Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001229

Physical Location & Seq

Genomic Coordinates Forward (+)

65438432 .. 65445462

Gene Structure 7031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGGAGAAACATTTAGAAGATATTAAAATGGGTCGTTCTGAAGGGGCCTTTAAGATTCCATCGGTCAATATTCCTAGAAAATTAGAGAATACTGCATGGGGCATCCTTCGTACAACTGAGGCATATCATGCATCAAGTGATACTAGCTTGTTTTCGAGCTCATTGCCCGTCCTTCCACATGAAAAGTTGAATTTTGCCGATTCGGAGCATTTGCGTCAGTCTGTTGATGATAGCTTGCCCAATCTAGTTAAAGTTGACCAGGACATTGAGATTAAAAATCCACTTGAGAATGCTGAATCAAATTCGTTCAGAATTACACTTCCCGATGATGAAGACGAGCTGTTAGCTGGCTTAACAGATGATTTTGATCTAAGTCGGCTGCCTAGTCATCTGGAGGAGATGGAAGAGTATGATCTCTTTGGCAGTGGTGGCGGAATGGAATTGGATTTTGAATTGCAAGATAGCCTTGGTATTGGTTTGTCAAAGCTAAGCATATCTGATGGGGTTAGTCCAAATGGTATTGGTCATTATGCTCTTCCAAATGGAGCGGGAACTGTGGCTGGAGAACATCCTTATGGGGAGCATCCTTCAAGGACCTTGTTCGTTAGAAATATCAATAGTAATGTTGAGGATTCCGAATTGAGATCTCTATTTGAGCAATATGGAGATATCAGAACTTTATATACTGCGTGCAAGCATAGGGGATTTGTGATGATATCATACTATGATATCCGATCTGCTCGCACTGCAATGCGTGCATTACAGAACAAGCCCTTGAGACGAAGAAAACTTGACATTCATTTTTCAATTCCCAAGGATAACCCTTCAGAAAAGGATATCAACCAAGGAACTCTTGTGGTTTTCAATTTGGATGCATCAGTGTCAAATGATGACCTTCGACAGATATTTGGGGCTTATGGAGAAGTCAAGGAGATCCGAGAAACACCACACAAGAGACACCATAAATTCATAGAGTTTTATGACGTTAGAGCTGCAGAGGTAGCTTTAAGAGCACTAAATAGGAGCGACATAGCTGGGAAACGTATAAAGCTTGAACCCAGCCGCCCTGGTGGAGCTCGAAGAAACTTGATGCAGCAACTAAGTCAAGAGCTTGACCAAGATGAAACTCGGAGTTTCCGACATCAAGTGGGTTCACCAATGACCAACTCTCCTCCAGGTACCTGGGCACAAATTGGAAGCCCCATTGAACATAATCAGCTTGGTTTTAGTAAGTCCCCAGGTCTGGGAAGCCTGAGTCCTGTAGACAGCAACAATTTACCTGGGTTAGCTTCAATTCTTCCAACTCATGTTCCTAACTCCCCAAAGATTGCACCTATTGGTAAAGACCAAGGAAGGTTGAACAATACGAGTCAGATATTTAGTAGCTCCGTTTCAACGCCAGGAGCAGCCTATTCCTTTCCTGAGCAGAAATTAAGCACTAGTCCAGGTCCCATCTCATATGGTGAGTCAAATTCAAATTCATCAGGTATTGGAACTTTGTCAGGTCCTCAGTTTCTCTGGGGAAGCCCAACTCCTTATTCCGAGCCCAAGTCTTCTGCCTGGCCAACATCATCTGTGGGACATCCGTTTTCATCTGGTGGACAGGGACAGGGTTTTCCATTCACTAGCCGGCAGAGCTCTTTCCTCAGTTCACACAACCATCATGTGGGATCTGCTCCATCTGGTGTTCCTCTGGATAGGCATTTTGGCTACTTCCCCGAATCACCTGAAACATCCTTCATGAATCCAATGTTTGGGGGCATGGGTTTAAGCCGCAACAATAGTAATTACATGATGAACATGGGTGGTCGTGCAACTATGAATGCTGGTGTTGGTCTTCCAGGAAACATTAGTGAAAATGGCTCTCCTAGTTTTAGAATGATGTCAATGCCAAAGCATAGTCCTGTGTACCTTGGGAATGGTTCTTACACTGGACCTGCAGCAACCATCAGTGAGCTATTTGCTGATCGTGGTAGGAGTCGGCGGGTTGAGAATAGTGGGAATCAAGTAGATAGCAAAAAGCAGTATCAACTTGATTTAGATAAAATTCTCCGCGGGGAAGACAGTAGGACTACTTTAATGATCAAAAACATCCCCAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010564 GO:0010638 GO:0033043 GO:0040008 GO:0040020 GO:0045787 GO:0045836 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051445 GO:0051446 GO:0051726 GO:0051783 GO:0051785 GO:0065007 GO:0090068 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_2

