FvH4_3g20810

Phytohormone-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004227
Physical Location & Seq
Forward (+)
13872837 .. 13874229
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20810.t2

Sequence Viewer

Length: 465 bp
ATGGCCAGAGAGACAAAGGCTCAAAGAACAGTTGGGGTTGGAGTTGAAGCCCTGTGGAAAGGCATGACCAAGGATTTAGTTTCTGTTATGCCAAAGATTATGCCTGATATAGTGCAAAGTGTCGAAGTGGTTGAAGGAGATGGTGGCCTTGGTTCTGTTCTGCTCTTCAAACTTGGCCGCGATCCACTATCGAAAAGACAGCAGACGGAGAAGATTGTGGAACTAGATGAGTCTCAGTATCGATTTGCACTGCAGGTGTTAGAAGGCCCAGCACTAACACTGCGTGATTTTTCTTCATTGACAACAACTTTTCAGCTGAGTGCTATCAGTGAGAAGGAGACCCTGGTTGATATGAAGGTGGAATATGCAACTGAAAAAGAAGCAGCAGCTAATATGGGAGAGATAGCAATGCAGCCAGTTCTTTCTTTCGTTCAACTCCTGGAGAAACTCGTACTAGAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

155

Amino Acids

16.99

Weight (kDa)

4.8

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 27 - 152 5.5e-10 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 244
AccII CGCG 1 cut(s) 180
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 2 cut(s) 3, 175
AdeI CACNNNGTG 1 cut(s) 284
AfaI GTAC 1 cut(s) 453
AgsI TTSAA 4 cut(s) 47, 134, 169, 434
AjnI CCWGG 2 cut(s) 342, 438
AluBI AGCT 2 cut(s) 316, 389
AluI AGCT 2 cut(s) 316, 389
Alw26I GTCTC 3 cut(s) 5, 237, 332
AlwI GGATC 1 cut(s) 176
AoxI GGCC 4 cut(s) 3, 145, 175, 265
ApeKI GCWGC 3 cut(s) 383, 386, 412
AspS9I GGNCC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 3 cut(s) 395, 398, 424
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 2 cut(s) 344, 440
BcoDI GTCTC 3 cut(s) 5, 237, 332
BfaI CTAG 2 cut(s) 224, 455
BfmI CTRYAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 4 cut(s) 178, 384, 387, 413
BlsI GCNGC 4 cut(s) 179, 385, 388, 414
Bme1390I CCNGG 2 cut(s) 344, 440
BmgT120I GGNCC 1 cut(s) 266
BmrFI CCNGG 2 cut(s) 344, 440
BpmI CTGGAG 1 cut(s) 461
Bsa29I ATCGAT 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 69, 148, 342
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 2 cut(s) 344, 440
BseCI ATCGAT 1 cut(s) 241
BseDI CCNNGG 3 cut(s) 69, 148, 342
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 2 cut(s) 248, 308
BseNI ACTGG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 395, 398, 424
BseYI CCCAGC 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 4 cut(s) 5, 147, 177, 267
BshVI ATCGAT 1 cut(s) 241
BsmAI GTCTC 3 cut(s) 5, 237, 332
BsnI GGCC 4 cut(s) 5, 147, 177, 267
Bso31I GGTCTC 1 cut(s) 332
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 178
BspANI GGCC 4 cut(s) 5, 147, 177, 267
BspCNI CTCAG 2 cut(s) 247, 309
BspDI ATCGAT 1 cut(s) 241
BspFNI CGCG 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 1 cut(s) 176
BspQI GCTCTTC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 414
BsrI ACTGG 1 cut(s) 416
BssECI CCNNGG 3 cut(s) 69, 148, 342
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 2 cut(s) 69, 148
Bst2UI CCWGG 2 cut(s) 344, 440
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 170
BstDEI CTNAG 2 cut(s) 234, 317
BstFNI CGCG 1 cut(s) 180
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 3 cut(s) 5, 237, 332
BstMBI GATC 1 cut(s) 181
BstNI CCWGG 2 cut(s) 344, 440
BstSCI CCNGG 2 cut(s) 342, 438
BstSFI CTRYAG 1 cut(s) 251
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 395, 398, 424
Bsu15I ATCGAT 1 cut(s) 241
BsuRI GGCC 4 cut(s) 5, 147, 177, 267
BsuTUI ATCGAT 1 cut(s) 241
BtsI GCAGTG 2 cut(s) 248, 278
BtsIMutI CAGTG 3 cut(s) 248, 278, 334
BveI ACCTGC 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 266
ClaI ATCGAT 1 cut(s) 241
Csp6I GTAC 1 cut(s) 452
CviAII CATG 1 cut(s) 64
CviJI RGCY 9 cut(s) 5, 20, 50, 147, 177, 267, 316, 389, 415
CviKI_1 RGCY 9 cut(s) 5, 20, 50, 147, 177, 267, 316, 389, 415
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 2 cut(s) 234, 317
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
DraIII CACNNNGTG 1 cut(s) 284
EaeI YGGCCR 2 cut(s) 3, 175
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco130I CCWWGG 2 cut(s) 69, 148
Eco31I GGTCTC 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 342, 438
EcoT14I CCWWGG 2 cut(s) 69, 148
ErhI CCWWGG 2 cut(s) 69, 148
FaeI CATG 1 cut(s) 67
FaiI YATR 7 cut(s) 65, 89, 101, 110, 353, 366, 395
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 178, 384, 387, 413
Fsp4HI GCNGC 4 cut(s) 178, 384, 387, 413
FspBI CTAG 2 cut(s) 224, 455
GluI GCNGC 4 cut(s) 178, 384, 387, 413
GsaI CCCAGC 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 4 cut(s) 5, 147, 177, 267
Hin1II CATG 1 cut(s) 67
HinfI GANTC 2 cut(s) 230, 458
HpyAV CCTTC 4 cut(s) 128, 257, 328, 349
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 5 cut(s) 115, 248, 253, 368, 412
HpyF3I CTNAG 2 cut(s) 234, 317
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 1 cut(s) 181
LguI GCTCTTC 1 cut(s) 170
Lsp1109I GCAGC 3 cut(s) 395, 398, 424
MaeI CTAG 2 cut(s) 224, 455
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 3 cut(s) 157, 223, 285
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 19
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 316
MspR9I CCNGG 2 cut(s) 344, 440
MvaI CCWGG 2 cut(s) 344, 440
MvnI CGCG 1 cut(s) 180
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 67
PaqCI CACCTGC 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 458
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 4 cut(s) 179, 385, 388, 414
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 342, 438
PspFI CCCAGC 1 cut(s) 268
PspGI CCWGG 2 cut(s) 342, 438
PspPI GGNCC 1 cut(s) 266
PstI CTGCAG 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 316
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
SapI GCTCTTC 1 cut(s) 170
SatI GCNGC 4 cut(s) 178, 384, 387, 413
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 344, 440
SetI ASST 4 cut(s) 258, 318, 360, 391
SfcI CTRYAG 1 cut(s) 251
SsiI CCGC 1 cut(s) 178
SspMI CTAG 2 cut(s) 224, 455
StyD4I CCNGG 2 cut(s) 342, 438
StyI CCWWGG 2 cut(s) 69, 148
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 3 cut(s) 123, 191, 241
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 458
TscAI CASTG 3 cut(s) 255, 285, 334
TseI GCWGC 3 cut(s) 383, 386, 412
TspDTI ATGAA 2 cut(s) 285, 368
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 3 cut(s) 255, 285, 334
XspI CTAG 2 cut(s) 224, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.