Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Reverse (-)

72240711 .. 72242277

Gene Structure 1567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG514500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAACATGAAAACCTCAGTTCCTTCCTCTAGAGGCTTTTCTTCTGTTGTGAAGAGTTTAAAGTATGACAAGTCGCATGAGTGGGCGAGATCTGTCAAAGCCAGCAAGGGCCTCCACTCTCCTCTCTCTGGCAATGTAGTTGAAGTAAATCAAAAGCTTCGTACCTCTCCTGCTTTGGTGAATCGAAGCCCGTATGAAGATGGATGGATCATGAAGGTAGAAATGAGCAACAAAGAGGAGCTGAATAATCTGATGGACTATGATGAGTACGCGAGCTATGTGAAAACCAAGTTGCCAAACATTGATGAACCAGTTGAAAACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

108

Amino Acids

12.24

Weight (kDa)

7.92

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCV_H	PF01597	17 - 96	3.5e-23	Glycine cleavage H-protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	272
AclWI	GGATC	1 cut(s)	215
AfaI	GTAC	2 cut(s)	163, 269
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	143, 317
AluBI	AGCT	3 cut(s)	157, 241, 276
AluI	AGCT	3 cut(s)	157, 241, 276
AlwI	GGATC	1 cut(s)	215
AoxI	GGCC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	190
BccI	CCATC	3 cut(s)	194, 198, 247
BfaI	CTAG	1 cut(s)	30
BglII	AGATCT	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	2 cut(s)	111, 251
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	128
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	89, 207
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	272
BspHI	TCATGA	1 cut(s)	210
BspPI	GGATC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	311
BssMI	GATC	2 cut(s)	89, 207
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	2 cut(s)	103, 274
BstDEI	CTNAG	2 cut(s)	16, 324
BstF5I	GGATG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	2 cut(s)	92, 210
BstMBI	GATC	2 cut(s)	89, 207
BstUI	CGCG	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	103, 274
CciI	TCATGA	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	162, 268
CviAII	CATG	3 cut(s)	7, 77, 211
CviJI	RGCY	7 cut(s)	36, 101, 111, 157, 189, 241, 276
CviKI_1	RGCY	7 cut(s)	36, 101, 111, 157, 189, 241, 276
CviQI	GTAC	2 cut(s)	162, 268
DdeI	CTNAG	2 cut(s)	16, 324
DpnI	GATC	2 cut(s)	91, 209
DpnII	GATC	2 cut(s)	89, 207
DraI	TTTAAA	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	109
FaeI	CATG	3 cut(s)	10, 80, 214
FaiI	YATR	7 cut(s)	8, 66, 78, 195, 212, 261, 279
FatI	CATG	3 cut(s)	6, 76, 210
FokI	GGATG	1 cut(s)	216
FspBI	CTAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	10, 80, 214
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	181
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	2 cut(s)	30, 211
HpyAV	CCTTC	2 cut(s)	33, 208
HpyF3I	CTNAG	2 cut(s)	16, 324
Hsp92II	CATG	3 cut(s)	10, 80, 214
Kzo9I	GATC	2 cut(s)	89, 207
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	3 cut(s)	114, 115, 183
MaeI	CTAG	1 cut(s)	30
MalI	GATC	2 cut(s)	91, 209
MboI	GATC	2 cut(s)	89, 207
MboII	GAAGA	3 cut(s)	33, 64, 209
MflI	RGATCY	1 cut(s)	89
MnlI	CCTC	7 cut(s)	25, 26, 37, 122, 132, 175, 229
MseI	TTAA	1 cut(s)	59
MvnI	CGCG	1 cut(s)	272
NdeII	GATC	2 cut(s)	89, 207
NlaIII	CATG	3 cut(s)	10, 80, 214
PagI	TCATGA	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	2 cut(s)	163, 269
RsaNI	GTAC	2 cut(s)	162, 268
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	89, 207
Sau96I	GGNCC	1 cut(s)	109
SetI	ASST	6 cut(s)	17, 159, 167, 219, 243, 278
SspMI	CTAG	1 cut(s)	30
TaqI	TCGA	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TspDTI	ATGAA	5 cut(s)	17, 23, 210, 227, 321
XbaI	TCTAGA	1 cut(s)	29
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.