RLG00000033597

Phytohormone-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004227
Physical Location & Seq
Forward (+)
29474108 .. 29474631
524 bp
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UTR
Exon/CDS
Intron
RLM00000033597

Sequence Viewer

Length: 420 bp
ATGGTTAAGGAAATTAAAACCGAAACCAAAGTTGGTGTTGGGATAGAACCCTTTTGGAATGCTTTGTCAAAAGAGTTCGGATTTGTGGTTCCAAAAGTCGTCCCCAATGTGGTCAAGAATGTGGAACTCATCGAAGGAGATGGTACCAGCATCGGTACAGTCTTGCTCTTCAATTTTGCCTCTGGGACGATCTTAGATGCATTTAAGATAAACTACCAGAAGGAAAAGATTGTGGAGCTTGATGAATCCGTGCACAGAATTGGGCTGCAAGTGATAGAAGGAGGCCACTTGAACATTGGATTTTCTTCCTACAAACCAAGTTTCCAACTTACTCCTGAAACCCTACTGGTGAGTCTCACAGTCACCTATGAGTCTGAAGTTATGCTACCATGTCATCAAAGGCAACCCAGTCTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

140

Amino Acids

15.41

Weight (kDa)

5.35

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 2 - 124 3.8e-10 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 2 cut(s) 145, 157
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 2 cut(s) 172, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 359
Alw44I GTGCAC 1 cut(s) 251
AoxI GGCC 1 cut(s) 283
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 265
Asp718I GGTACC 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 355, 361
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 369, 401
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 252
BccI CCATC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 359
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
BmiI GGNNCC 2 cut(s) 90, 145
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 2 cut(s) 159, 187
BmuI ACTGGG 1 cut(s) 402
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 2 cut(s) 351, 408
BseLI CCNNNNNNNGG 1 cut(s) 109
BseNI ACTGG 2 cut(s) 351, 408
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 255
BslFI GGGAC 2 cut(s) 86, 199
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 2 cut(s) 86, 199
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 189
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 90, 145
BspQI GCTCTTC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 2 cut(s) 351, 408
BssMI GATC 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 160, 361
Bst6I CTCTTC 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 193
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 252
BsuRI GGCC 1 cut(s) 285
Csp6I GTAC 2 cut(s) 144, 156
CviAII CATG 1 cut(s) 390
CviJI RGCY 3 cut(s) 238, 265, 285
CviKI_1 RGCY 3 cut(s) 238, 265, 285
CviQI GTAC 2 cut(s) 144, 156
DdeI CTNAG 1 cut(s) 193
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 202
FaeI CATG 1 cut(s) 393
FaiI YATR 3 cut(s) 369, 383, 391
FaqI GGGAC 2 cut(s) 86, 199
FatI CATG 1 cut(s) 389
Fnu4HI GCNGC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 266
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 1 cut(s) 285
Hin1II CATG 1 cut(s) 393
HinfI GANTC 3 cut(s) 245, 352, 371
HphI GGTGA 2 cut(s) 355, 361
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 80, 376
Hpy188III TCNNGA 2 cut(s) 115, 335
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 3 cut(s) 128, 214, 272
HpyCH4III ACNGT 2 cut(s) 160, 361
HpyCH4V TGCA 3 cut(s) 200, 253, 268
HpyF3I CTNAG 1 cut(s) 193
Hsp92II CATG 1 cut(s) 393
KpnI GGTACC 1 cut(s) 147
Kzo9I GATC 1 cut(s) 189
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 5 cut(s) 160, 168, 230, 332, 348
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 2 cut(s) 159, 187
MaeIII GTNAC 1 cut(s) 361
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 2 cut(s) 160, 297
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 3 cut(s) 12, 172, 258
MlyI GAGTC 2 cut(s) 361, 380
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 2 cut(s) 190, 275
Mph1103I ATGCAT 1 cut(s) 202
MseI TTAA 3 cut(s) 6, 15, 204
Mva1269I GAATGC 1 cut(s) 64
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 393
NlaIV GGNNCC 2 cut(s) 90, 145
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 173
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 2 cut(s) 360, 379
PpsI GAGTC 2 cut(s) 360, 379
PspN4I GGNNCC 2 cut(s) 90, 145
RsaI GTAC 2 cut(s) 145, 157
RsaNI GTAC 2 cut(s) 144, 156
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 3 cut(s) 6, 15, 204
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 1 cut(s) 189
SchI GAGTC 2 cut(s) 361, 380
SduI GDGCHC 1 cut(s) 255
SetI ASST 2 cut(s) 240, 368
SfaNI GCATC 2 cut(s) 159, 187
Sse9I AATT 3 cut(s) 12, 172, 258
TaaI ACNGT 2 cut(s) 160, 361
TaqI TCGA 1 cut(s) 132
TasI AATT 3 cut(s) 12, 172, 258
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 3 cut(s) 6, 15, 204
Tru9I TTAA 3 cut(s) 6, 15, 204
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 1 cut(s) 258
TspGWI ACGGA 1 cut(s) 238
VneI GTGCAC 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.