Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000879.1

Orthogroup ID

OG0004227

Physical Location & Seq

Genomic Coordinates Reverse (-)

29215 .. 29502

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000879.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgttagatgcatcaaagataatttaccagaaggacaagattgtggagcttgatgagtctgtgcataaaattgggctgcaaataataggaggccacttgaaccatgggttttcttcatacaaaacaagtttccaacttactgcaattcaagagcaggagatcctggttagtttcacagtgacctatgagtctgaagttaaagatactaccatgccatcaaggtcaacccaagccgctgtagctttcatcaggagcctagagtcctatttgttaagtgctgctgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

95

Amino Acids

10.54

Weight (kDa)

5.48

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004227)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20810 FvH4_3g20810 FvH4_3g20820
malus_domestica	MD03G1220400.v1.1 MD03G1220500.v1.1 MD11G1238400.v1.1
prunus_persica	Prupe.4G188200_v2.0.a1 Prupe.4G188300_v2.0.a1 Prupe.4G188400_v2.0.a1
pyrus_communis	pycom11g21000
rosa_chinensis	RchiOBHm_Chr5g0035101 RchiOBHm_Chr5g0035111
rosa_laevigata	RLG00000033596 RLG00000033597 RLG00000033598
rosa_multiflora	Rmu_co8030986.1_g000001 Rmu_sc0000879.1_g000009 Rmu_sc0000879.1_g000011 Rmu_sc0005362.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045280 Rroxscaffold_1G00045300
rosa_rugosa	Rorug05G0149900 Rorug05G0150000 Rorug05G0150100
rosa_samantha	Rh5AG242900 Rh5BG242400 Rh5BG242500 Rh5CG273900 Rh5CG274000 Rh5CG274100 Rh5DG251000 Rh5DG251100
rosa_wichuraiana	Rw5G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	187
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	100, 149
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	49, 242
AluI	AGCT	2 cut(s)	49, 242
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	76, 278, 281
BbvI	GCAGC	3 cut(s)	63, 265, 268
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	164
BfaI	CTAG	2 cut(s)	257, 286
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	4 cut(s)	77, 234, 279, 282
BlsI	GCNGC	4 cut(s)	78, 235, 280, 283
Bme1390I	CCNGG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	103
BseXI	GCAGC	3 cut(s)	63, 265, 268
BshFI	GGCC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	159
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	63, 265, 268
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	183
CviAII	CATG	2 cut(s)	104, 211
CviJI	RGCY	6 cut(s)	49, 76, 93, 233, 242, 255
CviKI_1	RGCY	6 cut(s)	49, 76, 93, 233, 242, 255
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DrdI	GACNNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	107, 214
FaiI	YATR	5 cut(s)	66, 105, 118, 186, 212
FatI	CATG	2 cut(s)	103, 210
Fnu4HI	GCNGC	4 cut(s)	77, 234, 279, 282
Fsp4HI	GCNGC	4 cut(s)	77, 234, 279, 282
FspBI	CTAG	2 cut(s)	257, 286
GluI	GCNGC	4 cut(s)	77, 234, 279, 282
HaeIII	GGCC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	107, 214
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	3 cut(s)	56, 188, 260
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	149, 250
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	11, 64, 79, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	107, 214
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	46, 252
LpnPI	CCDG	5 cut(s)	41, 140, 149, 176, 235
Lsp1109I	GCAGC	3 cut(s)	63, 265, 268
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	2 cut(s)	257, 286
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	1 cut(s)	105
MflI	RGATCY	1 cut(s)	159
MluCI	AATT	3 cut(s)	21, 69, 144
MlyI	GAGTC	3 cut(s)	65, 197, 269
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	1 cut(s)	83
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	2 cut(s)	198, 272
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	107, 214
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	13
PkrI	GCNGC	4 cut(s)	78, 235, 280, 283
PleI	GAGTC	3 cut(s)	64, 196, 268
PpsI	GAGTC	3 cut(s)	64, 196, 268
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	198, 272
SatI	GCNGC	4 cut(s)	77, 234, 279, 282
Sau3AI	GATC	1 cut(s)	159
SchI	GAGTC	3 cut(s)	65, 197, 269
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	4 cut(s)	51, 185, 224, 244
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	1 cut(s)	237
Sse9I	AATT	3 cut(s)	21, 69, 144
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	257, 286
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	178
TasI	AATT	3 cut(s)	21, 69, 144
TauI	GCSGC	1 cut(s)	236
Tru1I	TTAA	2 cut(s)	198, 272
Tru9I	TTAA	2 cut(s)	198, 272
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	76, 278, 281
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	105, 235
TspRI	CASTG	1 cut(s)	183
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XspI	CTAG	2 cut(s)	257, 286
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.