Protein Analysis

701

Amino Acids

76.86

Weight (kDa)

6.14

Isoelectric Point (pI)

58.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	200 - 264	1.1e-10	RNA recognition motif
RRM_5	PF13893	282 - 375	2e-06	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	285 - 350	1.6e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29400 AT1G29400 AT1G29400
fragaria_vesca	FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_3g06390 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250 FvH4_6g38250
malus_domestica	MD05G1291700.v1.1 MD09G1151600.v1.1 MD10G1267700.v1.1 MD17G1139300.v1.1
prunus_persica	Prupe.3G172900_v2.0.a1 Prupe.4G073800_v2.0.a1
pyrus_communis	pycom05g26820 pycom09g07120 pycom10g22380 pycom17g13240
rosa_chinensis	RchiOBHm_Chr2g0151511 RchiOBHm_Chr5g0012911
rosa_laevigata	RLG00000020556 RLG00000031968
rosa_multiflora	Rmu_sc0000940.1_g000021 Rmu_sc0016318.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063670 Rroxscaffold_2G00096390
rosa_rugosa	Rorug02G0426600 Rorug02G0426700 Rorug02G0426800 Rorug05G0005100 Rorug05G0005100 Rorug05G0005100
rosa_samantha	Rh2AG487500 Rh2BG499900 Rh2CG474000 Rh2DG511100 Rh5AG099400 Rh5BG096000 Rh5CG108300 Rh5DG094700
rosa_wichuraiana	Rw2G039960 Rw5G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1945
Acc65I	GGTACC	1 cut(s)	1178
AccB1I	GGYRCC	1 cut(s)	1178
AccB7I	CCANNNNNTGG	2 cut(s)	1666, 1754
AccBSI	CCGCTC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	1263
AccII	CGCG	1 cut(s)	2055
AciI	CCGC	7 cut(s)	432, 548, 1063, 1774, 1984, 2053, 2055
AclWI	GGATC	2 cut(s)	928, 1678
AcoI	YGGCCR	1 cut(s)	1562
AcsI	RAATTY	6 cut(s)	190, 301, 965, 1471, 1477, 2046
AcuI	CTGAAG	2 cut(s)	60, 810
AfaI	GTAC	3 cut(s)	112, 1180, 1910
AfiI	CCNNNNNNNGG	4 cut(s)	1243, 1244, 1666, 1754
AhlI	ACTAGT	1 cut(s)	1439
AjuI	GAANNNNNNNTTGG	2 cut(s)	1522, 1554
Alw21I	GWGCWC	4 cut(s)	161, 1015, 1078, 1640
Alw26I	GTCTC	2 cut(s)	772, 949
AlwI	GGATC	2 cut(s)	928, 1678
AoxI	GGCC	2 cut(s)	45, 1562
