pycom11g21000

Phytohormone-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0004227
Physical Location & Seq
Reverse (-)
24106084 .. 24106979
896 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g21000.2

Sequence Viewer

Length: 390 bp
ATGGCCAAGGAAGTTAAAATTGAAGCAAAAGTATGTGTAGGGATTGAAGCCTTGTGGGAAGCTCTTGCAAAAGATTTGAGAATCTTGATTCCCAAAATCATCCCAAATTTGGTCAAGAGTGTGGAAGTAATAGAAGGGGATGATGTACCAAAGATGAGTTACCAAAAGGAAAAGATTGTGGAGCTTGATGAGTCTGTACACAAATTTGGGCTGCAAGTCATTGAAGGGGGACACCTGAACTTTGGGTTTTCTTCATACAAAACAACATTCCAACGTACTTCAATTCATGATAAGGAGACCCTGGTGAGCATTGAGATCCCTATGAGTCTGAAGTGGAAGACAACAACGCCATGCCATCCAAGACAACAATGTCCACTTTGGCTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

6.9

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 369
AclWI GGATC 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 106, 203
AcuI CTGAAG 1 cut(s) 350
AfaI GTAC 3 cut(s) 147, 198, 277
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 4 cut(s) 23, 47, 224, 282
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 2 cut(s) 62, 184
AluI AGCT 2 cut(s) 62, 184
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 310
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 106, 203
AsuHPI GGTGA 1 cut(s) 316
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 290
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 302
BmrFI CCNGG 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 344
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 6, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 6, 300
BseGI GGATG 3 cut(s) 99, 145, 355
BseLI CCNNNNNNNGG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 290
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 1 cut(s) 315
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 286
BspPI GGATC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 6, 300
BssMI GATC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 196
BstF5I GGATG 3 cut(s) 99, 145, 355
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 315
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 99, 145, 355
CciI TCATGA 1 cut(s) 286
Csp6I GTAC 3 cut(s) 146, 197, 276
CviAII CATG 2 cut(s) 287, 351
CviJI RGCY 6 cut(s) 5, 50, 62, 184, 211, 382
CviKI_1 RGCY 6 cut(s) 5, 50, 62, 184, 211, 382
CviQI GTAC 3 cut(s) 146, 197, 276
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
DrdI GACNNNNNNGTC 1 cut(s) 369
DseDI GACNNNNNNGTC 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 2 cut(s) 290, 354
FaiI YATR 5 cut(s) 34, 256, 288, 323, 352
FaqI GGGAC 1 cut(s) 243
FatI CATG 2 cut(s) 286, 350
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 3 cut(s) 86, 152, 342
Fsp4HI GCNGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 212
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 290, 354
HinfI GANTC 4 cut(s) 81, 88, 191, 325
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 199, 374
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 3 cut(s) 85, 115, 287
Hpy8I GTNNAC 2 cut(s) 199, 374
HpyAV CCTTC 2 cut(s) 128, 218
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 68, 214
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 2 cut(s) 290, 354
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 3 cut(s) 248, 287, 314
Lsp1109I GCAGC 1 cut(s) 198
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 2 cut(s) 243, 349
MflI RGATCY 1 cut(s) 315
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 18, 106, 203, 282
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 200, 334
MmeI TCCRAC 1 cut(s) 295
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NdeII GATC 1 cut(s) 315
NlaIII CATG 2 cut(s) 290, 354
PagI TCATGA 1 cut(s) 286
PfeI GAWTC 2 cut(s) 81, 88
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 2 cut(s) 199, 333
PpsI GAGTC 2 cut(s) 199, 333
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 3 cut(s) 147, 198, 277
RsaNI GTAC 3 cut(s) 146, 197, 276
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 315
SchI GAGTC 2 cut(s) 200, 334
ScrFI CCNGG 1 cut(s) 302
SetI ASST 4 cut(s) 64, 186, 237, 277
Sse9I AATT 4 cut(s) 18, 106, 203, 282
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 6
TaiI ACGT 1 cut(s) 277
TasI AATT 4 cut(s) 18, 106, 203, 282
TatI WGTACW 1 cut(s) 196
TfiI GAWTC 2 cut(s) 81, 88
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 243, 275
XapI RAATTY 2 cut(s) 106, 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.