Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000024.1

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Forward (+)

68585 .. 70036

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000024.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgattcgcgttccaaagaggacgtccgcattttcgctaaagtgcggacgacggcgctgcagcccaactcaggccacgacggcgcgacgcggcttgcaggagggaggccaggggtcgtgcggaggggtctgcgttgtgaagagtttaaagtatgacaagtcgcatgagtgggcgagagttgatgggatgttggctacaatagggttaagtgatcctgctcagaagcacttgggtggtattattatccatgttgaactgcctgatgtcggtgaagatgtagcacaaggcaccagatgtggtactgttgagtctgtcaaagccagcaagggcctccactctcctctctctggcaatgtagttgaagtaaatcaaaagcttcgtacctctcctgctttggtgaatagaagcccgtatgatgatggatggatcatgaaggtagaaatgagcaacaaagaggagctgaataatctgatggactatgatgagtacgcgagctatgtgaaaaccaagttgccaaacattgatgaaccagttgaaaacacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

181

Amino Acids

19.77

Weight (kDa)

8.25

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	287
AccII	CGCG	4 cut(s)	9, 85, 90, 491
AciI	CCGC	4 cut(s)	27, 45, 90, 120
AclWI	GGATC	2 cut(s)	206, 434
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	3 cut(s)	301, 382, 488
AfiI	CCNNNNNNNGG	3 cut(s)	70, 266, 347
AgsI	TTSAA	3 cut(s)	254, 362, 536
AjnI	CCWGG	1 cut(s)	108
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	376, 460, 495
AluI	AGCT	3 cut(s)	376, 460, 495
AlwI	GGATC	2 cut(s)	206, 434
AoxI	GGCC	3 cut(s)	72, 106, 328
ApeKI	GCWGC	2 cut(s)	57, 60
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspLEI	GCGC	2 cut(s)	57, 85
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	281, 409
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	44, 72
BccI	CCATC	4 cut(s)	176, 413, 417, 466
BceAI	ACGGC	2 cut(s)	68, 96
BcgI	CGANNNNNNTGC	2 cut(s)	39, 73
BciT130I	CCWGG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	58
BfoI	RGCGCY	1 cut(s)	58
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	3 cut(s)	58, 61, 91
BlsI	GCNGC	3 cut(s)	59, 62, 92
Bme1390I	CCNGG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 266, 347
Bse1I	ACTGG	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	192, 428
BseLI	CCNNNNNNNGG	3 cut(s)	70, 266, 347
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	83, 233
BseNI	ACTGG	1 cut(s)	530
BseRI	GAGGAG	2 cut(s)	330, 470
BseXI	GCAGC	2 cut(s)	44, 72
Bsh1236I	CGCG	4 cut(s)	9, 85, 90, 491
BshFI	GGCC	3 cut(s)	74, 108, 330
BshNI	GGYRCC	1 cut(s)	287
BslI	CCNNNNNNNGG	3 cut(s)	70, 266, 347
BsnI	GGCC	3 cut(s)	74, 108, 330
Bsp143I	GATC	2 cut(s)	211, 426
BspACI	CCGC	4 cut(s)	27, 45, 90, 120
BspANI	GGCC	3 cut(s)	74, 108, 330
BspCNI	CTCAG	2 cut(s)	82, 232
BspFNI	CGCG	4 cut(s)	9, 85, 90, 491
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	289
BspMAI	CTGCAG	1 cut(s)	62
BspPI	GGATC	2 cut(s)	206, 434
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	211, 426
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	95, 322, 493
BstDEI	CTNAG	3 cut(s)	69, 219, 543
BstF5I	GGATG	2 cut(s)	192, 428
BstFNI	CGCG	4 cut(s)	9, 85, 90, 491
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	57, 85
BstKTI	GATC	2 cut(s)	214, 429
BstMBI	GATC	2 cut(s)	211, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	4 cut(s)	9, 85, 90, 491
BstV1I	GCAGC	2 cut(s)	44, 72
BsuRI	GGCC	3 cut(s)	74, 108, 330
BtsCI	GGATG	2 cut(s)	192, 428
Cac8I	GCNNGC	3 cut(s)	95, 322, 493
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	2 cut(s)	57, 85
Cfr13I	GGNCC	1 cut(s)	328
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	3 cut(s)	300, 381, 487
CviAII	CATG	3 cut(s)	164, 248, 430
CviQI	GTAC	3 cut(s)	300, 381, 487
DdeI	CTNAG	3 cut(s)	69, 219, 543
DpnI	GATC	2 cut(s)	213, 428
DpnII	GATC	2 cut(s)	211, 426
DraI	TTTAAA	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	167, 251, 433
FaiI	YATR	7 cut(s)	153, 165, 249, 414, 431, 480, 498
FatI	CATG	3 cut(s)	163, 247, 429
Fnu4HI	GCNGC	3 cut(s)	58, 61, 91
FokI	GGATG	2 cut(s)	199, 435
Fsp4HI	GCNGC	3 cut(s)	58, 61, 91
GlaI	GCGC	2 cut(s)	56, 84
GluI	GCNGC	3 cut(s)	58, 61, 91
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	3 cut(s)	74, 108, 330
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	2 cut(s)	57, 85
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	167, 251, 433
Hin6I	GCGC	2 cut(s)	55, 83
HinP1I	GCGC	2 cut(s)	55, 83
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	4, 308
HphI	GGTGA	2 cut(s)	281, 409
Hpy188I	TCNGA	2 cut(s)	222, 471
Hpy188III	TCNNGA	1 cut(s)	430
Hpy99I	CGWCG	3 cut(s)	54, 82, 90
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	60, 97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	3 cut(s)	69, 219, 543
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	167, 251, 433
HspAI	GCGC	2 cut(s)	55, 83
Kzo9I	GATC	2 cut(s)	211, 426
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	2 cut(s)	44, 72
MaeII	ACGT	1 cut(s)	23
MalI	GATC	2 cut(s)	213, 428
MboI	GATC	2 cut(s)	211, 426
MboII	GAAGA	2 cut(s)	151, 284
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	8 cut(s)	12, 94, 98, 116, 341, 351, 394, 448
MseI	TTAA	2 cut(s)	146, 206
MslI	CAYNNNNRTG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	4 cut(s)	9, 85, 90, 491
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	2 cut(s)	211, 426
NlaIII	CATG	3 cut(s)	167, 251, 433
NlaIV	GGNNCC	1 cut(s)	289
OliI	CACNNNNGTG	1 cut(s)	231
PagI	TCATGA	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	59, 62, 92
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	62
RsaI	GTAC	3 cut(s)	301, 382, 488
RsaNI	GTAC	3 cut(s)	300, 381, 487
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	146, 206
SatI	GCNGC	3 cut(s)	58, 61, 91
Sau3AI	GATC	2 cut(s)	211, 426
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	6 cut(s)	26, 378, 386, 438, 462, 497
SfcI	CTRYAG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	231
SsiI	CCGC	4 cut(s)	27, 45, 90, 120
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	26
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	146, 206
Tru9I	TTAA	2 cut(s)	146, 206
TseI	GCWGC	2 cut(s)	57, 60
TspDTI	ATGAA	2 cut(s)	446, 540
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.