Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Reverse (-)

20081207 .. 20082435

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G186700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCATTGACTAGGGTTTGGTCAACAAGTGCTGCTTTGTCTTTGAGGGTGTCTGTTCCCTGTAGAGGCTTTTCTTCTGCTGTGGAGGGTTTGAAGTTTGCAAAGTCCCATGAGTGGGCTAAGGTTGAAGATGAAGGGAAATTGGCTAGTGTGGGAATAACAGAACATGCTCAGGAACATTTGGGTGATGTTATATATGTGGAGCTGCCTGATGTTGGTGTTGCTGTTGCACAAGGCACCATTGTTGGGAGTGTTGAGAGTGTCAAGGCCTCCTCAGACATTAACTCTCCTGTCTCTGGCAACATAGTTGAAGTGAACAAAGAGCTTCTTAGCTCTCCTGGTTTGGTCAATGGGAGCCCGTATGAAAAAGGATGGATCATGAAGGTGGAGATGAGCAGTAGGGATGAGCTCAATAATCTGATGGATCCTGATGAGTACTCTGAGTATGTGAAGAAGAAGATCCCAAACATTACAGAACATAAAGACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

164

Amino Acids

17.64

Weight (kDa)

5.0

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AclWI	GGATC	4 cut(s)	383, 419, 432, 454
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	6 cut(s)	65, 114, 115, 215, 246, 296
AgsI	TTSAA	3 cut(s)	94, 128, 311
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	4 cut(s)	205, 325, 333, 409
AluI	AGCT	4 cut(s)	205, 325, 333, 409
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	4 cut(s)	383, 419, 432, 454
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	32, 205
AsuHPI	GGTGA	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	2 cut(s)	359, 411
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	19, 192
BccI	CCATC	2 cut(s)	366, 415
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	2 cut(s)	12, 147
BfmI	CTRYAG	1 cut(s)	61
BisI	GCNGC	2 cut(s)	33, 206
BlsI	GCNGC	2 cut(s)	34, 207
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	3 cut(s)	238, 356, 426
BmrFI	CCNGG	1 cut(s)	339
Bpu10I	CCTNAGC	2 cut(s)	120, 171
Bsc4I	CCNNNNNNNGG	6 cut(s)	65, 114, 115, 215, 246, 296
BseBI	CCWGG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	377, 409
BseLI	CCNNNNNNNGG	6 cut(s)	65, 114, 115, 215, 246, 296
BseMII	CTCAG	3 cut(s)	185, 288, 432
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	19, 192
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	6 cut(s)	65, 114, 115, 215, 246, 296
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	359, 411
Bsp143I	GATC	3 cut(s)	375, 424, 459
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	3 cut(s)	184, 287, 433
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	238, 356, 426
BspPI	GGATC	4 cut(s)	383, 419, 432, 454
BspT107I	GGYRCC	1 cut(s)	236
BssMI	GATC	3 cut(s)	375, 424, 459
Bst2UI	CCWGG	1 cut(s)	339
BstDEI	CTNAG	6 cut(s)	120, 171, 274, 329, 441, 489
BstF5I	GGATG	2 cut(s)	377, 409
BstKTI	GATC	3 cut(s)	378, 427, 462
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	3 cut(s)	375, 424, 459
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	19, 192
BstX2I	RGATCY	2 cut(s)	424, 459
BstYI	RGATCY	2 cut(s)	424, 459
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	377, 409
CciI	TCATGA	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	3 cut(s)	110, 167, 379
CviJI	RGCY	9 cut(s)	69, 119, 146, 205, 269, 325, 333, 357, 409
CviKI_1	RGCY	9 cut(s)	69, 119, 146, 205, 269, 325, 333, 357, 409
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	6 cut(s)	120, 171, 274, 329, 441, 489
DpnI	GATC	3 cut(s)	377, 426, 461
DpnII	GATC	3 cut(s)	375, 424, 459
Ecl136II	GAGCTC	1 cut(s)	409
Eco147I	AGGCCT	1 cut(s)	269
Eco24I	GRGCYC	2 cut(s)	359, 411
Eco53kI	GAGCTC	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	359, 411
FaeI	CATG	3 cut(s)	113, 170, 382
FalI	AAGNNNNNCTT	4 cut(s)	19, 51, 312, 344
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	3 cut(s)	109, 166, 378
Fnu4HI	GCNGC	2 cut(s)	33, 206
FokI	GGATG	2 cut(s)	384, 416
FriOI	GRGCYC	2 cut(s)	359, 411
Fsp4HI	GCNGC	2 cut(s)	33, 206
FspBI	CTAG	2 cut(s)	12, 147
GluI	GCNGC	2 cut(s)	33, 206
HaeIII	GGCC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	113, 170, 382
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	24, 316
Hpy188I	TCNGA	3 cut(s)	277, 420, 442
Hpy188III	TCNNGA	3 cut(s)	173, 379, 428
Hpy8I	GTNNAC	2 cut(s)	24, 316
HpyAV	CCTTC	2 cut(s)	128, 376
HpyCH4V	TGCA	2 cut(s)	101, 230
HpyF3I	CTNAG	6 cut(s)	120, 171, 274, 329, 441, 489
Hsp92II	CATG	3 cut(s)	113, 170, 382
Kzo9I	GATC	3 cut(s)	375, 424, 459
LmnI	GCTCC	2 cut(s)	202, 354
LpnPI	CCDG	8 cut(s)	73, 158, 222, 282, 303, 324, 351, 441
Lsp1109I	GCAGC	2 cut(s)	19, 192
MaeI	CTAG	2 cut(s)	12, 147
MalI	GATC	3 cut(s)	377, 426, 461
MboI	GATC	3 cut(s)	375, 424, 459
MboII	GAAGA	5 cut(s)	66, 140, 463, 466, 469
MflI	RGATCY	2 cut(s)	424, 459
MhlI	GDGCHC	2 cut(s)	359, 411
MluCI	AATT	1 cut(s)	140
MnlI	CCTC	5 cut(s)	39, 59, 79, 280, 283
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	2 cut(s)	183, 383
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
NdeII	GATC	3 cut(s)	375, 424, 459
NlaIII	CATG	3 cut(s)	113, 170, 382
NlaIV	GGNNCC	3 cut(s)	238, 356, 426
NspI	RCATGY	1 cut(s)	170
PagI	TCATGA	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	34, 207
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	3 cut(s)	238, 356, 426
PsuI	RGATCY	2 cut(s)	424, 459
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	2 cut(s)	183, 383
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	33, 206
Sau3AI	GATC	3 cut(s)	375, 424, 459
ScaI	AGTACT	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	359, 411
SetI	ASST	6 cut(s)	126, 207, 327, 335, 387, 411
SfcI	CTRYAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	183, 383
Sse9I	AATT	1 cut(s)	140
SseBI	AGGCCT	1 cut(s)	269
SspMI	CTAG	2 cut(s)	12, 147
SstI	GAGCTC	1 cut(s)	411
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	337
TasI	AATT	1 cut(s)	140
TatI	WGTACW	1 cut(s)	435
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	2 cut(s)	32, 205
TspDTI	ATGAA	3 cut(s)	147, 378, 395
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	2 cut(s)	12, 147
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.