAG	2 cut(s)	383, 1128
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	1527
BpuEI	CTTGAG	2 cut(s)	766, 1059
BpuMI	CCSGG	2 cut(s)	908, 1209
BsaAI	YACGTR	1 cut(s)	1049
BsaBI	GATNNNNATC	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	1667
BsaXI	ACNNNNNCTCC	4 cut(s)	527, 557, 1123, 1153
Bse118I	RCCGGY	2 cut(s)	1614, 2379
Bse1I	ACTGG	2 cut(s)	1581, 1924
Bse3DI	GCAATG	3 cut(s)	8, 726, 2191
Bse8I	GATNNNNATC	1 cut(s)	336
BseGI	GGATG	9 cut(s)	553, 699, 847, 1567, 1577, 1664, 1721, 2079, 2524
BseJI	GATNNNNATC	1 cut(s)	336
BseMI	GCAATG	3 cut(s)	8, 726, 2191
BseMII	CTCAG	6 cut(s)	78, 1237, 1502, 1518, 1645, 2496
BseNI	ACTGG	2 cut(s)	1581, 1924
BseRI	GAGGAG	2 cut(s)	380, 1131
BseSI	GKGCMC	1 cut(s)	1159
BseXI	GCAGC	6 cut(s)	949, 983, 1385, 1940, 2101, 2476
BseYI	CCCAGC	3 cut(s)	530, 1004, 1267
BshFI	GGCC	3 cut(s)	17, 2383, 2406
BshNI	GGYRCC	1 cut(s)	1148
BsiHKAI	GWGCWC	2 cut(s)	540, 1048
BsiSI	CCGG	5 cut(s)	907, 1208, 1615, 1668, 2380
BslFI	GGGAC	3 cut(s)	85, 409, 1413
BsmAI	GTCTC	6 cut(s)	742, 919, 1209, 2220, 2405, 2481
BsmBI	CGTCTC	1 cut(s)	742
BsmFI	GGGAC	3 cut(s)	85, 409, 1413
BsmI	GAATGC	2 cut(s)	275, 1384
BsnI	GGCC	3 cut(s)	17, 2383, 2406
Bsp1286I	GDGCHC	3 cut(s)	540, 1048, 1159
Bsp143I	GATC	9 cut(s)	247, 307, 337, 382, 903, 1655, 1954, 2474, 2512
Bsp1720I	GCTNAGC	1 cut(s)	1527
BspACI	CCGC	3 cut(s)	13, 1033, 1562
BspANI	GGCC	3 cut(s)	17, 2383, 2406
BspCNI	CTCAG	6 cut(s)	79, 1236, 1501, 1519, 1644, 2495
BspHI	TCATGA	1 cut(s)	1728
BspLI	GGNNCC	7 cut(s)	27, 73, 74, 249, 523, 1150, 1429
BspMAI	CTGCAG	2 cut(s)	967, 1930
BspMI	ACCTGC	1 cut(s)	1933
BspPI	GGATC	6 cut(s)	242, 255, 898, 1663, 2482, 2520
BspT107I	GGYRCC	1 cut(s)	1148
BsrDI	GCAATG	3 cut(s)	8, 726, 2191
BsrFI	RCCGGY	2 cut(s)	1614, 2379
BsrI	ACTGG	2 cut(s)	1581, 1924
BssAI	RCCGGY	2 cut(s)	1614, 2379
BssMI	GATC	9 cut(s)	247, 307, 337, 382, 903, 1655, 1954, 2474, 2512
BssT1I	CCWWGG	5 cut(s)	436, 783, 814, 1315, 1900
Bst4CI	ACNGT	6 cut(s)	515, 590, 1235, 1769, 2279, 2537
Bst6I	CTCTTC	2 cut(s)	369, 2396
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstBAI	YACGTR	1 cut(s)	1049
BstC8I	GCNNGC	9 cut(s)	15, 319, 661, 665, 726, 1546, 1616, 2112, 2381
BstDEI	CTNAG	9 cut(s)	87, 243, 313, 341, 1223, 1488, 1527, 1631, 2482
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	9 cut(s)	553, 699, 847, 1567, 1577, 1664, 1721, 2079, 2524
BstHHI	GCGC	1 cut(s)	1300
BstKTI	GATC	9 cut(s)	250, 310, 340, 385, 906, 1658, 1957, 2477, 2515
