Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Reverse (-)

14601825 .. 14603496

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG158500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTTCAAGGTTGGCTTCAAGGGCTGCTTCATACCTCAGAATCCAAGTGACCCACAGAGGGTTTGCTTCTGTTGTGAAGGATCTCAACTATGCTAATTCTCACGAATGGGTGAAGGTTGATGGAAAGTCTGCAACTGTCGGCATTACTGATCATGCTCAAGATCATTTAGGTGATGTTGTGTATGTTGAGTTGCCAGAGGTTGGGGTTGCTGTGAAGCAGGGTGATGCGTTTGGAGCAGTTGAAAGTGTCAAGGCAACCAGTGATGTTTACTCTCCCGTGTCGGGAAAAGTGGTTGAAGTCAATGAAGAGCTCAGCAGCTCCCCTGGTTTGGTTAACTCAAGCCCGTATGAGAAGGGATGGATAATTAAAGTCGAGATAAATGATAGTGGTGAACTGAAGAACTTGATGGATTCAGACAAGTACACCAATTTTTGTGAAGAAGAAGATGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

152

Amino Acids

16.49

Weight (kDa)

4.84

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCV_H	PF01597	29 - 148	1e-49	Glycine cleavage H-protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	203
AclWI	GGATC	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	4 cut(s)	60, 203, 284, 331
AgsI	TTSAA	4 cut(s)	9, 21, 245, 299
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	2 cut(s)	313, 321
AluI	AGCT	2 cut(s)	313, 321
Alw21I	GWGCWC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	26, 318
AsuHPI	GGTGA	4 cut(s)	124, 185, 236, 404
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	13, 330
BccI	CCATC	3 cut(s)	116, 354, 403
BciT130I	CCWGG	1 cut(s)	327
BclI	TGATCA	1 cut(s)	151
BisI	GCNGC	2 cut(s)	27, 319
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	2 cut(s)	28, 320
Bme1390I	CCNGG	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	217, 439
Bpu1102I	GCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	144, 325
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 203, 284, 331
Bse1I	ACTGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	4 cut(s)	60, 203, 284, 331
BseMII	CTCAG	2 cut(s)	52, 328
BseNI	ACTGG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	13, 330
BsiHKAI	GWGCWC	1 cut(s)	315
BslI	CCNNNNNNNGG	4 cut(s)	60, 203, 284, 331
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	82, 151, 163
Bsp1720I	GCTNAGC	1 cut(s)	314
BspCNI	CTCAG	2 cut(s)	51, 327
BspPI	GGATC	1 cut(s)	90
BspQI	GCTCTTC	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	3 cut(s)	82, 151, 163
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	38, 314
BstF5I	GGATG	1 cut(s)	365
BstKTI	GATC	3 cut(s)	85, 154, 166
BstMBI	GATC	3 cut(s)	82, 151, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 236
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstV1I	GCAGC	2 cut(s)	13, 330
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	6 cut(s)	5, 17, 26, 313, 321, 345
CviKI_1	RGCY	6 cut(s)	5, 17, 26, 313, 321, 345
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	2 cut(s)	38, 314
DpnI	GATC	3 cut(s)	84, 153, 165
DpnII	GATC	3 cut(s)	82, 151, 163
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	1 cut(s)	158
FaiI	YATR	5 cut(s)	34, 93, 156, 186, 351
FalI	AAGNNNNNCTT	3 cut(s)	33, 13, 45
FatI	CATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	27, 319
FokI	GGATG	1 cut(s)	372
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	27, 319
GluI	GCNGC	2 cut(s)	27, 319
Hin1II	CATG	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	42, 413
HpaI	GTTAAC	1 cut(s)	337
HphI	GGTGA	4 cut(s)	124, 185, 236, 404
Hpy166II	GTNNAC	4 cut(s)	271, 337, 395, 426
Hpy188I	TCNGA	2 cut(s)	41, 418
Hpy188III	TCNNGA	4 cut(s)	104, 161, 285, 376
Hpy8I	GTNNAC	4 cut(s)	271, 337, 395, 426
HpyAV	CCTTC	3 cut(s)	73, 109, 349
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	134, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 236
HpyF3I	CTNAG	2 cut(s)	38, 314
Hsp92II	CATG	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	151
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	82, 151, 163
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	2 cut(s)	236, 326
LpnPI	CCDG	5 cut(s)	206, 210, 274, 312, 339
Lsp1109I	GCAGC	2 cut(s)	13, 330
LweI	GCATC	2 cut(s)	217, 439
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	84, 153, 165
MboI	GATC	3 cut(s)	82, 151, 163
MboII	GAAGA	5 cut(s)	320, 412, 452, 455, 458
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	97, 366, 430
MnlI	CCTC	3 cut(s)	47, 53, 193
MseI	TTAA	2 cut(s)	336, 369
MslI	CAYNNNNRTG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	23, 236
NdeII	GATC	3 cut(s)	82, 151, 163
NlaIII	CATG	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	42, 413
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	28, 320
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	336, 369
SatI	GCNGC	2 cut(s)	27, 319
Sau3AI	GATC	3 cut(s)	82, 151, 163
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	7 cut(s)	14, 39, 120, 175, 204, 315, 323
SfaNI	GCATC	2 cut(s)	217, 439
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	159, 340
SmoI	CTYRAG	2 cut(s)	159, 340
Sse9I	AATT	3 cut(s)	97, 366, 430
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	375
TasI	AATT	3 cut(s)	97, 366, 430
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	2 cut(s)	42, 413
Tru1I	TTAA	2 cut(s)	336, 369
Tru9I	TTAA	2 cut(s)	336, 369
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	26, 318
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	21, 321
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.