ApeKI	GCWGC	5 cut(s)	379, 992, 1093, 1406, 1940
ApoI	RAATTY	6 cut(s)	190, 301, 965, 1471, 1477, 2046
Asp718I	GGTACC	1 cut(s)	1178
AspS9I	GGNCC	5 cut(s)	45, 594, 1448, 1505, 1934
AsuHPI	GGTGA	3 cut(s)	1146, 1475, 1716
AvaII	GGWCC	4 cut(s)	594, 1448, 1505, 1934
BaeGI	GKGCMC	1 cut(s)	1189
BalI	TGGCCA	1 cut(s)	1564
BanI	GGYRCC	1 cut(s)	1178
BanII	GRGCYC	4 cut(s)	161, 1078, 1548, 1640
BbsI	GAAGAC	4 cut(s)	339, 1545, 1829, 2067
Bbv12I	GWGCWC	4 cut(s)	161, 1015, 1078, 1640
BbvI	GCAGC	5 cut(s)	366, 979, 1105, 1418, 1952
BccI	CCATC	7 cut(s)	67, 394, 494, 1460, 1668, 1687, 1955
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BclI	TGATCA	1 cut(s)	2082
BcoDI	GTCTC	2 cut(s)	772, 949
BcuI	ACTAGT	1 cut(s)	1439
BfaI	CTAG	7 cut(s)	75, 144, 245, 384, 1440, 1626, 1869
BfmI	CTRYAG	3 cut(s)	993, 1260, 1938
BfuAI	ACCTGC	1 cut(s)	1945
BglII	AGATCT	1 cut(s)	644
BisI	GCNGC	7 cut(s)	380, 993, 1063, 1094, 1407, 1774, 1941
BlpI	GCTNAGC	1 cut(s)	488
BlsI	GCNGC	7 cut(s)	381, 994, 1064, 1095, 1408, 1775, 1942
Bme18I	GGWCC	4 cut(s)	594, 1448, 1505, 1934
BmgT120I	GGNCC	5 cut(s)	45, 594, 1448, 1505, 1934
BmiI	GGNNCC	3 cut(s)	46, 1180, 1450
BmsI	GCATC	6 cut(s)	111, 140, 592, 862, 884, 1080
BpiI	GAAGAC	4 cut(s)	339, 1545, 1829, 2067
BpmI	CTGGAG	3 cut(s)	413, 582, 1158
Bpu10I	CCTNAGC	1 cut(s)	1422
Bpu1102I	GCTNAGC	1 cut(s)	488
BpuEI	CTTGAG	2 cut(s)	305, 796
BsaBI	GATNNNNATC	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	1153, 1183
Bsc4I	CCNNNNNNNGG	4 cut(s)	1243, 1244, 1666, 1754
Bse118I	RCCGGY	1 cut(s)	1629
Bse1I	ACTGG	1 cut(s)	1936
Bse3DI	GCAATG	2 cut(s)	161, 756
Bse8I	GATNNNNATC	1 cut(s)	366
BseGI	GGATG	7 cut(s)	102, 568, 583, 877, 1582, 1733, 2091
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	4 cut(s)	1243, 1244, 1666, 1754
BseMI	GCAATG	2 cut(s)	161, 756
BseMII	CTCAG	5 cut(s)	108, 1244, 1413, 1523, 1660
BseNI	ACTGG	1 cut(s)	1936
BseRI	GAGGAG	2 cut(s)	410, 1161
BseSI	GKGCMC	1 cut(s)	1189
BseXI	GCAGC	5 cut(s)	366, 979, 1105, 1418, 1952
BseYI	CCCAGC	2 cut(s)	1034, 1058
Bsh1236I	CGCG	1 cut(s)	2055
BshFI	GGCC	2 cut(s)	47, 1564
BshNI	GGYRCC	1 cut(s)	1178
BsiHKAI	GWGCWC	4 cut(s)	161, 1015, 1078, 1640
BsiSI	CCGG	1 cut(s)	1630
BslFI	GGGAC	4 cut(s)	1219, 1434, 1593, 1620
BslI	CCNNNNNNNGG	4 cut(s)	1243, 1244, 1666, 1754
BsmAI	GTCTC	2 cut(s)	772, 949
BsmBI	CGTCTC	1 cut(s)	772
BsmFI	GGGAC	4 cut(s)	1219, 1434, 1593, 1620
