Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Reverse (-)

7333106 .. 7335161

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12351.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTTCAAGGTTGGCTTCAAGGGCGGCTTCATATCTCAGAATCCAAGTGACCCACAGAGGGTTTGCTTCTGTTGTGAAGGATCTCAACTATGCTAATTCTCACGAGTGGGTGAAGGTTGATGGAAAGTCTGCAACTATTGGCATAACTGATCATGCTCAAGATCATTTAGGTGATGTTGTGTATGTTGAGTTGCCAGAGGTCGGGGTTGCTGTGAAGCAGGGTGAAGGTTTTGGAGCAGTTGAAAGTGTCAAGGCAACCAGTGATGTCTACTCTCCTGTGTCGGGAAAAGTGGTTGAAGTCAATGAAGAGCTTAACAGCTCCCCTGGTTTGGTTAACTCGAGCCCATATGAGAAGGGATGGATAATTAAAGTCGAGATAAATGATAGTGGAGAACTGAAGAATTTGATGGATTCTGACAAGTACACCAAGTTTTGTGAAGAAGAAGATGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

153

Amino Acids

16.54

Weight (kDa)

4.96

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCV_H	PF01597	29 - 148	1.3e-49	Glycine cleavage H-protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	4 cut(s)	60, 203, 284, 331
AgsI	TTSAA	4 cut(s)	9, 21, 245, 299
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	2 cut(s)	313, 321
AluI	AGCT	2 cut(s)	313, 321
AlwI	GGATC	1 cut(s)	90
Ama87I	CYCGRG	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	124, 185, 236
AvaI	CYCGRG	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	347
BauI	CACGAG	1 cut(s)	104
BccI	CCATC	3 cut(s)	116, 354, 403
BciT130I	CCWGG	1 cut(s)	327
BclI	TGATCA	1 cut(s)	151
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	439
BpuEI	CTTGAG	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 203, 284, 331
Bse1I	ACTGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	4 cut(s)	60, 203, 284, 331
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	340
BslI	CCNNNNNNNGG	4 cut(s)	60, 203, 284, 331
BsoBI	CYCGRG	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	3 cut(s)	82, 151, 163
BspACI	CCGC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	51
BspPI	GGATC	1 cut(s)	90
BspQI	GCTCTTC	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	3 cut(s)	82, 151, 163
BssSI	CACGAG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	365
BstKTI	GATC	3 cut(s)	85, 154, 166
BstMBI	GATC	3 cut(s)	82, 151, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	6 cut(s)	5, 17, 29, 313, 321, 345
CviKI_1	RGCY	6 cut(s)	5, 17, 29, 313, 321, 345
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	3 cut(s)	84, 153, 165
DpnII	GATC	3 cut(s)	82, 151, 163
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	347
FaeI	CATG	1 cut(s)	158
FaiI	YATR	7 cut(s)	34, 93, 146, 156, 186, 349, 351
FalI	AAGNNNNNCTT	3 cut(s)	33, 13, 45
FatI	CATG	1 cut(s)	154
FauNDI	CATATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	372
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	42, 413
HpaI	GTTAAC	1 cut(s)	337
HphI	GGTGA	3 cut(s)	124, 185, 236
Hpy166II	GTNNAC	3 cut(s)	271, 337, 426
Hpy188I	TCNGA	2 cut(s)	41, 418
Hpy188III	TCNNGA	4 cut(s)	104, 161, 285, 376
Hpy8I	GTNNAC	3 cut(s)	271, 337, 426
HpyAV	CCTTC	4 cut(s)	73, 109, 221, 349
HpyCH4V	TGCA	2 cut(s)	134, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	151
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	82, 151, 163
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	2 cut(s)	236, 326
LpnPI	CCDG	6 cut(s)	206, 210, 274, 291, 312, 339
LweI	GCATC	1 cut(s)	439
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	84, 153, 165
MboI	GATC	3 cut(s)	82, 151, 163
MboII	GAAGA	5 cut(s)	320, 412, 452, 455, 458
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	3 cut(s)	97, 366, 403
MnlI	CCTC	2 cut(s)	53, 193
MseI	TTAA	3 cut(s)	315, 336, 369
MslI	CAYNNNNRTG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	82, 151, 163
NlaIII	CATG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	42, 413
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspXI	VCTCGAGB	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	315, 336, 369
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	3 cut(s)	82, 151, 163
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	7 cut(s)	14, 120, 175, 204, 232, 315, 323
SfaNI	GCATC	1 cut(s)	439
Sfr274I	CTCGAG	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	159, 340
SmoI	CTYRAG	2 cut(s)	159, 340
Sse9I	AATT	3 cut(s)	97, 366, 403
SsiI	CCGC	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	325
TaqI	TCGA	2 cut(s)	341, 375
TasI	AATT	3 cut(s)	97, 366, 403
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	42, 413
Tru1I	TTAA	3 cut(s)	315, 336, 369
Tru9I	TTAA	3 cut(s)	315, 336, 369
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	21, 321
TspRI	CASTG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.