Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Reverse (-)

56520589 .. 56522376

Gene Structure 1788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0440900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCTTGTAGTTGGATTTCATCGCTACATTCTTGAAAATTTCACCGGTGACACTTTGGAGGGTGTGACTGTACGGGAAGTGGAGCAGCAGTTTGATCCGAAATTTGATGAGGCTCGAGCAGTAGTAGAAGGCCAGATCATGTCTTTGCGAGGTCATGCAGAAAGATATGGAGTGCCTTCTCCTCCAAAACGATTGATAGCAACTGGTAGTTCATCAGTGAATCGTGCCTTCCTGTACATTGCAGCGTGTGTATTTGGATGCGAGTTGTACACAGTTCGTAGATCTGATTCAGTTTCTCTTGGAGCTGCATTGAGGGCTGTTCATGGTTGGCTATGCAGCGCAGAAGGTACTTTTGTGGGAAAGATCCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

124

Amino Acids

13.61

Weight (kDa)

6.82

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGGY_C	PF02782	5 - 110	1.8e-12	FGGY family of carbohydrate kinases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	89, 358
AcsI	RAATTY	2 cut(s)	37, 101
AfaI	GTAC	4 cut(s)	72, 236, 269, 349
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
AlwI	GGATC	2 cut(s)	89, 358
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	4 cut(s)	85, 242, 305, 336
ApoI	RAATTY	2 cut(s)	37, 101
AsiGI	ACCGGT	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	34, 59
AvaI	CYCGRG	1 cut(s)	114
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
BbvI	GCAGC	4 cut(s)	97, 254, 292, 348
BglII	AGATCT	1 cut(s)	281
BisI	GCNGC	4 cut(s)	86, 243, 306, 337
BlsI	GCNGC	4 cut(s)	87, 244, 307, 338
BmeT110I	CYCGRG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	4 cut(s)	97, 254, 292, 348
BshFI	GGCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	45
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	114
Bsp1407I	TGTACA	2 cut(s)	234, 267
Bsp143I	GATC	4 cut(s)	94, 135, 281, 363
BspANI	GGCC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	89, 358
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	2 cut(s)	234, 267
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	4 cut(s)	94, 135, 281, 363
Bst4CI	ACNGT	2 cut(s)	70, 274
BstAUI	TGTACA	2 cut(s)	234, 267
BstF5I	GGATG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	4 cut(s)	97, 138, 284, 366
BstMBI	GATC	4 cut(s)	94, 135, 281, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstV1I	GCAGC	4 cut(s)	97, 254, 292, 348
BstX2I	RGATCY	2 cut(s)	281, 363
BstYI	RGATCY	2 cut(s)	281, 363
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	222
CfoI	GCGC	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	44
Csp6I	GTAC	4 cut(s)	71, 235, 268, 348
CspAI	ACCGGT	1 cut(s)	44
CviAII	CATG	3 cut(s)	139, 155, 323
CviJI	RGCY	5 cut(s)	113, 132, 305, 317, 331
CviKI_1	RGCY	5 cut(s)	113, 132, 305, 317, 331
CviQI	GTAC	4 cut(s)	71, 235, 268, 348
DpnI	GATC	4 cut(s)	96, 137, 283, 365
DpnII	GATC	4 cut(s)	94, 135, 281, 363
Eco88I	CYCGRG	1 cut(s)	114
FaeI	CATG	3 cut(s)	142, 158, 326
FaiI	YATR	5 cut(s)	140, 156, 168, 324, 334
FatI	CATG	3 cut(s)	138, 154, 322
Fnu4HI	GCNGC	4 cut(s)	86, 243, 306, 337
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	4 cut(s)	86, 243, 306, 337
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	4 cut(s)	86, 243, 306, 337
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	142, 158, 326
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	220, 287
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	2 cut(s)	34, 59
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	99, 286
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	4 cut(s)	122, 186, 238, 338
HpyCH4III	ACNGT	2 cut(s)	70, 274
HpyCH4V	TGCA	4 cut(s)	158, 242, 308, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
Hsp92II	CATG	3 cut(s)	142, 158, 326
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	94, 135, 281, 363
LmnI	GCTCC	2 cut(s)	82, 302
LpnPI	CCDG	4 cut(s)	58, 146, 189, 245
Lsp1109I	GCAGC	4 cut(s)	97, 254, 292, 348
LweI	GCATC	1 cut(s)	248
MaeIII	GTNAC	2 cut(s)	47, 64
MalI	GATC	4 cut(s)	96, 137, 283, 365
MboI	GATC	4 cut(s)	94, 135, 281, 363
MflI	RGATCY	2 cut(s)	281, 363
MluCI	AATT	2 cut(s)	37, 101
MnlI	CCTC	5 cut(s)	52, 103, 143, 192, 306
MspI	CCGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	4 cut(s)	94, 135, 281, 363
NlaIII	CATG	3 cut(s)	142, 158, 326
NmuCI	GTSAC	2 cut(s)	47, 64
PaeR7I	CTCGAG	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	220, 287
PinAI	ACCGGT	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	87, 244, 307, 338
PspXI	VCTCGAGB	1 cut(s)	114
PsuI	RGATCY	2 cut(s)	281, 363
RsaI	GTAC	4 cut(s)	72, 236, 269, 349
RsaNI	GTAC	4 cut(s)	71, 235, 268, 348
SatI	GCNGC	4 cut(s)	86, 243, 306, 337
Sau3AI	GATC	4 cut(s)	94, 135, 281, 363
SetI	ASST	3 cut(s)	154, 307, 349
SfaNI	GCATC	1 cut(s)	248
Sfr274I	CTCGAG	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	37, 101
TaaI	ACNGT	2 cut(s)	70, 274
TaqI	TCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	37, 101
TatI	WGTACW	2 cut(s)	234, 267
TfiI	GAWTC	2 cut(s)	220, 287
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	2 cut(s)	47, 64
TseI	GCWGC	4 cut(s)	85, 242, 305, 336
Tsp45I	GTSAC	2 cut(s)	47, 64
TspDTI	ATGAA	3 cut(s)	8, 201, 311
TspRI	CASTG	1 cut(s)	222
XapI	RAATTY	2 cut(s)	37, 101
XhoI	CTCGAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.