BsmI	GAATGC	2 cut(s)	295, 1828
BsnI	GGCC	2 cut(s)	47, 1564
Bsp1286I	GDGCHC	6 cut(s)	161, 1015, 1078, 1189, 1548, 1640
Bsp143I	GATC	8 cut(s)	367, 412, 644, 734, 933, 1670, 1966, 2082
Bsp1720I	GCTNAGC	1 cut(s)	488
BspACI	CCGC	7 cut(s)	432, 548, 1063, 1774, 1984, 2053, 2055
BspANI	GGCC	2 cut(s)	47, 1564
BspCNI	CTCAG	5 cut(s)	109, 1245, 1414, 1522, 1659
BspFNI	CGCG	1 cut(s)	2055
BspHI	TCATGA	1 cut(s)	1740
BspLI	GGNNCC	3 cut(s)	46, 1180, 1450
BspMAI	CTGCAG	2 cut(s)	997, 1942
BspMI	ACCTGC	1 cut(s)	1945
BspPI	GGATC	2 cut(s)	928, 1678
BspQI	GCTCTTC	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	1178
BsrBI	CCGCTC	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	161, 756
BsrFI	RCCGGY	1 cut(s)	1629
BsrI	ACTGG	1 cut(s)	1936
BssAI	RCCGGY	1 cut(s)	1629
BssMI	GATC	8 cut(s)	367, 412, 644, 734, 933, 1670, 1966, 2082
BssT1I	CCWWGG	5 cut(s)	466, 813, 844, 1348, 1912
Bst4CI	ACNGT	2 cut(s)	556, 2066
Bst6I	CTCTTC	2 cut(s)	399, 540
BstAPI	GCANNNNNTGC	2 cut(s)	128, 755
BstC8I	GCNNGC	7 cut(s)	236, 349, 691, 695, 742, 756, 1631
BstDEI	CTNAG	8 cut(s)	117, 371, 488, 1100, 1253, 1422, 1509, 1646
BstDSI	CCRYGG	1 cut(s)	2053
BstF5I	GGATG	7 cut(s)	102, 568, 583, 877, 1582, 1733, 2091
BstFNI	CGCG	1 cut(s)	2055
BstKTI	GATC	8 cut(s)	370, 415, 647, 737, 936, 1673, 1969, 2085
BstMAI	GTCTC	2 cut(s)	772, 949
BstMBI	GATC	8 cut(s)	367, 412, 644, 734, 933, 1670, 1966, 2082
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 429, 746, 755, 1001, 1010, 1635
BstSFI	CTRYAG	3 cut(s)	993, 1260, 1938
BstSLI	GKGCMC	1 cut(s)	1189
BstUI	CGCG	1 cut(s)	2055
BstV1I	GCAGC	5 cut(s)	366, 979, 1105, 1418, 1952
BstV2I	GAAGAC	4 cut(s)	339, 1545, 1829, 2067
BstX2I	RGATCY	3 cut(s)	644, 933, 1670
BstXI	CCANNNNNNTGG	1 cut(s)	1182
BstYI	RGATCY	3 cut(s)	644, 933, 1670
BsuRI	GGCC	2 cut(s)	47, 1564
BtgI	CCRYGG	1 cut(s)	2053
BtsCI	GGATG	7 cut(s)	102, 568, 583, 877, 1582, 1733, 2091
BtsI	GCAGTG	2 cut(s)	430, 744
BtsIMutI	CAGTG	5 cut(s)	430, 744, 885, 1929, 1957
BveI	ACCTGC	1 cut(s)	1945
Cac8I	GCNNGC	7 cut(s)	236, 349, 691, 695, 742, 756, 1631
CciI	TCATGA	1 cut(s)	1740
Cfr10I	RCCGGY	1 cut(s)	1629
Cfr13I	GGNCC	5 cut(s)	45, 594, 1448, 1505, 1934
Cfr42I	CCGCGG	1 cut(s)	2056
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	3 cut(s)	111, 1179, 1909
CviAII	CATG	9 cut(s)	96, 128, 179, 1307, 1664, 1741, 1762, 1792, 1801