BstMAI	GTCTC	6 cut(s)	742, 919, 1209, 2220, 2405, 2481
BstMBI	GATC	9 cut(s)	247, 307, 337, 382, 903, 1655, 1954, 2474, 2512
BstNSI	RCATGY	2 cut(s)	451, 663
BstSFI	CTRYAG	2 cut(s)	963, 1926
BstSLI	GKGCMC	1 cut(s)	1159
BstV1I	GCAGC	6 cut(s)	949, 983, 1385, 1940, 2101, 2476
BstV2I	GAAGAC	1 cut(s)	1817
BstX2I	RGATCY	5 cut(s)	247, 903, 1655, 2474, 2512
BstXI	CCANNNNNNTGG	3 cut(s)	1152, 1247, 1438
BstYI	RGATCY	5 cut(s)	247, 903, 1655, 2474, 2512
BsuI	GTATCC	1 cut(s)	1407
BsuRI	GGCC	3 cut(s)	17, 2383, 2406
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	9 cut(s)	553, 699, 847, 1567, 1577, 1664, 1721, 2079, 2524
BtsI	GCAGTG	2 cut(s)	654, 714
BtsIMutI	CAGTG	7 cut(s)	654, 714, 855, 1588, 1774, 2047, 2284
BveI	ACCTGC	1 cut(s)	1933
Cac8I	GCNNGC	9 cut(s)	15, 319, 661, 665, 726, 1546, 1616, 2112, 2381
CciI	TCATGA	1 cut(s)	1728
CfoI	GCGC	1 cut(s)	1300
Cfr10I	RCCGGY	2 cut(s)	1614, 2379
Cfr13I	GGNCC	9 cut(s)	15, 72, 1312, 1427, 1484, 1889, 1922, 2382, 2404
Csp6I	GTAC	5 cut(s)	379, 1149, 1897, 2092, 2139
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviQI	GTAC	5 cut(s)	379, 1149, 1897, 2092, 2139
DdeI	CTNAG	9 cut(s)	87, 243, 313, 341, 1223, 1488, 1527, 1631, 2482
DpnI	GATC	9 cut(s)	249, 309, 339, 384, 905, 1657, 1956, 2476, 2514
DpnII	GATC	9 cut(s)	247, 307, 337, 382, 903, 1655, 1954, 2474, 2512
DriI	GACNNNNNGTC	1 cut(s)	793
Eam1104I	CTCTTC	2 cut(s)	369, 2396
Eam1105I	GACNNNNNGTC	1 cut(s)	793
EarI	CTCTTC	2 cut(s)	369, 2396
Eco130I	CCWWGG	5 cut(s)	436, 783, 814, 1315, 1900
Eco32I	GATATC	3 cut(s)	640, 687, 808
Eco47I	GGWCC	6 cut(s)	72, 1312, 1427, 1484, 1889, 1922
EcoO109I	RGGNCCY	3 cut(s)	72, 1427, 1484
EcoRI	GAATTC	1 cut(s)	2347
EcoRV	GATATC	3 cut(s)	640, 687, 808
EcoT14I	CCWWGG	5 cut(s)	436, 783, 814, 1315, 1900
EcoT22I	ATGCAT	3 cut(s)	277, 847, 1887
ErhI	CCWWGG	5 cut(s)	436, 783, 814, 1315, 1900
Esp3I	CGTCTC	1 cut(s)	742
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 807, 839
FaqI	GGGAC	3 cut(s)	85, 409, 1413
FauI	CCCGC	2 cut(s)	6, 1555
FauNDI	CATATG	2 cut(s)	2302, 2453
Fnu4HI	GCNGC	7 cut(s)	963, 972, 1033, 1374, 1929, 2115, 2465
FokI	GGATG	9 cut(s)	540, 686, 854, 1554, 1564, 1651, 1708, 2066, 2531
Fsp4HI	GCNGC	7 cut(s)	963, 972, 1033, 1374, 1929, 2115, 2465
FspBI	CTAG	7 cut(s)	45, 114, 458, 561, 1682, 1857, 2055
GlaI	GCGC	1 cut(s)	1299
GluI	GCNGC	7 cut(s)	963, 972, 1033, 1374, 1929, 2115, 2465
GsaI	CCCAGC	3 cut(s)	534, 1008, 1271
