Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Reverse (-)

75164440 .. 75166039

Gene Structure 1600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG526300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTTTGCGCAACGAGGGCTTCTCTGTATCTGATGAACATGAAAACCTCAGTTCCTTCCTCTAGAGGCTTTTCTTCTGTTGTGAAGAGTTTAAAGTATGACAAGTCGCATGAGTGGGCGAGAGTTGATGGGATGTTGGCTACAATAGGATGTGGTACTGTTGAGTCTGTCAAAGCCAGCAAGGGCCTCCACTCTCCTCTCTCTGGCAATGTAGTTGAAGTAAATCAAAAGCTTCGTACCTCTCCTGCTTTGGTGAATCGAAGCCCGTATGAAGATGGATGGATCATGAAGGTAGAAATGAGCAACAAAGAGGAGCTGAATAATCTGATGGACTATGATGAGTACGCGAGCTATGTGAAAACCAAGTTGCCAAACATTGATGAACCAGTTGAAAACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

133

Amino Acids

14.84

Weight (kDa)

6.73

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCV_H	PF01597	51 - 121	5.5e-24	Glycine cleavage H-protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	10
AccII	CGCG	1 cut(s)	347
AclWI	GGATC	1 cut(s)	290
AfaI	GTAC	3 cut(s)	157, 238, 344
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	218, 392
AluBI	AGCT	3 cut(s)	232, 316, 351
AluI	AGCT	3 cut(s)	232, 316, 351
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	265
BccI	CCATC	4 cut(s)	122, 269, 273, 322
BfaI	CTAG	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	184
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	214
BseGI	GGATG	3 cut(s)	138, 155, 284
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	2 cut(s)	186, 326
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	203
BsnI	GGCC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	347
BspHI	TCATGA	1 cut(s)	285
BspPI	GGATC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	386
BssMI	GATC	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	178, 349
BstDEI	CTNAG	2 cut(s)	49, 399
BstF5I	GGATG	3 cut(s)	138, 155, 284
BstFNI	CGCG	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstUI	CGCG	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	138, 155, 284
Cac8I	GCNNGC	2 cut(s)	178, 349
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	156, 237, 343
CviAII	CATG	3 cut(s)	40, 110, 286
CviJI	RGCY	9 cut(s)	20, 69, 140, 176, 186, 232, 264, 316, 351
CviKI_1	RGCY	9 cut(s)	20, 69, 140, 176, 186, 232, 264, 316, 351
CviQI	GTAC	3 cut(s)	156, 237, 343
DdeI	CTNAG	2 cut(s)	49, 399
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	184
FaeI	CATG	3 cut(s)	43, 113, 289
FaiI	YATR	7 cut(s)	41, 99, 111, 270, 287, 336, 354
FatI	CATG	3 cut(s)	39, 109, 285
FokI	GGATG	3 cut(s)	145, 162, 291
FspBI	CTAG	1 cut(s)	63
FspI	TGCGCA	1 cut(s)	10
GlaI	GCGC	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	43, 113, 289
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	164, 256
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	33, 327
Hpy188III	TCNNGA	2 cut(s)	63, 286
HpyAV	CCTTC	2 cut(s)	66, 283
HpyCH4III	ACNGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	49, 399
Hsp92II	CATG	3 cut(s)	43, 113, 289
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	3 cut(s)	189, 190, 258
MaeI	CTAG	1 cut(s)	63
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	3 cut(s)	66, 97, 284
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	8 cut(s)	9, 58, 59, 70, 197, 207, 250, 304
MseI	TTAA	1 cut(s)	92
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	3 cut(s)	43, 113, 289
NsbI	TGCGCA	1 cut(s)	10
PagI	TCATGA	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	184
RsaI	GTAC	3 cut(s)	157, 238, 344
RsaNI	GTAC	3 cut(s)	156, 237, 343
SaqAI	TTAA	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	173
SetI	ASST	6 cut(s)	50, 234, 242, 294, 318, 353
SspMI	CTAG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TspDTI	ATGAA	5 cut(s)	50, 56, 285, 302, 396
XbaI	TCTAGA	1 cut(s)	62
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.