Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Reverse (-)

32819364 .. 32821789

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1231600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTTCAAGGTTGCTGTGGGCATCAAGGGCTGCTTCCTACCTCAGAATCCAAACCGGCCACAGAGGGTTTGCTTCTGTTGTGAAGGATCTCAAGTATGCCGATTCTCATGAGTGGGTTAAGGTTGATGGAAACTCTGCAACTGTTGGAATAACCGATCATGCTCAAGATCATTTAGGTGATGTTGTGTATGTTGAGTTGCCAGAAGTGGGGGCTTCTGTGAAGCAGGGCGAAGGCTTTGGAGCAGTCGAAAGTGTCAAAGCAACTAGTGATGTTTACTCTCCTGTGTCAGGGAAAGTGGTTGAAGTCAATGAAGAGCTTAGCAACTCACCTGGTTTGATCAACGCAAGCCCATATGAGGAAGGATGGATAATGAAAGTTGAGATCAGCGATAGTGGTGAACTGAATAAGTTGTTGGACTCAGAAAAGTACACCAAGTTTTGTGAAGAAGAAGATGCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

155

Amino Acids

16.76

Weight (kDa)

4.73

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCV_H	PF01597	31 - 150	3.7e-50	Glycine cleavage H-protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	58
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	3 cut(s)	209, 290, 358
AgsI	TTSAA	2 cut(s)	9, 305
AhlI	ACTAGT	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	331
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	32
AsuHPI	GGTGA	3 cut(s)	191, 321, 410
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	122, 360
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	339
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	1 cut(s)	267
BisI	GCNGC	1 cut(s)	33
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	32, 445
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	77, 150
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 290, 358
Bse118I	RCCGGY	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	371
BseLI	CCNNNNNNNGG	3 cut(s)	209, 290, 358
BseMII	CTCAG	2 cut(s)	58, 435
BseXI	GCAGC	1 cut(s)	19
BshFI	GGCC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	209, 290, 358
BsnI	GGCC	1 cut(s)	60
Bsp143I	GATC	5 cut(s)	88, 157, 169, 339, 384
Bsp1720I	GCTNAGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	57, 434
BspHI	TCATGA	1 cut(s)	109
BspPI	GGATC	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssMI	GATC	5 cut(s)	88, 157, 169, 339, 384
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	3 cut(s)	44, 320, 421
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	371
BstKTI	GATC	5 cut(s)	91, 160, 172, 342, 387
BstMBI	GATC	5 cut(s)	88, 157, 169, 339, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	371
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	349
CciI	TCATGA	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	56
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	2 cut(s)	110, 161
CviJI	RGCY	7 cut(s)	5, 32, 60, 215, 237, 319, 351
CviKI_1	RGCY	7 cut(s)	5, 32, 60, 215, 237, 319, 351
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	3 cut(s)	44, 320, 421
DpnI	GATC	5 cut(s)	90, 159, 171, 341, 386
DpnII	GATC	5 cut(s)	88, 157, 169, 339, 384
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	113, 164
FaiI	YATR	6 cut(s)	99, 111, 162, 192, 355, 357
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FatI	CATG	2 cut(s)	109, 160
FauNDI	CATATG	1 cut(s)	355
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	2 cut(s)	113, 164
HinfI	GANTC	3 cut(s)	48, 104, 419
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	3 cut(s)	191, 321, 410
Hpy166II	GTNNAC	3 cut(s)	277, 401, 432
Hpy188I	TCNGA	2 cut(s)	47, 424
Hpy188III	TCNNGA	2 cut(s)	110, 167
Hpy8I	GTNNAC	3 cut(s)	277, 401, 432
HpyAV	CCTTC	3 cut(s)	79, 227, 356
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	140, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	3 cut(s)	44, 320, 421
Hsp92II	CATG	2 cut(s)	113, 164
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	5 cut(s)	88, 157, 169, 339, 384
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	7 cut(s)	70, 212, 216, 276, 297, 318, 345
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	2 cut(s)	32, 445
MabI	ACCWGGT	1 cut(s)	331
MaeI	CTAG	1 cut(s)	267
MalI	GATC	5 cut(s)	90, 159, 171, 341, 386
MboI	GATC	5 cut(s)	88, 157, 169, 339, 384
MboII	GAAGA	4 cut(s)	326, 458, 461, 464
MflI	RGATCY	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	2 cut(s)	127, 396
MnlI	CCTC	3 cut(s)	53, 59, 352
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	5 cut(s)	88, 157, 169, 339, 384
NlaIII	CATG	2 cut(s)	113, 164
PagI	TCATGA	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	48, 104
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	5 cut(s)	88, 157, 169, 339, 384
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	6 cut(s)	14, 45, 126, 181, 321, 334
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	32, 445
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	92, 165
SmoI	CTYRAG	2 cut(s)	92, 165
SpeI	ACTAGT	1 cut(s)	266
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	249
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	2 cut(s)	48, 104
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	327, 389
XagI	CCTNNNNNAGG	1 cut(s)	288
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.