Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Forward (+)

16235058 .. 16236191

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00094870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTTTTGCGCGACGAGGGCTTCTCTGATGCAGCATAAGGCACCAGATGTGGTGAACGGGAGCCCGTATGAAGATGGATGGATCATGAAGGTAGAAATGAGCAACAAAGAGGAGCTGAATAATCTGATGGACTATGATGAGTACGCGAGCTATGTGAAAACCAAGCTGCCAAACATTGATGAACCAGTTGAAAACACTTGGAATATGATGTATCAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

73

Amino Acids

8.58

Weight (kDa)

4.61

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCV_H	PF01597	13 - 54	2e-11	Glycine cleavage H-protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccII	CGCG	2 cut(s)	11, 146
AclWI	GGATC	1 cut(s)	89
AfaI	GTAC	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	3 cut(s)	115, 150, 166
AluI	AGCT	3 cut(s)	115, 150, 166
AlwI	GGATC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	31, 166
AspLEI	GCGC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	43, 153
BccI	CCATC	3 cut(s)	68, 72, 121
BisI	GCNGC	2 cut(s)	32, 167
BlsI	GCNGC	2 cut(s)	33, 168
BmiI	GGNNCC	2 cut(s)	42, 62
BmsI	GCATC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
Bse1I	ACTGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	185
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	43, 153
Bsh1236I	CGCG	2 cut(s)	11, 146
BshNI	GGYRCC	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	81
BspFNI	CGCG	2 cut(s)	11, 146
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	42, 62
BspPI	GGATC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	2 cut(s)	11, 146
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstUI	CGCG	2 cut(s)	11, 146
BstV1I	GCAGC	2 cut(s)	43, 153
BtsCI	GGATG	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	148
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	5 cut(s)	20, 63, 115, 150, 166
CviKI_1	RGCY	5 cut(s)	20, 63, 115, 150, 166
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	1 cut(s)	88
FaiI	YATR	6 cut(s)	36, 69, 86, 135, 153, 206
FatI	CATG	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	32, 167
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	2 cut(s)	32, 167
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	32, 167
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	27, 126, 216
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	2 cut(s)	60, 112
LpnPI	CCDG	2 cut(s)	57, 198
Lsp1109I	GCAGC	2 cut(s)	43, 153
LweI	GCATC	1 cut(s)	18
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	9, 103
MvnI	CGCG	2 cut(s)	11, 146
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	42, 62
PagI	TCATGA	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	33, 168
PspN4I	GGNNCC	2 cut(s)	42, 62
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SatI	GCNGC	2 cut(s)	32, 167
Sau3AI	GATC	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	4 cut(s)	93, 117, 152, 168
SfaNI	GCATC	1 cut(s)	18
TseI	GCWGC	2 cut(s)	31, 166
TspDTI	ATGAA	3 cut(s)	84, 101, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.