CviQI	GTAC	3 cut(s)	111, 1179, 1909
DdeI	CTNAG	8 cut(s)	117, 371, 488, 1100, 1253, 1422, 1509, 1646
DpnI	GATC	8 cut(s)	369, 414, 646, 736, 935, 1672, 1968, 2084
DpnII	GATC	8 cut(s)	367, 412, 644, 734, 933, 1670, 1966, 2082
EaeI	YGGCCR	1 cut(s)	1562
Eam1104I	CTCTTC	2 cut(s)	399, 540
EarI	CTCTTC	2 cut(s)	399, 540
EciI	GGCGGA	1 cut(s)	447
Ecl136II	GAGCTC	3 cut(s)	159, 1076, 1638
Eco130I	CCWWGG	5 cut(s)	466, 813, 844, 1348, 1912
Eco24I	GRGCYC	4 cut(s)	161, 1078, 1548, 1640
Eco32I	GATATC	4 cut(s)	670, 717, 730, 838
Eco47I	GGWCC	4 cut(s)	594, 1448, 1505, 1934
Eco53kI	GAGCTC	3 cut(s)	159, 1076, 1638
Eco57I	CTGAAG	2 cut(s)	60, 810
EcoICRI	GAGCTC	3 cut(s)	159, 1076, 1638
EcoO109I	RGGNCCY	4 cut(s)	45, 594, 1448, 1505
EcoRV	GATATC	4 cut(s)	670, 717, 730, 838
EcoT14I	CCWWGG	5 cut(s)	466, 813, 844, 1348, 1912
EcoT22I	ATGCAT	2 cut(s)	133, 877
EcoT38I	GRGCYC	4 cut(s)	161, 1078, 1548, 1640
ErhI	CCWWGG	5 cut(s)	466, 813, 844, 1348, 1912
Esp3I	CGTCTC	1 cut(s)	772
FaeI	CATG	9 cut(s)	99, 131, 182, 1310, 1667, 1744, 1765, 1795, 1804
FalI	AAGNNNNNCTT	4 cut(s)	450, 482, 837, 869
FaqI	GGGAC	4 cut(s)	1219, 1434, 1593, 1620
FatI	CATG	9 cut(s)	95, 127, 178, 1306, 1663, 1740, 1761, 1791, 1800
FauI	CCCGC	3 cut(s)	541, 1977, 2048
FauNDI	CATATG	1 cut(s)	1459
FbaI	TGATCA	1 cut(s)	2082
FblI	GTMKAC	1 cut(s)	1263
Fnu4HI	GCNGC	7 cut(s)	380, 993, 1063, 1094, 1407, 1774, 1941
FokI	GGATG	7 cut(s)	89, 555, 570, 884, 1569, 1720, 2078
FriOI	GRGCYC	4 cut(s)	161, 1078, 1548, 1640
Fsp4HI	GCNGC	7 cut(s)	380, 993, 1063, 1094, 1407, 1774, 1941
FspBI	CTAG	7 cut(s)	75, 144, 245, 384, 1440, 1626, 1869
GluI	GCNGC	7 cut(s)	380, 993, 1063, 1094, 1407, 1774, 1941
GsaI	CCCAGC	2 cut(s)	1038, 1062
GsuI	CTGGAG	3 cut(s)	413, 582, 1158
HaeIII	GGCC	2 cut(s)	47, 1564
HapII	CCGG	1 cut(s)	1630
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	9 cut(s)	99, 131, 182, 1310, 1667, 1744, 1765, 1795, 1804
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	1049
HpaII	CCGG	1 cut(s)	1630
HphI	GGTGA	3 cut(s)	1146, 1475, 1716
Hpy166II	GTNNAC	6 cut(s)	256, 1154, 1264, 1601, 1652, 1909
Hpy188III	TCNNGA	6 cut(s)	323, 392, 1106, 1421, 1694, 1741
Hpy8I	GTNNAC	6 cut(s)	256, 1154, 1264, 1601, 1652, 1909
HpyAV	CCTTC	8 cut(s)	35, 116, 182, 597, 834, 905, 1347, 1747
HpyCH4III	ACNGT	2 cut(s)	556, 2066
