Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005002

Physical Location & Seq

Genomic Coordinates Reverse (-)

38301037 .. 38304534

Gene Structure 3498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1251000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTTCAAGGTTGGTGTGGGCGTCAAGGGCGGCTTCCTACCTCAGAATCCAAACCACCCTCAGAGGATTTGCTTCTGTTGTGAAAGATCTCAAGTACGCCGATTCTCATGAGTGGGTGAAAGTTGATGGAAACTCCGCAACTATTGGAATAACTGATCATGCGCAAGATCACTTAGGTGATGTTGTGTATGTTGAGTTGCCGGAAGCGGGGGCTGCTGTGAAGCAGGGCGAAGGCTTTGGAGCAGTTGAAAGTGTCAAGGCAACCAGTGATGTTTACTCTCCTGTGTCGGGAAAAGTGACTGAAGTCAATGAAGAGCTTAGCAACTCCCCTGGTTTGGTCAACTCAAGCCCGTATGGGGATGGGTGGATAATGAAAGTCGAGATAAGCGATAGTGGTGAACTGAATAAATTGTTGGACGCAGAAAAGTACACCAAGTTTTGTGAAGAAGAAGATGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_H

Protein Analysis

155

Amino Acids

16.64

Weight (kDa)

4.69

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCV_H	PF01597	31 - 150	1.2e-49	Glycine cleavage H-protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35120
fragaria_vesca	FvH4_3g12351 FvH4_6g39570
malus_domestica	MD05G1251000.v1.1 MD09G1138700.v1.1 MD10G1231600.v1.1
prunus_persica	Prupe.3G186700_v2.0.a1 Prupe.4G112700_v2.0.a1
pyrus_communis	pycom05g22890 pycom10g19490
rosa_chinensis	RchiOBHm_Chr2g0153611 RchiOBHm_Chr5g0020141
rosa_laevigata	RLG00000020714 RLG00000032504
rosa_multiflora	Rmu_sc0000116.1_g000004 Rmu_ssc0000024.1_g000014
rosa_roxburghii	Rroxscaffold_1G00058060 Rroxscaffold_2G00094870
rosa_rugosa	Rorug02G0440900 Rorug05G0057400
rosa_samantha	Rh2AG503800 Rh2BG514500 Rh2CG489500 Rh2DG526300 Rh5AG147500 Rh5BG147100 Rh5CG158500 Rh5DG146400
rosa_wichuraiana	Rw2G041380 Rw5G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	165
AciI	CCGC	3 cut(s)	32, 138, 209
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	2 cut(s)	98, 431
AfiI	CCNNNNNNNGG	4 cut(s)	209, 290, 337, 358
AgsI	TTSAA	2 cut(s)	9, 251
AjnI	CCWGG	1 cut(s)	331
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	130, 191, 410
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	122, 356
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	157
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	2 cut(s)	33, 216
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	2 cut(s)	34, 217
Bme1390I	CCNGG	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	445
BoxI	GACNNNNGTC	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	77, 331
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 290, 337, 358
Bse1I	ACTGG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	4 cut(s)	209, 290, 337, 358
BseMII	CTCAG	2 cut(s)	58, 76
BseNI	ACTGG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	4 cut(s)	209, 290, 337, 358
Bsp143I	GATC	3 cut(s)	88, 157, 169
Bsp1720I	GCTNAGC	1 cut(s)	320
BspACI	CCGC	3 cut(s)	32, 138, 209
BspCNI	CTCAG	2 cut(s)	57, 75
BspHI	TCATGA	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	88, 157, 169
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	1 cut(s)	23
BstDEI	CTNAG	4 cut(s)	44, 62, 175, 320
BstF5I	GGATG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	91, 160, 172
BstMBI	GATC	3 cut(s)	88, 157, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 215
BstNI	CCWGG	1 cut(s)	333
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	274
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	166
CseI	GACGC	2 cut(s)	12, 428
Csp6I	GTAC	2 cut(s)	97, 430
CviAII	CATG	2 cut(s)	110, 161
CviJI	RGCY	6 cut(s)	5, 35, 215, 237, 319, 351
CviKI_1	RGCY	6 cut(s)	5, 35, 215, 237, 319, 351
CviQI	GTAC	2 cut(s)	97, 430
DdeI	CTNAG	4 cut(s)	44, 62, 175, 320
DpnI	GATC	3 cut(s)	90, 159, 171
DpnII	GATC	3 cut(s)	88, 157, 169
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	113, 164
FaiI	YATR	4 cut(s)	111, 162, 192, 357
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FatI	CATG	2 cut(s)	109, 160
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	33, 216
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	2 cut(s)	33, 216
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	2 cut(s)	33, 216
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	2 cut(s)	12, 428
HhaI	GCGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	113, 164
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	48, 104
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	3 cut(s)	130, 191, 410
Hpy166II	GTNNAC	4 cut(s)	277, 343, 401, 432
Hpy188I	TCNGA	2 cut(s)	47, 65
Hpy188III	TCNNGA	3 cut(s)	110, 291, 382
Hpy8I	GTNNAC	4 cut(s)	277, 343, 401, 432
HpyAV	CCTTC	1 cut(s)	227
HpyCH4V	TGCA	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 215
HpyF3I	CTNAG	4 cut(s)	44, 62, 175, 320
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	113, 164
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	88, 157, 169
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	6 cut(s)	212, 216, 280, 297, 318, 345
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	3 cut(s)	90, 159, 171
MboI	GATC	3 cut(s)	88, 157, 169
MboII	GAAGA	4 cut(s)	326, 458, 461, 464
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	3 cut(s)	53, 59, 71
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	29, 215
NdeII	GATC	3 cut(s)	88, 157, 169
NlaIII	CATG	2 cut(s)	113, 164
NmuCI	GTSAC	1 cut(s)	298
NsbI	TGCGCA	1 cut(s)	165
OliI	CACNNNNGTG	1 cut(s)	177
PagI	TCATGA	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	48, 104
PkrI	GCNGC	2 cut(s)	34, 217
PshAI	GACNNNNGTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	2 cut(s)	98, 431
RsaNI	GTAC	2 cut(s)	97, 430
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	309
SatI	GCNGC	2 cut(s)	33, 216
Sau3AI	GATC	3 cut(s)	88, 157, 169
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	4 cut(s)	14, 45, 181, 321
SfaNI	GCATC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	92, 346
SmoI	CTYRAG	2 cut(s)	92, 346
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	3 cut(s)	32, 138, 209
StyD4I	CCNGG	1 cut(s)	331
TaqI	TCGA	1 cut(s)	381
TasI	AATT	1 cut(s)	410
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	48, 104
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	327, 389
TspRI	CASTG	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.