Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Forward (+)

67894378 .. 67895059

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020714

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGATTAACGAAAGCAGTGAAAACCTTCTAGTTGTGAAGAGTTTAAAGTATGCCAAGTCGCATGAGTGGGCGAGAGTTGATGGGAAGTTGGCTACAATAGGGTTAAGTGACCCTGCTCAGAAGCACTTGGGTGGTATTATTATCCATGTTGAACTGCCTGATGTCGGTCAAGGTGTAGCACAAGGCACCAGATGTGGTACTGTTGAGCCTGTCAAAGCCAGCAAGGGCCTCCACTCTCCTCTCTCTGGCAATGTAGTTGAAGTAAATCAAAAGCTTCGTACCTCTCCTGCTTTGGTAAGCACAATTGCTCGGAAGTACTGTTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

110

Amino Acids

11.68

Weight (kDa)

9.26

Isoelectric Point (pI)

24.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCV_H	PF01597	15 - 100	6.2e-23	Glycine cleavage H-protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AfaI	GTAC	3 cut(s)	199, 280, 317
AfiI	CCNNNNNNNGG	2 cut(s)	164, 245
AgsI	TTSAA	2 cut(s)	152, 260
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
AoxI	GGCC	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	185
BccI	CCATC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	29
BmcAI	AGTACT	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 245
Bse3DI	GCAATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	164, 245
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	164, 245
BsnI	GGCC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	202, 320
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	198, 279, 316
CviAII	CATG	3 cut(s)	62, 146, 325
CviJI	RGCY	5 cut(s)	92, 208, 218, 228, 274
CviKI_1	RGCY	5 cut(s)	92, 208, 218, 228, 274
CviQI	GTAC	3 cut(s)	198, 279, 316
DdeI	CTNAG	1 cut(s)	117
DraI	TTTAAA	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	226
FaeI	CATG	3 cut(s)	65, 149, 328
FaiI	YATR	4 cut(s)	51, 63, 147, 326
FatI	CATG	3 cut(s)	61, 145, 324
FspBI	CTAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	65, 149, 328
HindIII	AAGCTT	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	120, 312
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	202, 320
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	65, 149, 328
LpnPI	CCDG	7 cut(s)	126, 171, 202, 222, 231, 232, 300
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	107
MboII	GAAGA	1 cut(s)	49
MfeI	CAATTG	1 cut(s)	303
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	3 cut(s)	239, 249, 292
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	3 cut(s)	6, 44, 104
MslI	CAYNNNNRTG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	303
NlaIII	CATG	3 cut(s)	65, 149, 328
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	107
OliI	CACNNNNGTG	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	226
RsaI	GTAC	3 cut(s)	199, 280, 317
RsaNI	GTAC	3 cut(s)	198, 279, 316
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	6, 44, 104
Sau96I	GGNCC	1 cut(s)	226
ScaI	AGTACT	1 cut(s)	317
SetI	ASST	4 cut(s)	27, 175, 276, 284
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	1 cut(s)	303
SspMI	CTAG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	202, 320
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	1 cut(s)	303
TatI	WGTACW	1 cut(s)	315
Tru1I	TTAA	3 cut(s)	6, 44, 104
Tru9I	TTAA	3 cut(s)	6, 44, 104
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.