HpyCH4IV	ACGT	2 cut(s)	984, 1042
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 429, 746, 755, 1001, 1010, 1635
HpyF3I	CTNAG	8 cut(s)	117, 371, 488, 1100, 1253, 1422, 1509, 1646
HpySE526I	ACGT	2 cut(s)	984, 1042
Hsp92II	CATG	9 cut(s)	99, 131, 182, 1310, 1667, 1744, 1765, 1795, 1804
KpnI	GGTACC	1 cut(s)	1182
KroI	GCCGGC	1 cut(s)	1629
KroNI	GCCGGC	1 cut(s)	1631
Ksp22I	TGATCA	1 cut(s)	2082
KspI	CCGCGG	1 cut(s)	2056
Kzo9I	GATC	8 cut(s)	367, 412, 644, 734, 933, 1670, 1966, 2082
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	8 cut(s)	205, 545, 580, 1023, 1073, 1391, 1403, 1681
Lsp1109I	GCAGC	5 cut(s)	366, 979, 1105, 1418, 1952
LweI	GCATC	6 cut(s)	111, 140, 592, 862, 884, 1080
MaeI	CTAG	7 cut(s)	75, 144, 245, 384, 1440, 1626, 1869
MaeII	ACGT	2 cut(s)	984, 1042
MalI	GATC	8 cut(s)	369, 414, 646, 736, 935, 1672, 1968, 2084
MbiI	CCGCTC	1 cut(s)	548
MboI	GATC	8 cut(s)	367, 412, 644, 734, 933, 1670, 1966, 2082
MflI	RGATCY	3 cut(s)	644, 933, 1670
MhlI	GDGCHC	6 cut(s)	161, 1015, 1078, 1189, 1548, 1640
MlsI	TGGCCA	1 cut(s)	1564
MluNI	TGGCCA	1 cut(s)	1564
MlyI	GAGTC	4 cut(s)	1264, 1378, 1475, 1987
MmeI	TCCRAC	2 cut(s)	1162, 1325
MnlI	CCTC	8 cut(s)	112, 388, 622, 991, 1182, 1518, 1655, 1701
Mox20I	TGGCCA	1 cut(s)	1564
Mph1103I	ATGCAT	2 cut(s)	133, 877
MroNI	GCCGGC	1 cut(s)	1629
MscI	TGGCCA	1 cut(s)	1564
MseI	TTAA	9 cut(s)	24, 51, 249, 273, 353, 1007, 1433, 1769, 2078
MslI	CAYNNNNRTG	2 cut(s)	573, 749
Msp20I	TGGCCA	1 cut(s)	1564
MspA1I	CMGCKG	1 cut(s)	2055
MspI	CCGG	1 cut(s)	1630
Mva1269I	GAATGC	2 cut(s)	295, 1828
MvnI	CGCG	1 cut(s)	2055
MwoI	GCNNNNNNNGC	7 cut(s)	128, 429, 746, 755, 1001, 1010, 1635
NaeI	GCCGGC	1 cut(s)	1631
NdeI	CATATG	1 cut(s)	1459
NdeII	GATC	8 cut(s)	367, 412, 644, 734, 933, 1670, 1966, 2082
NgoMIV	GCCGGC	1 cut(s)	1629
NlaIII	CATG	9 cut(s)	99, 131, 182, 1310, 1667, 1744, 1765, 1795, 1804
NlaIV	GGNNCC	3 cut(s)	46, 1180, 1450
NsiI	ATGCAT	2 cut(s)	133, 877
PagI	TCATGA	1 cut(s)	1740
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	1135
PctI	GAATGC	2 cut(s)	295, 1828
PdiI	GCCGGC	1 cut(s)	1631
PfeI	GAWTC	7 cut(s)	55, 200, 296, 632, 1721, 1744, 2002
PflMI	CCANNNNNTGG	2 cut(s)	1666, 1754
PfoI	TCCNGGA	1 cut(s)	1840
PkrI	GCNGC	7 cut(s)	381, 994, 1064, 1095, 1408, 1775, 1942
PleI	GAGTC	4 cut(s)	1263, 1377, 1474, 1986
PpsI	GAGTC	4 cut(s)	1263, 1377, 1474, 1986
