Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004227

Physical Location & Seq

Genomic Coordinates Forward (+)

29641219 .. 29642484

Gene Structure 1266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG274100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGTTAAGGAAATCAAAACAGAAATCAAAGTTGGTGTTGGGATTGAAGCCTTGTGGAAGGCTTTGTCAAAAGATTTGAGATTTCTGGCTCCAAAAATTGCCCCCAATTTGATCAATAATGTGGAACTCATAGAAGGAGATGGTACCGGCATCGGTACAGTCTTGCTCTTCAGCTTTGGCACTGATGCATCAAAGATAATTTACCAGAAGGAGAAGATTGTGGAGCTTGATGAGTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

80

Amino Acids

8.73

Weight (kDa)

5.05

Isoelectric Point (pI)

24.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	1 - 78	3.3e-06	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004227)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g20810 FvH4_3g20810 FvH4_3g20820
malus_domestica	MD03G1220400.v1.1 MD03G1220500.v1.1 MD11G1238400.v1.1
prunus_persica	Prupe.4G188200_v2.0.a1 Prupe.4G188300_v2.0.a1 Prupe.4G188400_v2.0.a1
pyrus_communis	pycom11g21000
rosa_chinensis	RchiOBHm_Chr5g0035101 RchiOBHm_Chr5g0035111
rosa_laevigata	RLG00000033596 RLG00000033597 RLG00000033598
rosa_multiflora	Rmu_co8030986.1_g000001 Rmu_sc0000879.1_g000009 Rmu_sc0000879.1_g000011 Rmu_sc0005362.1_g000006
rosa_roxburghii	Rroxscaffold_1G00045280 Rroxscaffold_1G00045300
rosa_rugosa	Rorug05G0149900 Rorug05G0150000 Rorug05G0150100
rosa_samantha	Rh5AG242900 Rh5BG242400 Rh5BG242500 Rh5CG273900 Rh5CG274000 Rh5CG274100 Rh5DG251000 Rh5DG251100
rosa_wichuraiana	Rw5G022200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	154
AfaI	GTAC	2 cut(s)	145, 157
AgsI	TTSAA	1 cut(s)	47
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AluBI	AGCT	2 cut(s)	174, 226
AluI	AGCT	2 cut(s)	174, 226
Asp718I	GGTACC	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	143
BccI	CCATC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	90, 145
BmsI	GCATC	3 cut(s)	159, 175, 197
Bse118I	RCCGGY	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	90, 145
BspQI	GCTCTTC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	146
BssMI	GATC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	144, 156
CviJI	RGCY	5 cut(s)	50, 62, 89, 174, 226
CviKI_1	RGCY	5 cut(s)	50, 62, 89, 174, 226
CviQI	GTAC	2 cut(s)	144, 156
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	190
FaiI	YATR	2 cut(s)	131, 241
FbaI	TGATCA	1 cut(s)	111
HapII	CCGG	1 cut(s)	147
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	147
HpyAV	CCTTC	3 cut(s)	52, 128, 202
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	2 cut(s)	188, 239
KpnI	GGTACC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	111
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	94, 223
LpnPI	CCDG	3 cut(s)	71, 160, 218
LweI	GCATC	3 cut(s)	159, 175, 197
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	2 cut(s)	160, 226
MluCI	AATT	3 cut(s)	96, 106, 198
MlyI	GAGTC	1 cut(s)	242
Mph1103I	ATGCAT	1 cut(s)	190
MseI	TTAA	1 cut(s)	6
MspI	CCGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	111
NlaIV	GGNNCC	2 cut(s)	90, 145
NsiI	ATGCAT	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	90, 145
RsaI	GTAC	2 cut(s)	145, 157
RsaNI	GTAC	2 cut(s)	144, 156
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	242
SetI	ASST	2 cut(s)	176, 228
SfaNI	GCATC	3 cut(s)	159, 175, 197
SgeI	CNNG	6 cut(s)	64, 98, 159, 175, 217, 239
Sse9I	AATT	3 cut(s)	96, 106, 198
TaaI	ACNGT	1 cut(s)	160
TasI	AATT	3 cut(s)	96, 106, 198
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	187
TspRI	CASTG	1 cut(s)	187
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.