MD11G1238400.v1.1

Phytohormone-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004227
Physical Location & Seq
Reverse (-)
34604080 .. 34605007
928 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1238400.v1.1.491

Sequence Viewer

Length: 333 bp
ATGGTGGCATTGGAACAGTCCTTTCTCTTCAGTTTTGGCTCTGATGTACCAAAGATGAGTTACCAAAAGGAAAAGATTGTGGAGCTTGATGAGTCTGTACACAAATTTAGGCTGCAAGTCATTGAAGGGGGACACCTGAACTTTGGGTTTTCTTCATACAAAACAACATTCCAACTTACTTCAATTCATGAGAAGGAGACTCTGGTGAGCATTGAGATCACCTATGAGTCTGAAGTGGAAGACAATAATGCCATGCCATCCAAGACAACAATGTCCACTTTAGCTTTGGTCAAAAACTTAGAGGAATATTTGTTGAATAATGTTGCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

111

Amino Acids

12.52

Weight (kDa)

4.84

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 18 - 107 1.4e-08 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 271
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 2 cut(s) 13, 252
AfaI GTAC 2 cut(s) 48, 99
AgsI TTSAA 3 cut(s) 125, 183, 316
AluBI AGCT 2 cut(s) 85, 284
AluI AGCT 2 cut(s) 85, 284
Alw26I GTCTC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 211, 217
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 99
BccI CCATC 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 331
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 246
BseGI GGATG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 99
BslFI GGGAC 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 1 cut(s) 216
BspHI TCATGA 1 cut(s) 187
BsrGI TGTACA 1 cut(s) 97
BssMI GATC 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 246
BtsCI GGATG 1 cut(s) 257
CciI TCATGA 1 cut(s) 187
Csp6I GTAC 2 cut(s) 47, 98
CviAII CATG 2 cut(s) 188, 253
CviJI RGCY 4 cut(s) 39, 85, 112, 284
CviKI_1 RGCY 4 cut(s) 39, 85, 112, 284
CviQI GTAC 2 cut(s) 47, 98
DdeI CTNAG 1 cut(s) 298
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
DrdI GACNNNNNNGTC 1 cut(s) 271
DseDI GACNNNNNNGTC 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco57I CTGAAG 2 cut(s) 13, 252
FaeI CATG 2 cut(s) 191, 256
FaiI YATR 4 cut(s) 157, 189, 225, 254
FaqI GGGAC 1 cut(s) 144
FatI CATG 2 cut(s) 187, 252
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 331
GluI GCNGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 191, 256
HinfI GANTC 3 cut(s) 92, 199, 227
HphI GGTGA 2 cut(s) 211, 217
Hpy166II GTNNAC 2 cut(s) 100, 276
Hpy188I TCNGA 2 cut(s) 43, 232
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 100, 276
HpyAV CCTTC 2 cut(s) 119, 187
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 298
Hsp92II CATG 2 cut(s) 191, 256
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 149, 188
Lsp1109I GCAGC 1 cut(s) 99
MaeI CTAG 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 3 cut(s) 19, 144, 251
MluCI AATT 2 cut(s) 104, 183
MlyI GAGTC 3 cut(s) 101, 193, 236
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 1 cut(s) 295
NdeII GATC 1 cut(s) 216
NlaIII CATG 2 cut(s) 191, 256
PagI TCATGA 1 cut(s) 187
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 3 cut(s) 100, 193, 235
PpsI GAGTC 3 cut(s) 100, 193, 235
RsaI GTAC 2 cut(s) 48, 99
RsaNI GTAC 2 cut(s) 47, 98
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 216
SchI GAGTC 3 cut(s) 101, 193, 236
SetI ASST 4 cut(s) 87, 138, 224, 286
SgeI CNNG 7 cut(s) 98, 128, 148, 200, 215, 265, 274
Sse9I AATT 2 cut(s) 104, 183
SspI AATATT 1 cut(s) 308
SspMI CTAG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 18
TasI AATT 2 cut(s) 104, 183
TatI WGTACW 1 cut(s) 97
TseI GCWGC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 144, 176
XapI RAATTY 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XspI CTAG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.