Prupe.4G188300_v2.0.a1

Phytohormone-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0004227
Physical Location & Seq
Forward (+)
11218458 .. 11219376
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G188300.1

Sequence Viewer

Length: 465 bp
ATGGTTAAGGAAATTAAAACTGAAGCAAAAGTAAGTGTTGGGATTGAAGCCTTGTGGAAAGCTTTGGCAAAAGATGTGGCATTTGTGACAGAAAAAGTCATCCCAAATTTGGTCAAGAATGCCGAAGTGATAGAAGGAGATGGTGGCATTGGCACAGTCTTCCTCTTCAATTTTGGTTCCGATGTACCAAAGATGAGTTATCAGAAGGAAAAGATTGTGGAGCTTGATGAGGCTGTGCATAAAATTGGGCTGCAAGTCATTGAAGGAGGACACTTGAACTTTGGGTTTTCTTCATACAAAACAACCTTCCAACTCACTCGAATTCAGGAAGAGGAGACCATGGTCAGTGTTGAGGTCACATATGAGTCTCAAGTGGAAGATAGTAGCATGCCATCAAAGACAGCAAAGTCTGTTTTAGCATTCATAAGGAGCTTAGAATGTTATTTGTTGAATGGTGCTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

155

Amino Acids

17.0

Weight (kDa)

5.01

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 406
AcsI RAATTY 2 cut(s) 106, 321
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 5 cut(s) 47, 169, 263, 277, 451
AluBI AGCT 3 cut(s) 62, 223, 432
AluI AGCT 3 cut(s) 62, 223, 432
Alw26I GTCTC 2 cut(s) 329, 372
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 2 cut(s) 106, 321
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 237
BccI CCATC 2 cut(s) 134, 400
BcoDI GTCTC 2 cut(s) 329, 372
BfaI CTAG 1 cut(s) 463
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 178
BoxI GACNNNNGTC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 329, 372
BsmI GAATGC 2 cut(s) 124, 419
Bso31I GGTCTC 1 cut(s) 329
Bsp19I CCATGG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 2 cut(s) 170, 324
BstC8I GCNNGC 1 cut(s) 389
BstDEI CTNAG 1 cut(s) 433
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 99
BstMAI GTCTC 2 cut(s) 329, 372
BstNSI RCATGY 1 cut(s) 391
BstPAI GACNNNNGTC 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 352
Cac8I GCNNGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 185
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 2 cut(s) 340, 388
CviJI RGCY 6 cut(s) 50, 62, 223, 233, 250, 432
CviKI_1 RGCY 6 cut(s) 50, 62, 223, 233, 250, 432
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 433
DrdI GACNNNNNNGTC 1 cut(s) 406
DseDI GACNNNNNNGTC 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 170, 324
EarI CTCTTC 2 cut(s) 170, 324
Eco130I CCWWGG 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 2 cut(s) 343, 391
FaiI YATR 7 cut(s) 240, 295, 341, 361, 363, 389, 425
FatI CATG 2 cut(s) 339, 387
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 1 cut(s) 463
GluI GCNGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 343, 391
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 1 cut(s) 365
Hpy188I TCNGA 2 cut(s) 181, 204
Hpy188III TCNNGA 2 cut(s) 115, 326
HpyAV CCTTC 4 cut(s) 128, 199, 257, 316
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 2 cut(s) 238, 253
HpyF3I CTNAG 1 cut(s) 433
Hsp92II CATG 2 cut(s) 343, 391
LmnI GCTCC 2 cut(s) 220, 429
LpnPI CCDG 1 cut(s) 311
Lsp1109I GCAGC 1 cut(s) 237
MaeI CTAG 1 cut(s) 463
MaeIII GTNAC 2 cut(s) 85, 355
MboII GAAGA 5 cut(s) 151, 157, 282, 341, 389
MluCI AATT 5 cut(s) 12, 106, 169, 243, 321
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 5 cut(s) 173, 223, 260, 325, 346
MseI TTAA 2 cut(s) 6, 15
Mva1269I GAATGC 2 cut(s) 124, 419
NcoI CCATGG 1 cut(s) 339
NdeI CATATG 1 cut(s) 361
NlaIII CATG 2 cut(s) 343, 391
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 2 cut(s) 85, 355
NspI RCATGY 1 cut(s) 391
PaeI GCATGC 1 cut(s) 391
PctI GAATGC 2 cut(s) 124, 419
PkrI GCNGC 1 cut(s) 252
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PshAI GACNNNNGTC 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 178
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 6, 15
SatI GCNGC 1 cut(s) 251
SchI GAGTC 1 cut(s) 374
SetI ASST 5 cut(s) 64, 225, 308, 357, 434
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
SphI GCATGC 1 cut(s) 391
Sse9I AATT 5 cut(s) 12, 106, 169, 243, 321
SspMI CTAG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 319
TasI AATT 5 cut(s) 12, 106, 169, 243, 321
Tru1I TTAA 2 cut(s) 6, 15
Tru9I TTAA 2 cut(s) 6, 15
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 2 cut(s) 85, 355
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 2 cut(s) 85, 355
TspDTI ATGAA 2 cut(s) 282, 412
TspRI CASTG 1 cut(s) 352
XapI RAATTY 2 cut(s) 106, 321
XceI RCATGY 1 cut(s) 391
XspI CTAG 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.