GsuI	CTGGAG	2 cut(s)	383, 1128
HaeIII	GGCC	3 cut(s)	17, 2383, 2406
HapII	CCGG	5 cut(s)	907, 1208, 1615, 1668, 2380
HhaI	GCGC	1 cut(s)	1300
Hin6I	GCGC	1 cut(s)	1298
HinP1I	GCGC	1 cut(s)	1298
HpaII	CCGG	5 cut(s)	907, 1208, 1615, 1668, 2380
HphI	GGTGA	4 cut(s)	1116, 1454, 1704, 1845
Hpy166II	GTNNAC	5 cut(s)	206, 1124, 1586, 1637, 2094
Hpy8I	GTNNAC	5 cut(s)	206, 1124, 1586, 1637, 2094
HpyAV	CCTTC	7 cut(s)	28, 86, 152, 515, 875, 1314, 1735
HpyCH4III	ACNGT	6 cut(s)	515, 590, 1235, 1769, 2279, 2537
HpyCH4IV	ACGT	1 cut(s)	1048
HpyF3I	CTNAG	9 cut(s)	87, 243, 313, 341, 1223, 1488, 1527, 1631, 2482
HpySE526I	ACGT	1 cut(s)	1048
HspAI	GCGC	1 cut(s)	1298
KflI	GGGWCCC	1 cut(s)	72
KpnI	GGTACC	1 cut(s)	1152
KroI	GCCGGC	2 cut(s)	1614, 2379
KroNI	GCCGGC	2 cut(s)	1616, 2381
Kzo9I	GATC	9 cut(s)	247, 307, 337, 382, 903, 1655, 1954, 2474, 2512
LmnI	GCTCC	6 cut(s)	175, 521, 535, 1043, 1370, 1666
Lsp1109I	GCAGC	6 cut(s)	949, 983, 1385, 1940, 2101, 2476
LweI	GCATC	6 cut(s)	562, 832, 854, 1050, 1120, 1576
MaeI	CTAG	7 cut(s)	45, 114, 458, 561, 1682, 1857, 2055
MaeII	ACGT	1 cut(s)	1048
MaeIII	GTNAC	7 cut(s)	132, 729, 995, 1129, 1235, 1710, 2332
MalI	GATC	9 cut(s)	249, 309, 339, 384, 905, 1657, 1956, 2476, 2514
MboI	GATC	9 cut(s)	247, 307, 337, 382, 903, 1655, 1954, 2474, 2512
MboII	GAAGA	8 cut(s)	314, 386, 1103, 1530, 1817, 2060, 2269, 2383
MfeI	CAATTG	1 cut(s)	2163
MflI	RGATCY	5 cut(s)	247, 903, 1655, 2474, 2512
MhlI	GDGCHC	3 cut(s)	540, 1048, 1159
MlyI	GAGTC	6 cut(s)	431, 596, 1454, 1718, 2329, 2483
Mph1103I	ATGCAT	3 cut(s)	277, 847, 1887
MroNI	GCCGGC	2 cut(s)	1614, 2379
MslI	CAYNNNNRTG	4 cut(s)	234, 543, 719, 2207
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	5 cut(s)	907, 1208, 1615, 1668, 2380
MunI	CAATTG	1 cut(s)	2163
Mva1269I	GAATGC	2 cut(s)	275, 1384
NaeI	GCCGGC	2 cut(s)	1616, 2381
NciI	CCSGG	2 cut(s)	908, 1209
NdeI	CATATG	2 cut(s)	2302, 2453
NdeII	GATC	9 cut(s)	247, 307, 337, 382, 903, 1655, 1954, 2474, 2512
NgoMIV	GCCGGC	2 cut(s)	1614, 2379
NlaIV	GGNNCC	7 cut(s)	27, 73, 74, 249, 523, 1150, 1429
NmuCI	GTSAC	4 cut(s)	995, 1129, 1710, 2332
NsiI	ATGCAT	3 cut(s)	277, 847, 1887
NspI	RCATGY	2 cut(s)	451, 663
PaeI	GCATGC	1 cut(s)	663
PagI	TCATGA	1 cut(s)	1728
PctI	GAATGC	2 cut(s)	275, 1384
PdiI	GCCGGC	2 cut(s)	1616, 2381
PfeI	GAWTC	7 cut(s)	101, 266, 1261, 1732, 1981, 1990, 2310
PflMI	CCANNNNNTGG	4 cut(s)	1651, 1670, 1742, 1886
PfoI	TCCNGGA	2 cut(s)	906, 1828
