Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004227

Physical Location & Seq

Genomic Coordinates Forward (+)

11215309 .. 11217498

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G188200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTGTCAAAGAGAAAAAGGATCAAAAAACAGTTGGTGTTGGAGTTGAAGCCCTGTGGAGAGCTATGGCTAAGGATACAGTTACTGTTATACCAAAGATAATGCCTAGTATTGTGCGCAGGATTGAAGTGATTGAGGGAGATGGTGGCCTTGGTTCTGTTTTGCTCTTCAATCTTGGCGATCATCATGTAGAGTCCAAGAGAAAACAGACAGAAAAAATTGTGGAACTTGACGACTCTGAGTATCGATTTGCACTGAAAGTATTGGAAGGTCCGGCGCTAACACTGCGCAATTTTTCTGCATTGACAACTTCTTTCCAACTTAGCAAAATCGGAGAGCAGGAGACCTTGGTTGATATGAAAGTGGTGTATGAGACTGAAAAAGAGGAAGCTAATACCGGAGATATAGCATTGCAGCCTGCGATTTCTTACATTCAGTTCCTGGAGAAATATGTATTGGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

156

Amino Acids

17.34

Weight (kDa)

5.17

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004227)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20810 FvH4_3g20810 FvH4_3g20820
malus_domestica	MD03G1220400.v1.1 MD03G1220500.v1.1 MD11G1238400.v1.1
prunus_persica	Prupe.4G188200_v2.0.a1 Prupe.4G188300_v2.0.a1 Prupe.4G188400_v2.0.a1
pyrus_communis	pycom11g21000
rosa_chinensis	RchiOBHm_Chr5g0035101 RchiOBHm_Chr5g0035111
rosa_laevigata	RLG00000033596 RLG00000033597 RLG00000033598
rosa_multiflora	Rmu_co8030986.1_g000001 Rmu_sc0000879.1_g000009 Rmu_sc0000879.1_g000011 Rmu_sc0005362.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045280 Rroxscaffold_1G00045300
rosa_rugosa	Rorug05G0149900 Rorug05G0150000 Rorug05G0150100
rosa_samantha	Rh5AG242900 Rh5BG242400 Rh5BG242500 Rh5CG273900 Rh5CG274000 Rh5CG274100 Rh5DG251000 Rh5DG251100
rosa_wichuraiana	Rw5G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	119, 290
AclWI	GGATC	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	50, 128, 172
AjnI	CCWGG	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	1 cut(s)	440
AluBI	AGCT	2 cut(s)	65, 392
AluI	AGCT	2 cut(s)	65, 392
Alw26I	GTCTC	2 cut(s)	338, 368
AlwI	GGATC	1 cut(s)	30
AlwNI	CAGNNNCTG	2 cut(s)	86, 442
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	415
AspLEI	GCGC	3 cut(s)	120, 280, 291
AspS9I	GGNCC	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	443
BciVI	GTATCC	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	338, 368
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	151, 348
BsaWI	WCCGGW	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	443
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	151, 348
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	427
BshFI	GGCC	1 cut(s)	150
BshVI	ATCGAT	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	275, 399
BsmAI	GTCTC	2 cut(s)	338, 368
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	22, 181
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	247
BspPI	GGATC	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	151, 348
BssMI	GATC	2 cut(s)	22, 181
BssT1I	CCWWGG	2 cut(s)	151, 348
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	3 cut(s)	34, 82, 88
Bst6I	CTCTTC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	3 cut(s)	72, 240, 323
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	3 cut(s)	120, 280, 291
BstKTI	GATC	2 cut(s)	25, 184
BstMAI	GTCTC	2 cut(s)	338, 368
BstMBI	GATC	2 cut(s)	22, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	427
Bsu15I	ATCGAT	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	2 cut(s)	254, 284
Cac8I	GCNNGC	1 cut(s)	420
CaiI	CAGNNNCTG	2 cut(s)	86, 442
CfoI	GCGC	3 cut(s)	120, 280, 291
Cfr13I	GGNCC	1 cut(s)	272
ClaI	ATCGAT	1 cut(s)	247
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	7 cut(s)	5, 53, 65, 71, 150, 392, 418
CviKI_1	RGCY	7 cut(s)	5, 53, 65, 71, 150, 392, 418
DdeI	CTNAG	3 cut(s)	72, 240, 323
DpnI	GATC	2 cut(s)	24, 183
DpnII	GATC	2 cut(s)	22, 181
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	151, 348
Eco31I	GGTCTC	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	151, 348
ErhI	CCWWGG	2 cut(s)	151, 348
FaeI	CATG	1 cut(s)	191
FaiI	YATR	8 cut(s)	68, 92, 189, 359, 372, 407, 453, 466
FatI	CATG	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	1 cut(s)	108
FspI	TGCGCA	2 cut(s)	119, 290
GlaI	GCGC	3 cut(s)	119, 279, 290
GluI	GCNGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	275, 399
HhaI	GCGC	3 cut(s)	120, 280, 291
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	3 cut(s)	118, 278, 289
HinP1I	GCGC	3 cut(s)	118, 278, 289
HinfI	GANTC	3 cut(s)	194, 236, 461
HpaII	CCGG	2 cut(s)	275, 399
Hpy188I	TCNGA	2 cut(s)	241, 335
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	3 cut(s)	34, 82, 88
HpyCH4V	TGCA	3 cut(s)	254, 302, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	3 cut(s)	72, 240, 323
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	3 cut(s)	118, 278, 289
Kzo9I	GATC	2 cut(s)	22, 181
LguI	GCTCTTC	1 cut(s)	173
LpnPI	CCDG	8 cut(s)	68, 106, 288, 326, 412, 428, 432, 455
Lsp1109I	GCAGC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	24, 183
MboI	GATC	2 cut(s)	22, 181
MboII	GAAGA	1 cut(s)	160
MluCI	AATT	2 cut(s)	219, 292
MlyI	GAGTC	2 cut(s)	203, 230
MmeI	TCCRAC	2 cut(s)	22, 343
MnlI	CCTC	2 cut(s)	130, 379
MspI	CCGG	2 cut(s)	275, 399
MspR9I	CCNGG	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	286
NdeII	GATC	2 cut(s)	22, 181
NlaIII	CATG	1 cut(s)	191
NsbI	TGCGCA	2 cut(s)	119, 290
PciSI	GCTCTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	2 cut(s)	202, 230
PpsI	GAGTC	2 cut(s)	202, 230
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	272
PstNI	CAGNNNCTG	2 cut(s)	86, 442
SapI	GCTCTTC	1 cut(s)	173
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	2 cut(s)	22, 181
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	203, 230
ScrFI	CCNGG	1 cut(s)	443
SetI	ASST	4 cut(s)	67, 274, 350, 394
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	219, 292
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	2 cut(s)	151, 348
TaaI	ACNGT	3 cut(s)	34, 82, 88
TaqI	TCGA	1 cut(s)	247
TasI	AATT	2 cut(s)	219, 292
TfiI	GAWTC	1 cut(s)	461
TscAI	CASTG	2 cut(s)	261, 291
TseI	GCWGC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	374
TspRI	CASTG	2 cut(s)	261, 291
VpaK11BI	GGWCC	1 cut(s)	272
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.