pycom05g22890

The H protein shuttles the methylamine group of glycine from the P protein to the T protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0005002
Physical Location & Seq
Reverse (-)
25029345 .. 25031429
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g22890.1

Sequence Viewer

Length: 567 bp
ATGAAATCGCACACCCACCAACCCCACTATATAAAAAAAGGAGTGAAGTTTTTATATTTAAGGAGAGACAGCGTAGTGTTTGTCTTGTGTTGGATTTCACAAATGGCTTCAAGGTTGGTGTGGGCTTCAAGGGCGGCTTCCTACCTCAGAATCCAAACCACCTTCAGAGGATTTGCTTCTGTTGTGAAGGATCTCAAGTATGCCGATTCTCATGAGTGGGTGAAAGTTGATGGAAACTCCGCAACCGTTGGAATAACTGATCATGCGCAAGATCACTTAGGTGATGTTGTGTATATTGAGTTGCCAGAAGTGGGGGCTGCTGTGAAGCTGGGCGAAGGCTTTGGAGCAGTCGAAAGTGTCAAGGCAACCAGTGATGTTTACTCTCCTGTGTCGGGAAAAGTGACTGAAGTCAATGAAGAGCTTAGCAACTCCCCTGGTTTGGTCAACTCAAGCCCGTATGGGGATGGGTGGATAATGAAAGTCGAGATAAGTGATAGTGGTGAACTGAATAAATTGTTGGACGCAGAAAAGTACACCGAGTTTTGTGAAGAAGAAGATGCACATTGA

Protein Analysis

189

Amino Acids

20.82

Weight (kDa)

5.34

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCV_H PF01597 65 - 184 4.1e-49 Glycine cleavage H-protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 267
AciI CCGC 2 cut(s) 134, 240
AclWI GGATC 1 cut(s) 198
AcuI CTGAAG 2 cut(s) 148, 426
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 4 cut(s) 311, 392, 439, 460
AgsI TTSAA 2 cut(s) 111, 129
AjnI CCWGG 1 cut(s) 433
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AleI CACNNNNGTG 1 cut(s) 279
AluBI AGCT 2 cut(s) 328, 421
AluI AGCT 2 cut(s) 328, 421
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 232, 293, 512
BbvI GCAGC 1 cut(s) 304
BccI CCATC 2 cut(s) 224, 458
BciT130I CCWGG 1 cut(s) 435
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 60
BisI GCNGC 2 cut(s) 135, 318
BlpI GCTNAGC 1 cut(s) 422
BlsI GCNGC 2 cut(s) 136, 319
Bme1390I CCNGG 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 547
BoxI GACNNNNGTC 1 cut(s) 407
Bpu1102I GCTNAGC 1 cut(s) 422
BpuEI CTTGAG 2 cut(s) 179, 433
BsaJI CCNNGG 1 cut(s) 433
Bsc4I CCNNNNNNNGG 4 cut(s) 311, 392, 439, 460
Bse1I ACTGG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 4 cut(s) 311, 392, 439, 460
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 328
BslI CCNNNNNNNGG 4 cut(s) 311, 392, 439, 460
BsmAI GTCTC 1 cut(s) 60
Bsp143I GATC 3 cut(s) 190, 259, 271
Bsp1720I GCTNAGC 1 cut(s) 422
BspACI CCGC 2 cut(s) 134, 240
BspCNI CTCAG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 211
BspPI GGATC 1 cut(s) 198
BspQI GCTCTTC 1 cut(s) 411
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 3 cut(s) 190, 259, 271
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 146, 277, 422
BstF5I GGATG 1 cut(s) 469
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 3 cut(s) 193, 262, 274
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 3 cut(s) 190, 259, 271
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 435
BstPAI GACNNNNGTC 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 376
CciI TCATGA 1 cut(s) 211
CfoI GCGC 1 cut(s) 268
CseI GACGC 1 cut(s) 530
Csp6I GTAC 1 cut(s) 532
CviAII CATG 2 cut(s) 212, 263
CviJI RGCY 8 cut(s) 107, 125, 137, 317, 328, 339, 421, 453
CviKI_1 RGCY 8 cut(s) 107, 125, 137, 317, 328, 339, 421, 453
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 3 cut(s) 146, 277, 422
DpnI GATC 3 cut(s) 192, 261, 273
DpnII GATC 3 cut(s) 190, 259, 271
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco57I CTGAAG 2 cut(s) 148, 426
EcoRII CCWGG 1 cut(s) 433
FaeI CATG 2 cut(s) 215, 266
FaiI YATR 8 cut(s) 30, 32, 55, 201, 213, 264, 294, 459
FalI AAGNNNNNCTT 2 cut(s) 121, 153
FatI CATG 2 cut(s) 211, 262
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 135, 318
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 2 cut(s) 135, 318
FspI TGCGCA 1 cut(s) 267
GlaI GCGC 1 cut(s) 267
GluI GCNGC 2 cut(s) 135, 318
GsaI CCCAGC 1 cut(s) 332
HgaI GACGC 1 cut(s) 530
HhaI GCGC 1 cut(s) 268
Hin1II CATG 2 cut(s) 215, 266
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 2 cut(s) 150, 206
HphI GGTGA 3 cut(s) 232, 293, 512
Hpy166II GTNNAC 4 cut(s) 379, 445, 503, 534
Hpy188I TCNGA 2 cut(s) 149, 167
Hpy188III TCNNGA 3 cut(s) 212, 393, 484
Hpy8I GTNNAC 4 cut(s) 379, 445, 503, 534
HpyAV CCTTC 3 cut(s) 172, 181, 329
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 1 cut(s) 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 3 cut(s) 146, 277, 422
Hsp92II CATG 2 cut(s) 215, 266
HspAI GCGC 1 cut(s) 266
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 3 cut(s) 190, 259, 271
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 6 cut(s) 314, 318, 382, 399, 420, 447
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 547
MaeIII GTNAC 1 cut(s) 400
MalI GATC 3 cut(s) 192, 261, 273
MboI GATC 3 cut(s) 190, 259, 271
MboII GAAGA 4 cut(s) 428, 560, 563, 566
MflI RGATCY 1 cut(s) 190
MluCI AATT 1 cut(s) 512
MmeI TCCRAC 3 cut(s) 71, 229, 498
MnlI CCTC 2 cut(s) 155, 161
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 3 cut(s) 190, 259, 271
NlaIII CATG 2 cut(s) 215, 266
NmuCI GTSAC 1 cut(s) 400
NsbI TGCGCA 1 cut(s) 267
OliI CACNNNNGTG 1 cut(s) 279
PagI TCATGA 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 150, 206
PkrI GCNGC 2 cut(s) 136, 319
PshAI GACNNNNGTC 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
RseI CAYNNNNRTG 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 2 cut(s) 135, 318
Sau3AI GATC 3 cut(s) 190, 259, 271
ScrFI CCNGG 1 cut(s) 435
SetI ASST 6 cut(s) 116, 147, 164, 283, 330, 423
SfaNI GCATC 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 194, 448
SmoI CTYRAG 2 cut(s) 194, 448
Sse9I AATT 1 cut(s) 512
SsiI CCGC 2 cut(s) 134, 240
StyD4I CCNGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 2 cut(s) 351, 483
TasI AATT 1 cut(s) 512
TatI WGTACW 1 cut(s) 531
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 2 cut(s) 150, 206
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 3 cut(s) 17, 429, 491
TspRI CASTG 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.