PpuMI	RGGWCCY	3 cut(s)	594, 1448, 1505
Psp124BI	GAGCTC	3 cut(s)	161, 1078, 1640
Psp5II	RGGWCCY	3 cut(s)	594, 1448, 1505
PspFI	CCCAGC	2 cut(s)	1034, 1058
PspN4I	GGNNCC	3 cut(s)	46, 1180, 1450
PspPI	GGNCC	5 cut(s)	45, 594, 1448, 1505, 1934
PspPPI	RGGWCCY	3 cut(s)	594, 1448, 1505
PsrI	GAACNNNNNNTAC	2 cut(s)	667, 699
PstI	CTGCAG	2 cut(s)	997, 1942
PsuI	RGATCY	3 cut(s)	644, 933, 1670
RsaI	GTAC	3 cut(s)	112, 1180, 1910
RsaNI	GTAC	3 cut(s)	111, 1179, 1909
RseI	CAYNNNNRTG	2 cut(s)	573, 749
SacI	GAGCTC	3 cut(s)	161, 1078, 1640
SacII	CCGCGG	1 cut(s)	2056
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	9 cut(s)	24, 51, 249, 273, 353, 1007, 1433, 1769, 2078
SatI	GCNGC	7 cut(s)	380, 993, 1063, 1094, 1407, 1774, 1941
Sau3AI	GATC	8 cut(s)	367, 412, 644, 734, 933, 1670, 1966, 2082
Sau96I	GGNCC	5 cut(s)	45, 594, 1448, 1505, 1934
SchI	GAGTC	4 cut(s)	1264, 1378, 1475, 1987
SduI	GDGCHC	6 cut(s)	161, 1015, 1078, 1189, 1548, 1640
SfaNI	GCATC	6 cut(s)	111, 140, 592, 862, 884, 1080
SfcI	CTRYAG	3 cut(s)	993, 1260, 1938
Sfr303I	CCGCGG	1 cut(s)	2056
SgrBI	CCGCGG	1 cut(s)	2056
SinI	GGWCC	4 cut(s)	594, 1448, 1505, 1934
SmiMI	CAYNNNNRTG	2 cut(s)	573, 749
SmlI	CTYRAG	2 cut(s)	284, 775
SmoI	CTYRAG	2 cut(s)	284, 775
SpeI	ACTAGT	1 cut(s)	1439
SsiI	CCGC	7 cut(s)	432, 548, 1063, 1774, 1984, 2053, 2055
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	7 cut(s)	75, 144, 245, 384, 1440, 1626, 1869
SstI	GAGCTC	3 cut(s)	161, 1078, 1640
StyI	CCWWGG	5 cut(s)	466, 813, 844, 1348, 1912
TaaI	ACNGT	2 cut(s)	556, 2066
TaiI	ACGT	2 cut(s)	987, 1045
TaqI	TCGA	3 cut(s)	155, 898, 1078
TaqII	GACCGA	1 cut(s)	52
TauI	GCSGC	2 cut(s)	1065, 1776
TfiI	GAWTC	7 cut(s)	55, 200, 296, 632, 1721, 1744, 2002
Tru1I	TTAA	9 cut(s)	24, 51, 249, 273, 353, 1007, 1433, 1769, 2078
Tru9I	TTAA	9 cut(s)	24, 51, 249, 273, 353, 1007, 1433, 1769, 2078
TscAI	CASTG	5 cut(s)	430, 751, 885, 1936, 1957
TseI	GCWGC	5 cut(s)	379, 992, 1093, 1406, 1940
TspGWI	ACGGA	2 cut(s)	1378, 1575
TspRI	CASTG	5 cut(s)	430, 751, 885, 1936, 1957
Van91I	CCANNNNNTGG	2 cut(s)	1666, 1754
VpaK11BI	GGWCC	4 cut(s)	594, 1448, 1505, 1934
XapI	RAATTY	6 cut(s)	190, 301, 965, 1471, 1477, 2046
XmiI	GTMKAC	1 cut(s)	1263
XspI	CTAG	7 cut(s)	75, 144, 245, 384, 1440, 1626, 1869
Zsp2I	ATGCAT	2 cut(s)	133, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.