PkrI	GCNGC	7 cut(s)	964, 973, 1034, 1375, 1930, 2116, 2466
PleI	GAGTC	6 cut(s)	430, 596, 1453, 1717, 2329, 2483
PpsI	GAGTC	6 cut(s)	430, 596, 1453, 1717, 2329, 2483
Ppu21I	YACGTR	1 cut(s)	1049
PpuMI	RGGWCCY	3 cut(s)	72, 1427, 1484
PshBI	ATTAAT	1 cut(s)	1938
Psp5II	RGGWCCY	3 cut(s)	72, 1427, 1484
PspFI	CCCAGC	3 cut(s)	530, 1004, 1267
PspN4I	GGNNCC	7 cut(s)	27, 73, 74, 249, 523, 1150, 1429
PspPI	GGNCC	9 cut(s)	15, 72, 1312, 1427, 1484, 1889, 1922, 2382, 2404
PspPPI	RGGWCCY	3 cut(s)	72, 1427, 1484
PstI	CTGCAG	2 cut(s)	967, 1930
PsuI	RGATCY	5 cut(s)	247, 903, 1655, 2474, 2512
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	5 cut(s)	380, 1150, 1898, 2093, 2140
RsaNI	GTAC	5 cut(s)	379, 1149, 1897, 2092, 2139
RseI	CAYNNNNRTG	4 cut(s)	234, 543, 719, 2207
SatI	GCNGC	7 cut(s)	963, 972, 1033, 1374, 1929, 2115, 2465
Sau3AI	GATC	9 cut(s)	247, 307, 337, 382, 903, 1655, 1954, 2474, 2512
Sau96I	GGNCC	9 cut(s)	15, 72, 1312, 1427, 1484, 1889, 1922, 2382, 2404
SchI	GAGTC	6 cut(s)	431, 596, 1454, 1718, 2329, 2483
SduI	GDGCHC	3 cut(s)	540, 1048, 1159
SfaNI	GCATC	6 cut(s)	562, 832, 854, 1050, 1120, 1576
SfcI	CTRYAG	2 cut(s)	963, 1926
SinI	GGWCC	6 cut(s)	72, 1312, 1427, 1484, 1889, 1922
SmiMI	CAYNNNNRTG	4 cut(s)	234, 543, 719, 2207
SmlI	CTYRAG	2 cut(s)	745, 1074
SmoI	CTYRAG	2 cut(s)	745, 1074
SphI	GCATGC	1 cut(s)	663
SsiI	CCGC	3 cut(s)	13, 1033, 1562
SspMI	CTAG	7 cut(s)	45, 114, 458, 561, 1682, 1857, 2055
StyI	CCWWGG	5 cut(s)	436, 783, 814, 1315, 1900
TaaI	ACNGT	6 cut(s)	515, 590, 1235, 1769, 2279, 2537
TaiI	ACGT	1 cut(s)	1051
TaqI	TCGA	5 cut(s)	125, 762, 868, 1023, 1259
TatI	WGTACW	1 cut(s)	2091
TauI	GCSGC	1 cut(s)	1035
TfiI	GAWTC	7 cut(s)	101, 266, 1261, 1732, 1981, 1990, 2310
TscAI	CASTG	7 cut(s)	661, 721, 855, 1588, 1774, 2047, 2284
TseFI	GTSAC	4 cut(s)	995, 1129, 1710, 2332
TseI	GCWGC	6 cut(s)	962, 971, 1373, 1928, 2114, 2464
Tsp45I	GTSAC	4 cut(s)	995, 1129, 1710, 2332
TspGWI	ACGGA	1 cut(s)	766
TspRI	CASTG	7 cut(s)	661, 721, 855, 1588, 1774, 2047, 2284
Van91I	CCANNNNNTGG	4 cut(s)	1651, 1670, 1742, 1886
VpaK11BI	GGWCC	6 cut(s)	72, 1312, 1427, 1484, 1889, 1922
VspI	ATTAAT	1 cut(s)	1938
XapI	RAATTY	4 cut(s)	935, 1450, 2347, 2443
XbaI	TCTAGA	2 cut(s)	560, 1681
XceI	RCATGY	2 cut(s)	451, 663
XcmI	CCANNNNNNNNNTGG	2 cut(s)	434, 2107
XspI	CTAG	7 cut(s)	45, 114, 458, 561, 1682, 1857, 2055
Zsp2I	ATGCAT	3 cut(s)	277, 847, 1887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.